Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

55842979 .. 55849286

Gene Structure 6308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTGGCTTGCAAACAAATGTGACGAATGGTTCGGTGGCCTTTTACAAACTTCTGATAATTTAGATGGCCTTGAGTTCCGCGACCTTAATTACAAGAGGTGCATGGTGATCAGAGAACCAATTGATACCACGGATGGTTCTGTTGCTTTAGATAAAGCACCTGTGTCCACTCATTTTTGGAAAGCTATGCTGCTGTTTGGATTTCTTACACTTCAAGGCTCTGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGCATTGCAGTCAGCTCCTTTTCTGGGGGACCTTGGCGATATTAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGAACCTTCAGTGCACTTGCGGCAATGACCGTCATATCTGTTGGTCTTGGGCGAACTTTTCACTACATCGATGAAATCCTACCATTCAGGTTTGGCGAGACTGATTTACCCATTGATGATATTGCTGCAGTTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCGAGATGCCACCTCAAGTGATGGTTTGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCCGTTTCAGAGTTTACGGGAAATGGTGCTGGAATACTAGCTGCTGCTAGCACAGTCATTAGCACTTTCGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGCACTTGCTGCTGCCTCTTCACCCCTTGGAGTCATTGGAGGATCACTAGCTGGTCACGGTGTTGCAACGTTGCTTGCTGTACTGGGAGGTTCTATACTGGGCACATTCTTATCAGAGAAGACTATTGCCTACGTCGGGGGTGTTCTTTTTCTTGTCTTTGCTGCTGTAACAGCGGCAGAGATACCTCTTATGGCACCCGATCTTCATGATCGTCTACTTGATCATCCTCGTCTACTGGGTCTGCGGTTAATTCTCCTATGCTGCCGGCCCAGTCGTGCTCTTCAACCAGACTTCGACGACTATGTCGTCCTCTTCGCGCTCAGCCACCTCCTCTTTGGGTCACAGAAGACTTGCATTTCAATGAGGAAAGTGCTGCTGAAGGTGGGTTGGTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

385

Amino Acids

41.01

Weight (kDa)

4.74

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	105 - 162	2e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	233 - 306	3.7e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1058, 1061
AccB1I	GGYRCC	1 cut(s)	949
AccI	GTMKAC	2 cut(s)	970, 988
AccII	CGCG	2 cut(s)	81, 1073
AciI	CCGC	5 cut(s)	79, 368, 431, 929, 1000
AclI	AACGTT	1 cut(s)	824
AclWI	GGATC	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	3 cut(s)	297, 403, 1154
AfaI	GTAC	1 cut(s)	837
AfiI	CCNNNNNNNGG	2 cut(s)	278, 891
AgsI	TTSAA	5 cut(s)	215, 570, 604, 1040, 1116
AluBI	AGCT	6 cut(s)	185, 269, 383, 634, 677, 806
AluI	AGCT	6 cut(s)	185, 269, 383, 634, 677, 806
Alw21I	GWGCWC	2 cut(s)	427, 1036
Alw26I	GTCTC	2 cut(s)	503, 726
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	805
AoxI	GGCC	3 cut(s)	37, 67, 1022
ApaLI	GTGCAC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	2 cut(s)	283, 1023
AsuHPI	GGTGA	2 cut(s)	118, 768
AsuNHI	GCTAGC	2 cut(s)	634, 683
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	2 cut(s)	427, 860
BanI	GGYRCC	1 cut(s)	949
BbsI	GAAGAC	2 cut(s)	881, 1109
Bbv12I	GWGCWC	2 cut(s)	427, 1036
BccI	CCATC	3 cut(s)	59, 128, 590
BceAI	ACGGC	1 cut(s)	623
BclI	TGATCA	2 cut(s)	108, 976
BcoDI	GTCTC	2 cut(s)	503, 726
BfaI	CTAG	7 cut(s)	252, 344, 384, 635, 674, 684, 803
BfmI	CTRYAG	1 cut(s)	537
BlpI	GCTNAGC	1 cut(s)	1076
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	283, 1023
BmiI	GGNNCC	3 cut(s)	284, 415, 951
BmrI	ACTGGG	4 cut(s)	848, 863, 1001, 1020
BmsI	GCATC	1 cut(s)	571
BmtI	GCTAGC	2 cut(s)	638, 687
BmuI	ACTGGG	4 cut(s)	848, 863, 1001, 1020
BpiI	GAAGAC	2 cut(s)	881, 1109
Bpu1102I	GCTNAGC	1 cut(s)	1076
BpuEI	CTTGAG	2 cut(s)	92, 574
Bsa29I	ATCGAT	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	129, 286, 781
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 891
Bse118I	RCCGGY	2 cut(s)	226, 1020
Bse1I	ACTGG	4 cut(s)	843, 858, 996, 1026
Bse3DI	GCAATG	2 cut(s)	257, 441
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	129, 286, 781
BseGI	GGATG	2 cut(s)	139, 979
BseLI	CCNNNNNNNGG	2 cut(s)	278, 891
BseMI	GCAATG	2 cut(s)	257, 441
BseMII	CTCAG	3 cut(s)	213, 351, 1090
BseNI	ACTGG	4 cut(s)	843, 858, 996, 1026
BseRI	GAGGAG	1 cut(s)	1076
BseSI	GKGCMC	2 cut(s)	427, 860
Bsh1236I	CGCG	2 cut(s)	81, 1073
BshFI	GGCC	3 cut(s)	39, 69, 1024
BshNI	GGYRCC	1 cut(s)	949
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	427, 1036
BsiSI	CCGG	2 cut(s)	227, 1021
BslFI	GGGAC	2 cut(s)	296, 362
BslI	CCNNNNNNNGG	2 cut(s)	278, 891
BsmAI	GTCTC	2 cut(s)	503, 726
BsmFI	GGGAC	2 cut(s)	296, 362
BsnI	GGCC	3 cut(s)	39, 69, 1024
Bsp1286I	GDGCHC	3 cut(s)	427, 860, 1036
Bsp143I	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
Bsp1720I	GCTNAGC	1 cut(s)	1076
BspACI	CCGC	5 cut(s)	79, 368, 431, 929, 1000
BspANI	GGCC	3 cut(s)	39, 69, 1024
BspCNI	CTCAG	3 cut(s)	214, 350, 1089
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	2 cut(s)	81, 1073
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	3 cut(s)	284, 415, 951
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	2 cut(s)	638, 687
BspPI	GGATC	1 cut(s)	805
BspQI	GCTCTTC	2 cut(s)	243, 1041
BspT107I	GGYRCC	1 cut(s)	949
BsrDI	GCAATG	2 cut(s)	257, 441
BsrFI	RCCGGY	2 cut(s)	226, 1020
BsrI	ACTGG	4 cut(s)	843, 858, 996, 1026
BssAI	RCCGGY	2 cut(s)	226, 1020
BssECI	CCNNGG	3 cut(s)	129, 286, 781
BssMI	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
BssT1I	CCWWGG	2 cut(s)	286, 781
Bst4CI	ACNGT	3 cut(s)	442, 691, 815
Bst6I	CTCTTC	4 cut(s)	243, 778, 1041, 1073
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	6 cut(s)	9, 228, 636, 685, 831, 1022
BstDEI	CTNAG	3 cut(s)	222, 337, 1076
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	139, 979
BstFNI	CGCG	2 cut(s)	81, 1073
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	6 cut(s)	111, 247, 800, 958, 967, 979
BstMAI	GTCTC	2 cut(s)	503, 726
BstMBI	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
BstMWI	GCNNNNNNNGC	6 cut(s)	297, 377, 431, 635, 764, 926
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	427, 860
BstUI	CGCG	2 cut(s)	81, 1073
BstV2I	GAAGAC	2 cut(s)	881, 1109
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	39, 69, 1024
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	139, 979
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	6 cut(s)	9, 228, 636, 685, 831, 1022
CciI	TCATGA	1 cut(s)	961
CfoI	GCGC	1 cut(s)	1075
Cfr10I	RCCGGY	2 cut(s)	226, 1020
Cfr13I	GGNCC	2 cut(s)	283, 1023
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	836
CviAII	CATG	2 cut(s)	103, 962
CviQI	GTAC	1 cut(s)	836
DdeI	CTNAG	3 cut(s)	222, 337, 1076
DpnI	GATC	6 cut(s)	110, 246, 799, 957, 966, 978
DpnII	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
DrdI	GACNNNNNNGTC	2 cut(s)	1058, 1061
DseDI	GACNNNNNNGTC	2 cut(s)	1058, 1061
Eam1104I	CTCTTC	4 cut(s)	243, 778, 1041, 1073
EarI	CTCTTC	4 cut(s)	243, 778, 1041, 1073
Eco130I	CCWWGG	2 cut(s)	286, 781
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	3 cut(s)	297, 403, 1154
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	286, 781
ErhI	CCWWGG	2 cut(s)	286, 781
FaeI	CATG	2 cut(s)	106, 965
FaiI	YATR	8 cut(s)	104, 188, 446, 851, 947, 963, 1015, 1059
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	296, 362
FatI	CATG	2 cut(s)	102, 961
FbaI	TGATCA	2 cut(s)	108, 976
FblI	GTMKAC	2 cut(s)	970, 988
FokI	GGATG	2 cut(s)	146, 966
FspBI	CTAG	7 cut(s)	252, 344, 384, 635, 674, 684, 803
GlaI	GCGC	1 cut(s)	1074
HaeIII	GGCC	3 cut(s)	39, 69, 1024
HapII	CCGG	2 cut(s)	227, 1021
HhaI	GCGC	1 cut(s)	1075
Hin1II	CATG	2 cut(s)	106, 965
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HinfI	GANTC	1 cut(s)	786
HpaII	CCGG	2 cut(s)	227, 1021
HphI	GGTGA	2 cut(s)	118, 768
Hpy166II	GTNNAC	5 cut(s)	168, 425, 651, 971, 989
Hpy188I	TCNGA	6 cut(s)	55, 113, 223, 340, 646, 871
Hpy188III	TCNNGA	2 cut(s)	242, 962
Hpy8I	GTNNAC	5 cut(s)	168, 425, 651, 971, 989
Hpy99I	CGWCG	2 cut(s)	893, 1055
HpyAV	CCTTC	4 cut(s)	328, 367, 427, 1129
HpyCH4III	ACNGT	3 cut(s)	442, 691, 815
HpyCH4IV	ACGT	2 cut(s)	824, 888
HpyCH4V	TGCA	8 cut(s)	11, 102, 257, 262, 425, 539, 821, 1110
HpyF10VI	GCNNNNNNNGC	6 cut(s)	297, 377, 431, 635, 764, 926
HpyF3I	CTNAG	3 cut(s)	222, 337, 1076
HpySE526I	ACGT	2 cut(s)	824, 888
Hsp92II	CATG	2 cut(s)	106, 965
HspAI	GCGC	1 cut(s)	1073
KroI	GCCGGC	2 cut(s)	226, 1020
KroNI	GCCGGC	2 cut(s)	228, 1022
Ksp22I	TGATCA	2 cut(s)	108, 976
Kzo9I	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
LguI	GCTCTTC	2 cut(s)	243, 1041
LmnI	GCTCC	1 cut(s)	274
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	7 cut(s)	252, 344, 384, 635, 674, 684, 803
MaeII	ACGT	2 cut(s)	824, 888
MaeIII	GTNAC	4 cut(s)	20, 809, 922, 1095
MalI	GATC	6 cut(s)	110, 246, 799, 957, 966, 978
MboI	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
MboII	GAAGA	8 cut(s)	230, 623, 765, 886, 950, 1028, 1060, 1114
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	3 cut(s)	427, 860, 1036
MluCI	AATT	5 cut(s)	58, 88, 120, 388, 1005
MlyI	GAGTC	1 cut(s)	795
MroNI	GCCGGC	2 cut(s)	226, 1020
MseI	TTAA	2 cut(s)	87, 1004
MslI	CAYNNNNRTG	1 cut(s)	1115
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	2 cut(s)	227, 1021
MunI	CAATTG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	81, 1073
MwoI	GCNNNNNNNGC	6 cut(s)	297, 377, 431, 635, 764, 926
NaeI	GCCGGC	2 cut(s)	228, 1022
NdeII	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
NgoMIV	GCCGGC	2 cut(s)	226, 1020
NheI	GCTAGC	2 cut(s)	634, 683
NlaIII	CATG	2 cut(s)	106, 965
NlaIV	GGNNCC	3 cut(s)	284, 415, 951
NmuCI	GTSAC	3 cut(s)	20, 809, 1095
PagI	TCATGA	1 cut(s)	961
PciSI	GCTCTTC	2 cut(s)	243, 1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	1059
PdiI	GCCGGC	2 cut(s)	228, 1022
PflFI	GACNNNGTC	1 cut(s)	1058
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PpuMI	RGGWCCY	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	824
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	284, 415, 951
PspPI	GGNCC	2 cut(s)	283, 1023
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	1058
RsaI	GTAC	1 cut(s)	837
RsaNI	GTAC	1 cut(s)	836
RseI	CAYNNNNRTG	1 cut(s)	1115
SapI	GCTCTTC	2 cut(s)	243, 1041
SaqAI	TTAA	2 cut(s)	87, 1004
Sau3AI	GATC	6 cut(s)	108, 244, 797, 955, 964, 976
Sau96I	GGNCC	2 cut(s)	283, 1023
SchI	GAGTC	1 cut(s)	795
SduI	GDGCHC	3 cut(s)	427, 860, 1036
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	1115
SmlI	CTYRAG	2 cut(s)	71, 589
SmoI	CTYRAG	2 cut(s)	71, 589
Sse9I	AATT	5 cut(s)	58, 88, 120, 388, 1005
SsiI	CCGC	5 cut(s)	79, 368, 431, 929, 1000
SspMI	CTAG	7 cut(s)	252, 344, 384, 635, 674, 684, 803
StyI	CCWWGG	2 cut(s)	286, 781
TaaI	ACNGT	3 cut(s)	442, 691, 815
TaiI	ACGT	2 cut(s)	827, 891
TaqI	TCGA	2 cut(s)	480, 1050
TasI	AATT	5 cut(s)	58, 88, 120, 388, 1005
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	3 cut(s)	371, 434, 932
Tru1I	TTAA	2 cut(s)	87, 1004
Tru9I	TTAA	2 cut(s)	87, 1004
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	3 cut(s)	20, 809, 1095
Tsp45I	GTSAC	3 cut(s)	20, 809, 1095
TspDTI	ATGAA	3 cut(s)	498, 630, 950
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	1058
VneI	GTGCAC	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1088
XmiI	GTMKAC	2 cut(s)	970, 988
XspI	CTAG	7 cut(s)	252, 344, 384, 635, 674, 684, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.