Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Forward (+)

12692895 .. 12698687

Gene Structure 5793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAATGGAGACTGAAAGCAGGATTCTTGTGTTTCAGGTATTCAAGTATGTGGCTTGCAAACAAATGTGACGAATGGTTCGGTGGCCTTTCACAAACTTCTGATAATTTAGATGGCCTTGAGTTCCGCGACCTTAATTACAAGAGGTGCAGGGTGATCAGAGAACCAATTGATACCATGGATGGTTCTGTTGCTTTAGATAAAGCACCTGTGTCCACTCATTTTTGGAAAGCTATGCTGCTGTTTGGATTTCTTACACTTCAAGGCTCTGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGCATTGCAGTCAGTTCCTTTTCTGGGGGACCTTGGCGATATTAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGAACCTTCAGTGCACTTGCGGCAATGACCATCATATCTGTTGGTCTTGGGCGAACTTTTCACTACATCGATGAAATCCTGCCATTCAGGTTTGGCGAGACTGATTTACCCATTGATGATATTGCTGCAGTTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCAAGATGCCACCTCAAGTGATGGTTTGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCCGTTTCAGAGTTTACAGGAAATGGTGCTGGAATACTAGCTGCTGCTGGCACAGTCATTAGCACTTTCGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

270

Amino Acids

29.25

Weight (kDa)

4.51

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	121 - 178	1.8e-17	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	127, 416, 479
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	345, 451
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	45, 263, 618, 652
AluBI	AGCT	4 cut(s)	233, 431, 682, 725
AluI	AGCT	4 cut(s)	233, 431, 682, 725
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	3 cut(s)	4, 551, 774
Alw44I	GTGCAC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	85, 115
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	6 cut(s)	238, 428, 443, 584, 725, 728
ApoI	RAATTY	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	166
AsuNHI	GCTAGC	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	6 cut(s)	225, 430, 440, 571, 712, 715
BccI	CCATC	4 cut(s)	107, 176, 497, 638
BceAI	ACGGC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	3 cut(s)	4, 551, 774
BfaI	CTAG	5 cut(s)	300, 392, 432, 683, 722
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	8 cut(s)	239, 417, 429, 444, 480, 585, 726, 729
BlsI	GCNGC	8 cut(s)	240, 418, 430, 445, 481, 586, 727, 730
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	332, 463
BmsI	GCATC	1 cut(s)	619
BmtI	GCTAGC	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	140, 622
Bsa29I	ATCGAT	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	177, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	305, 489
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	177, 334
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	2 cut(s)	305, 489
BseMII	CTCAG	2 cut(s)	261, 399
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	6 cut(s)	225, 430, 440, 571, 712, 715
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	87, 117
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	344, 410
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	3 cut(s)	4, 551, 774
BsmFI	GGGAC	2 cut(s)	344, 410
BsnI	GGCC	2 cut(s)	87, 117
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	156, 292
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	3 cut(s)	127, 416, 479
BspANI	GGCC	2 cut(s)	87, 117
BspCNI	CTCAG	2 cut(s)	262, 398
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	332, 463
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	686
BspQI	GCTCTTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	305, 489
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	177, 334
BssMI	GATC	2 cut(s)	156, 292
BssT1I	CCWWGG	2 cut(s)	177, 334
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	57, 276, 684, 733
BstDEI	CTNAG	2 cut(s)	270, 385
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	159, 295
BstMAI	GTCTC	3 cut(s)	4, 551, 774
BstMBI	GATC	2 cut(s)	156, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	345, 425, 479, 683
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	6 cut(s)	225, 430, 440, 571, 712, 715
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	87, 117
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	4 cut(s)	57, 276, 684, 733
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	528
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	270, 385
DpnI	GATC	2 cut(s)	158, 294
DpnII	GATC	2 cut(s)	156, 292
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	177, 334
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	345, 451
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	177, 334
ErhI	CCWWGG	2 cut(s)	177, 334
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	50, 179, 236, 494
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	344, 410
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	8 cut(s)	239, 417, 429, 444, 480, 585, 726, 729
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	8 cut(s)	239, 417, 429, 444, 480, 585, 726, 729
FspBI	CTAG	5 cut(s)	300, 392, 432, 683, 722
GluI	GCNGC	8 cut(s)	239, 417, 429, 444, 480, 585, 726, 729
HaeIII	GGCC	2 cut(s)	87, 117
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	216, 473, 699
Hpy188I	TCNGA	5 cut(s)	103, 161, 271, 388, 694
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	216, 473, 699
HpyAV	CCTTC	3 cut(s)	376, 415, 475
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	7 cut(s)	59, 150, 305, 310, 473, 587, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	345, 425, 479, 683
HpyF3I	CTNAG	2 cut(s)	270, 385
Hsp92II	CATG	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	156, 292
LguI	GCTCTTC	1 cut(s)	291
Lsp1109I	GCAGC	6 cut(s)	225, 430, 440, 571, 712, 715
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	5 cut(s)	300, 392, 432, 683, 722
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	158, 294
MboI	GATC	2 cut(s)	156, 292
MboII	GAAGA	2 cut(s)	278, 671
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	4 cut(s)	106, 136, 168, 436
MnlI	CCTC	4 cut(s)	138, 646, 663, 667
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	345, 425, 479, 683
NaeI	GCCGGC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	156, 292
NgoMIV	GCCGGC	1 cut(s)	274
NheI	GCTAGC	1 cut(s)	682
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	332, 463
NmuCI	GTSAC	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	8 cut(s)	240, 418, 430, 445, 481, 586, 727, 730
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	332, 463
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	589
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	8 cut(s)	239, 417, 429, 444, 480, 585, 726, 729
Sau3AI	GATC	2 cut(s)	156, 292
Sau96I	GGNCC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	119, 637
SmoI	CTYRAG	2 cut(s)	119, 637
Sse9I	AATT	4 cut(s)	106, 136, 168, 436
SsiI	CCGC	3 cut(s)	127, 416, 479
SspMI	CTAG	5 cut(s)	300, 392, 432, 683, 722
StyI	CCWWGG	2 cut(s)	177, 334
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	528
TasI	AATT	4 cut(s)	106, 136, 168, 436
TauI	GCSGC	2 cut(s)	419, 482
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	6 cut(s)	238, 428, 443, 584, 725, 728
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	17, 546, 678
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	436
XspI	CTAG	5 cut(s)	300, 392, 432, 683, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.