Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

2151029 .. 2156466

Gene Structure 5438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGAAGCCTGACGCTCTCAGAGAGCGTTTTGGGTGCACATTCACCGTTTAAGCCACCCAATAAGCCATTGTGTTCTTCTTGCTATTTGCAGTCATTCAAGGTTCGGTCTAAGAAGCAATATCTTCAAAACCCATGTATTGTTTCATCAAGGTATTCAAGTATGAGGTTTGCAAACAAATGTGATGAATGGTTCGGTCGCATTTTACAAGCTTCTGATAATTTGGATGGCATTGAGCTCCGCGAGGGTAATTCCAAGAGATGCAGGGTGATCAGAGGACCAACGGGTACCGTGGATGATTCTGTTGCTTTAGATGAAGCACCTATGTCCACTCATTTGTGGAAGGCTATGCTGCTATTTGGGTTTCTTACGCTCCAAGGCTCAGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGTGTTGCAGTCAGTTCCGTTTCTGGAGGACCTTGGCGATATAAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGGACTTTTAGTGCACTTGCGGCAATGACCGTCATATCTGTTGGTCTTGGGAGAACTTTTCACTACGTTGATGAAATCCTACCATTCAGGTTTGGCGACACTGATTTACCCATTGATGATATTGCTGCAGCTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCGAGATGCCGCCTCAAGTGATGGTAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCTGTTTCAGAGTTTACAGGGAATGGTGCTGGAATACTAGCTGCTGCTAGCACAGTCATTAGCACTTTTGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGCACTTGCTGCTGCTTCTTCACCCCTTGGAGTCATTGGAGGAGCATTAGCTGGTCACGGTGTTGCAACTTTGCTTGCAGTGCTGGGAGGCTCTATACTCGGCACATTCTTATCAGAGAAGACTATTGCCTACGTCGGAGGTGTTCTTTTTCTCGTCTTTGCTGCTGTAACAGTGGTAGAGATAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

369

Amino Acids

38.91

Weight (kDa)

4.94

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	159 - 216	3.3e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	286 - 359	3.7e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AccII	CGCG	1 cut(s)	243
AciI	CCGC	4 cut(s)	241, 530, 593, 747
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	100, 128, 159, 732
AluBI	AGCT	8 cut(s)	212, 238, 545, 704, 793, 797, 836, 965
AluI	AGCT	8 cut(s)	212, 238, 545, 704, 793, 797, 836, 965
Alw21I	GWGCWC	3 cut(s)	40, 240, 589
Alw26I	GTCTC	1 cut(s)	885
Alw44I	GTGCAC	2 cut(s)	36, 585
ApaLI	GTGCAC	2 cut(s)	36, 585
ApoI	RAATTY	1 cut(s)	550
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	278, 445
AsuHPI	GGTGA	3 cut(s)	36, 280, 927
AsuNHI	GCTAGC	2 cut(s)	793, 842
AvaII	GGWCC	2 cut(s)	278, 445
BaeGI	GKGCMC	2 cut(s)	40, 589
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	3 cut(s)	40, 240, 589
BccI	CCATC	2 cut(s)	221, 752
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	6 cut(s)	414, 506, 546, 794, 833, 843
BfmI	CTRYAG	1 cut(s)	699
Bme18I	GGWCC	2 cut(s)	278, 445
BmgT120I	GGNCC	2 cut(s)	278, 445
BmiI	GGNNCC	1 cut(s)	289
BmsI	GCATC	2 cut(s)	251, 733
BmtI	GCTAGC	2 cut(s)	797, 846
BpiI	GAAGAC	1 cut(s)	1040
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	736
BsaJI	CCNNGG	4 cut(s)	291, 376, 448, 940
Bse118I	RCCGGY	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	291, 376, 448, 940
BseGI	GGATG	2 cut(s)	232, 301
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	33, 396, 513
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	2 cut(s)	40, 589
BseYI	CCCAGC	2 cut(s)	572, 997
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	3 cut(s)	40, 240, 589
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	2 cut(s)	524, 589
BsmAI	GTCTC	1 cut(s)	885
BsmFI	GGGAC	2 cut(s)	524, 589
Bsp1286I	GDGCHC	3 cut(s)	40, 240, 589
Bsp143I	GATC	2 cut(s)	270, 406
BspACI	CCGC	4 cut(s)	241, 530, 593, 747
BspCNI	CTCAG	3 cut(s)	32, 395, 512
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	703
BspOI	GCTAGC	2 cut(s)	797, 846
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	4 cut(s)	291, 376, 448, 940
BssMI	GATC	2 cut(s)	270, 406
BssT1I	CCWWGG	3 cut(s)	376, 448, 940
Bst4CI	ACNGT	6 cut(s)	48, 292, 604, 850, 974, 1087
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	4 cut(s)	390, 795, 844, 990
BstDEI	CTNAG	4 cut(s)	19, 111, 382, 499
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	232, 301
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	273, 409
BstMAI	GTCTC	1 cut(s)	885
BstMBI	GATC	2 cut(s)	270, 406
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	6 cut(s)	459, 539, 593, 794, 923, 994
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	2 cut(s)	40, 589
BstUI	CGCG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	1040
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	232, 301
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	3 cut(s)	672, 999, 1092
Cac8I	GCNNGC	4 cut(s)	390, 795, 844, 990
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	278, 445
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	135
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	4 cut(s)	19, 111, 382, 499
DpnI	GATC	2 cut(s)	272, 408
DpnII	GATC	2 cut(s)	270, 406
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	3 cut(s)	376, 448, 940
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	278, 445
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	550
EcoT14I	CCWWGG	3 cut(s)	376, 448, 940
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	3 cut(s)	376, 448, 940
FaeI	CATG	1 cut(s)	138
FaiI	YATR	7 cut(s)	136, 164, 326, 350, 458, 608, 1010
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	2 cut(s)	524, 589
FatI	CATG	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	270
FokI	GGATG	2 cut(s)	239, 308
FriOI	GRGCYC	1 cut(s)	240
FspBI	CTAG	6 cut(s)	414, 506, 546, 794, 833, 843
GsaI	CCCAGC	2 cut(s)	576, 1001
GsuI	CTGGAG	1 cut(s)	461
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	299, 945
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	3 cut(s)	36, 280, 927
Hpy166II	GTNNAC	4 cut(s)	38, 330, 587, 810
Hpy188I	TCNGA	8 cut(s)	22, 217, 275, 385, 502, 805, 1030, 1052
Hpy188III	TCNNGA	2 cut(s)	404, 440
Hpy8I	GTNNAC	4 cut(s)	38, 330, 587, 810
Hpy99I	CGWCG	1 cut(s)	1052
HpyAV	CCTTC	3 cut(s)	337, 490, 529
HpyCH4III	ACNGT	6 cut(s)	48, 292, 604, 850, 974, 1087
HpyCH4IV	ACGT	2 cut(s)	639, 1047
HpyCH4V	TGCA	9 cut(s)	38, 91, 173, 264, 424, 587, 701, 980, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	459, 539, 593, 794, 923, 994
HpyF3I	CTNAG	4 cut(s)	19, 111, 382, 499
HpySE526I	ACGT	2 cut(s)	639, 1047
Hsp92II	CATG	1 cut(s)	138
KpnI	GGTACC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	270, 406
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	243, 378, 956
LweI	GCATC	2 cut(s)	251, 733
MaeI	CTAG	6 cut(s)	414, 506, 546, 794, 833, 843
MaeII	ACGT	2 cut(s)	639, 1047
MaeIII	GTNAC	2 cut(s)	968, 1081
MalI	GATC	2 cut(s)	272, 408
MboI	GATC	2 cut(s)	270, 406
MboII	GAAGA	6 cut(s)	69, 116, 392, 782, 924, 1045
MhlI	GDGCHC	3 cut(s)	40, 240, 589
MluCI	AATT	3 cut(s)	220, 250, 550
MlyI	GAGTC	1 cut(s)	954
MmeI	TCCRAC	1 cut(s)	1030
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	1 cut(s)	51
MspI	CCGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	6 cut(s)	459, 539, 593, 794, 923, 994
NaeI	GCCGGC	1 cut(s)	390
NdeII	GATC	2 cut(s)	270, 406
NgoMIV	GCCGGC	1 cut(s)	388
NheI	GCTAGC	2 cut(s)	793, 842
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	1 cut(s)	993
NmuCI	GTSAC	1 cut(s)	968
PciSI	GCTCTTC	1 cut(s)	405
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	299
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PpuMI	RGGWCCY	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	445
PspFI	CCCAGC	2 cut(s)	572, 997
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	278, 445
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	703
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	270, 406
Sau96I	GGNCC	2 cut(s)	278, 445
SchI	GAGTC	1 cut(s)	954
SduI	GDGCHC	3 cut(s)	40, 240, 589
SfaNI	GCATC	2 cut(s)	251, 733
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	2 cut(s)	278, 445
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	3 cut(s)	220, 250, 550
SsiI	CCGC	4 cut(s)	241, 530, 593, 747
SspMI	CTAG	6 cut(s)	414, 506, 546, 794, 833, 843
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	3 cut(s)	376, 448, 940
TaaI	ACNGT	6 cut(s)	48, 292, 604, 850, 974, 1087
TaiI	ACGT	2 cut(s)	642, 1050
TaqII	GACCGA	2 cut(s)	96, 185
TasI	AATT	3 cut(s)	220, 250, 550
TauI	GCSGC	3 cut(s)	533, 596, 749
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	3 cut(s)	679, 999, 1092
TseFI	GTSAC	1 cut(s)	968
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	5 cut(s)	135, 201, 330, 660, 789
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	679, 999, 1092
VneI	GTGCAC	2 cut(s)	36, 585
VpaK11BI	GGWCC	2 cut(s)	278, 445
XapI	RAATTY	1 cut(s)	550
XspI	CTAG	6 cut(s)	414, 506, 546, 794, 833, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.