Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Forward (+)

2049450 .. 2050829

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATGAAATATGGAGAATGTCAGAAAAACAACAACATTATGGCTGCACTAAAGTTGAGCTACAATGCACTGCCACCTCACTTGAAGCCTTGTTTTGCCTTTTGTTCACTTTACCCCAAGGATTATGAATTTGATAGTGAAGAAATAGTCCAATTATGGATGGCACAAGGCTTATTCAAGTCCTCAAGAGAAAATGAAGATTTTGACGAGATGGGCCTAGACTATATAAGGCAGCTTTGTTCTAAGTCTTTGTTTCAACTTGATAATTTTGATGCGAAGACTACTGTGAAGTTCAAAATCCATGATTTAGTGCACGACTTGGCAATATCAGTGGCACAGGTAGAGTTCTCCACAATTAATTTTCGTCCCTCCAGTGCTTTTGAAAAAGTACGACACGTGTCAATATCGAAAAAAGACTTGTCCGGAGAAGAGGCACAAGTCCCAGCATTTATTCTCCAATCACAGAAACTTCGGACCATTCTAAATCTAGATAATGAAGCTGGGATCTCCAATCAATATTTTCTAAAGACATGCATCTTGAGATTCAAGTATCTGCGTGCGCTAGATGTGCGTGGTTCTACTCTTGAGGAGCTACCAAGTTCCATTGGTAACTTGATTCATTTAAGATATCTCAACCTGGATGGAAATACAAAGATAAAACAGCTTCCCAGTTCCATTTGCAAGCTCTTGAATTTGCAGTCCTTAAGCCTTGTCGGTTGTGAGGCACTTGAGAAGTTACCCAAAGGCATAGGGAACTTGATCAATCTCAGATATTTGTTTATAACTACACAGCAGATGTATTTTCCGAAAGGAGTATTTAGACGCCTCACCTTACTTCAATCTTTATTCATTGGGAATTGTGCGAATCTGAAATCTCTGGGCGAAGAGATCGAATACCTCACTAACCTTCGTCAACTGTGGATTGGTTACTGTGGAAATCTGGAGTCCTTGCCACTTAACATGAAGAACTTGACTGCATTACATACTCTGGTGATCTTGGATTGTAAGAAGCTTGAGTTAATGAGGTCGGGAGAAGGTATCAAAGGTCTTCGATCATTATTTATCCAAGGTAGTTCAGATTTTGAGGCTTTGCCCAATTGGCTTCAAGAGTCTGCAAACACTTTACAGAGCATGGCAATCGGAGACTGTGATAATCTCACGGCACTTCCAAAGTGGTTGCAAAATCTCACCTTGTTGGAGCAACTGGTGATTGAGGACTGCCCCAAATTGTCTGCTTTGCCGCAAGGGATGCATAGCCTCACTGCCTTGAGGAAACTGATGATTAGCGGGTGTCCTGAATTGATAAAGAGATGCAAAAGTGAAACAGGAGAGGATTGGTCCAAGATCAAACATGTCCCAGATATTGAACTCGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

459

Amino Acids

52.05

Weight (kDa)

6.72

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	37 - 108	9.5e-22	Disease resistance protein Winged helix domain
LRR_14	PF23598	179 - 379	9.9e-28	Leucine-rich repeat region
LRR_13	PF23286	193 - 340	1.6e-08	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
AccIII	TCCGGA	1 cut(s)	422
AciI	CCGC	2 cut(s)	1241, 1287
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	128, 691
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	823
AfaI	GTAC	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	703
AflIII	ACRYGT	3 cut(s)	394, 396, 1351
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	7 cut(s)	60, 235, 500, 592, 664, 685, 1012
AluI	AGCT	7 cut(s)	60, 235, 500, 592, 664, 685, 1012
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	1137
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	512
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	44, 232
ApoI	RAATTY	2 cut(s)	128, 691
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	214, 474, 1338
AsuHPI	GGTGA	4 cut(s)	820, 1003, 1180, 1219
AvaII	GGWCC	2 cut(s)	474, 1338
BaeGI	GKGCMC	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	284, 1040
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	31, 244
BccI	CCATC	3 cut(s)	154, 205, 635
BceAI	ACGGC	1 cut(s)	1176
BcgI	CGANNNNNNTGC	2 cut(s)	1120, 1154
BciT130I	CCWGG	1 cut(s)	638
BclI	TGATCA	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	1137
BfaI	CTAG	3 cut(s)	218, 488, 563
BfrI	CTTAAG	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	1099
BisI	GCNGC	3 cut(s)	45, 233, 1241
BlsI	GCNGC	3 cut(s)	46, 234, 1242
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	2 cut(s)	474, 1338
BmgT120I	GGNCC	3 cut(s)	214, 474, 1338
BmrFI	CCNGG	1 cut(s)	638
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	4 cut(s)	262, 543, 1239, 1301
BmuI	ACTGGG	1 cut(s)	663
BoxI	GACNNNNGTC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	284, 1040
BpmI	CTGGAG	2 cut(s)	355, 962
BpuEI	CTTGAG	6 cut(s)	169, 559, 605, 749, 1034, 1288
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	823
BsaJI	CCNNGG	2 cut(s)	117, 1066
BsaWI	WCCGGW	1 cut(s)	422
Bse1I	ACTGG	3 cut(s)	372, 669, 1209
BseAI	TCCGGA	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	117, 1066
BseGI	GGATG	3 cut(s)	165, 646, 1254
BseMII	CTCAG	1 cut(s)	781
BseNI	ACTGG	3 cut(s)	372, 669, 1209
BseRI	GAGGAG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	31, 244
BseYI	CCCAGC	2 cut(s)	442, 500
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	3 cut(s)	351, 425, 1340
BsmAI	GTCTC	1 cut(s)	1137
BsmFI	GGGAC	3 cut(s)	351, 425, 1340
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	422
Bsp143I	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
BspACI	CCGC	2 cut(s)	1241, 1287
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	780
BspEI	TCCGGA	1 cut(s)	422
BspPI	GGATC	1 cut(s)	512
BspTI	CTTAAG	1 cut(s)	703
BsrI	ACTGG	3 cut(s)	372, 669, 1209
BssECI	CCNNGG	2 cut(s)	117, 1066
BssMI	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
BssNI	GRCGYC	1 cut(s)	823
BssT1I	CCWWGG	2 cut(s)	117, 1066
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	4 cut(s)	286, 918, 932, 1148
Bst6I	CTCTTC	2 cut(s)	423, 879
BstACI	GRCGYC	1 cut(s)	823
BstAFI	CTTAAG	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	1249
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	558, 683
BstDEI	CTNAG	2 cut(s)	243, 767
BstF5I	GGATG	3 cut(s)	165, 646, 1254
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	6 cut(s)	507, 762, 891, 996, 1055, 1347
BstMAI	GTCTC	1 cut(s)	1137
BstMBI	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
BstMWI	GCNNNNNNNGC	3 cut(s)	568, 1099, 1249
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	534, 1355
BstPAI	GACNNNNGTC	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	31, 244
BstV2I	GAAGAC	2 cut(s)	284, 1040
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	165, 646, 1254
BtsI	GCAGTG	2 cut(s)	68, 1260
BtsIMutI	CAGTG	4 cut(s)	68, 336, 379, 1260
Cac8I	GCNNGC	2 cut(s)	558, 683
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	214, 474, 1338
CseI	GACGC	1 cut(s)	831
Csp6I	GTAC	1 cut(s)	389
CspCI	CAANNNNNGTGG	4 cut(s)	63, 98, 312, 347
CviAII	CATG	5 cut(s)	302, 531, 961, 1132, 1352
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	243, 767
DpnI	GATC	6 cut(s)	506, 761, 890, 995, 1054, 1346
DpnII	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
Eam1104I	CTCTTC	2 cut(s)	423, 879
EarI	CTCTTC	2 cut(s)	423, 879
Eco130I	CCWWGG	2 cut(s)	117, 1066
Eco32I	GATATC	1 cut(s)	629
Eco47I	GGWCC	2 cut(s)	474, 1338
Eco72I	CACGTG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	117, 1066
EcoT22I	ATGCAT	2 cut(s)	536, 1254
ErhI	CCWWGG	2 cut(s)	117, 1066
FaeI	CATG	5 cut(s)	305, 534, 964, 1135, 1355
FaqI	GGGAC	3 cut(s)	351, 425, 1340
FatI	CATG	5 cut(s)	301, 530, 960, 1131, 1351
FauI	CCCGC	1 cut(s)	1280
FbaI	TGATCA	1 cut(s)	759
Fnu4HI	GCNGC	3 cut(s)	45, 233, 1241
FokI	GGATG	3 cut(s)	172, 653, 1261
Fsp4HI	GCNGC	3 cut(s)	45, 233, 1241
FspBI	CTAG	3 cut(s)	218, 488, 563
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	3 cut(s)	45, 233, 1241
GsaI	CCCAGC	2 cut(s)	446, 504
GsuI	CTGGAG	2 cut(s)	355, 962
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	831
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	823
Hin1II	CATG	5 cut(s)	305, 534, 964, 1135, 1355
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	914
HindII	GTYRAC	1 cut(s)	914
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	5 cut(s)	543, 616, 865, 944, 1109
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	4 cut(s)	820, 1003, 1180, 1219
Hpy166II	GTNNAC	3 cut(s)	107, 313, 914
Hpy188I	TCNGA	7 cut(s)	24, 474, 770, 807, 870, 1078, 1142
Hpy8I	GTNNAC	3 cut(s)	107, 313, 914
HpyAV	CCTTC	2 cut(s)	917, 1028
HpyCH4III	ACNGT	4 cut(s)	286, 918, 932, 1148
HpyCH4IV	ACGT	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	568, 1099, 1249
HpyF3I	CTNAG	2 cut(s)	243, 767
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	823
Hsp92II	CATG	5 cut(s)	305, 534, 964, 1135, 1355
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	759
Kzo9I	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
LmnI	GCTCC	2 cut(s)	589, 1198
Lsp1109I	GCAGC	2 cut(s)	31, 244
LweI	GCATC	4 cut(s)	262, 543, 1239, 1301
MaeI	CTAG	3 cut(s)	218, 488, 563
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	608, 735, 926
MalI	GATC	6 cut(s)	506, 761, 890, 995, 1054, 1346
MboI	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
MboII	GAAGA	7 cut(s)	152, 209, 289, 440, 896, 976, 1040
MfeI	CAATTG	1 cut(s)	1096
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	953, 1118
MmeI	TCCRAC	1 cut(s)	1176
Mph1103I	ATGCAT	2 cut(s)	536, 1254
MroI	TCCGGA	1 cut(s)	422
MseI	TTAA	5 cut(s)	357, 623, 704, 957, 1019
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	1096
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	568, 1099, 1249
NdeII	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
NlaIII	CATG	5 cut(s)	305, 534, 964, 1135, 1355
NsiI	ATGCAT	2 cut(s)	536, 1254
NspI	RCATGY	2 cut(s)	534, 1355
PciI	ACATGT	1 cut(s)	1351
PfeI	GAWTC	3 cut(s)	543, 616, 865
PkrI	GCNGC	3 cut(s)	46, 234, 1242
PleI	GAGTC	2 cut(s)	952, 1117
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	952, 1117
Ppu21I	YACGTR	1 cut(s)	397
PscI	ACATGT	1 cut(s)	1351
PshAI	GACNNNNGTC	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	636
PspCI	CACGTG	1 cut(s)	397
PspFI	CCCAGC	2 cut(s)	442, 500
PspGI	CCWGG	1 cut(s)	636
PspPI	GGNCC	3 cut(s)	214, 474, 1338
PsuI	RGATCY	1 cut(s)	504
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	5 cut(s)	357, 623, 704, 957, 1019
SatI	GCNGC	3 cut(s)	45, 233, 1241
Sau3AI	GATC	6 cut(s)	504, 759, 888, 993, 1052, 1344
Sau96I	GGNCC	3 cut(s)	214, 474, 1338
SchI	GAGTC	2 cut(s)	953, 1118
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	4 cut(s)	262, 543, 1239, 1301
SinI	GGWCC	2 cut(s)	474, 1338
SmlI	CTYRAG	7 cut(s)	184, 538, 584, 703, 728, 1013, 1267
SmoI	CTYRAG	7 cut(s)	184, 538, 584, 703, 728, 1013, 1267
SsiI	CCGC	2 cut(s)	1241, 1287
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	3 cut(s)	218, 488, 563
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	2 cut(s)	117, 1066
TaaI	ACNGT	4 cut(s)	286, 918, 932, 1148
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	407, 891, 1051, 1371
TauI	GCSGC	1 cut(s)	1243
TfiI	GAWTC	3 cut(s)	543, 616, 865
Tru1I	TTAA	5 cut(s)	357, 623, 704, 957, 1019
Tru9I	TTAA	5 cut(s)	357, 623, 704, 957, 1019
TscAI	CASTG	4 cut(s)	75, 336, 379, 1267
TseI	GCWGC	2 cut(s)	44, 232
TspDTI	ATGAA	7 cut(s)	20, 141, 210, 510, 608, 838, 977
TspRI	CASTG	4 cut(s)	75, 336, 379, 1267
Vha464I	CTTAAG	1 cut(s)	703
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	474, 1338
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	2 cut(s)	128, 691
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	534, 1355
XspI	CTAG	3 cut(s)	218, 488, 563
Zsp2I	ATGCAT	2 cut(s)	536, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.