Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

23040296 .. 23046358

Gene Structure 6063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1096200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGCAGGTTTCACAACATAATTTCGAGACAATAGCGGGGGTAAAATGCAATTTCAATAAAGCAGATAAAACGGTAAAGGATGCCTTGGCGCTTCGTCGTCCACCCTCTCCTCCCATTGCTTATCTTTCCCACTTGAGTCTCAAACTGTCAACACTTGCAACCCCAAACACCAAAAAGCTTTCACTTTTAGGGAGAGAAAGAGAGGAGAGAGAGAGAGAGAGTTCCAGAATGCGGAGCATAACTCTCTCGGACAGCGTTTTGGGGGTGCACTCGCCGCCTTCGCCATTTCCAAAACCTCCAAAGCCGCCATTGTTATGTTCATCCTGTTACTTGCTTTCTTTCAAATTGCGCTCGAAGAAGCTCATTTCCAAGCTTTCTCTCCCAAACCTAACTCTCGTTTCATCCAGGTGTTCAAGAAAGTGGAATGCGGCAGACACCTCCGAGGAATGGATTGGACGTCTTTTACGAACTTCTGAACATCCAGATGGCCTTGAGTTACAGTACCTTAATCGCAAGAAATGTCGGGTGACCACAGAACCATTTCATGTTGTGGATGATTACGAGGCTTTAGATATAGTCCTTGCAAAGGAAAACTCAAAAGCGGATAGTCACATGGACAGAGAGATGCACATTTCTTATAATCCATTCTCTCATTTTTGGAAGGCTATCATGCTGTGTGGATTTCTTGCACTTCAAGGCTCTGAACCTGCATTTGCTGTTTCTGATCTTGCAAGTGGGTTGCCCTCAATTCCTTTTTTGGGGAACCTTGGCGATCTTAGCACAGGTTTTGCTTCAGCATTTTTGCTCATCTTTTTCTCGGAACTAGGGGACAAGACCTTCTTTATTGCGGCGCTTTTAGCAGCTAGGAATTCAGCTCCAGTTGTTTTTATTGGGACTTTTGGCGCACTTGCGGCAATGACCATCATATCTGTTGTTCTTGGACGAACTTTTCACTATGTCGATGAAATCCTACCATTCAGATTTGGCGAGACTGATCTACCCATTGATGATATTGCTGCAGTTTTGCTCTTGGTTTACTTTGGAGTTTCAACTTTGCGTGATGCCACCTCAAGTGATGGTATGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCTGTTTCAGAGTTTTCAGGAAATGGTTCCGGAATACTAGCTGCTGCTAGCACTGCCGCTAGCACCTTCCTTCTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTCTCCACAATCGCACTTGCTGCAGCCTCTTCACCCCTTGGAGTCATCGGGGGAGCGCTAGCTGGTCACGGTGTTGCAACTTTGCTTGCTGTTTTGGGGGGTTCTTTACTGGGCACATTCTTATCAGAGAAGGCCATTGCGTACGTCGGAGGCGTTCTTTTTCTGGTGTTTGCAGCTGTAACACTGGTTGAGATTGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

476

Amino Acids

51.2

Weight (kDa)

6.39

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	265 - 321	3.8e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	393 - 466	1.1e-21	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AatII	GACGTC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	715
AccIII	TCCGGA	1 cut(s)	1145
AciI	CCGC	9 cut(s)	35, 232, 275, 305, 428, 602, 848, 911, 1173
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	777
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	2 cut(s)	503, 1367
AfeI	AGCGCT	1 cut(s)	1281
AfiI	CCNNNNNNNGG	4 cut(s)	231, 447, 586, 758
AgsI	TTSAA	5 cut(s)	55, 343, 414, 695, 1050
AjnI	CCWGG	1 cut(s)	404
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	20, 143, 983, 1206
Alw44I	GTGCAC	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	1145
Aor51HI	AGCGCT	1 cut(s)	1281
AoxI	GGCC	2 cut(s)	487, 1356
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	7 cut(s)	860, 1016, 1157, 1160, 1244, 1247, 1397
ApoI	RAATTY	1 cut(s)	868
Asp700I	GAANNNNTTC	2 cut(s)	540, 1141
AspLEI	GCGC	5 cut(s)	91, 351, 853, 905, 1282
AsuHPI	GGTGA	2 cut(s)	538, 1248
AsuNHI	GCTAGC	4 cut(s)	1114, 1163, 1175, 1282
BaeGI	GKGCMC	2 cut(s)	270, 1340
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	7 cut(s)	872, 1003, 1144, 1147, 1231, 1259, 1409
BccI	CCATC	3 cut(s)	479, 929, 1070
BciT130I	CCWGG	1 cut(s)	406
BcoDI	GTCTC	4 cut(s)	20, 143, 983, 1206
BfaI	CTAG	8 cut(s)	824, 864, 1115, 1154, 1164, 1176, 1190, 1283
BfmI	CTRYAG	2 cut(s)	1017, 1245
BfoI	RGCGCY	3 cut(s)	92, 854, 1283
BfuAI	ACCTGC	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	764, 1144
BmrFI	CCNGG	1 cut(s)	406
BmrI	ACTGGG	1 cut(s)	1343
BmsI	GCATC	3 cut(s)	70, 615, 1051
BmtI	GCTAGC	4 cut(s)	1118, 1167, 1179, 1286
BmuI	ACTGGG	1 cut(s)	1343
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	154, 512, 1054
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	84, 441, 766, 1261
BsaWI	WCCGGW	1 cut(s)	1145
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 447, 586, 758
Bse1I	ACTGG	3 cut(s)	878, 1338, 1413
Bse3DI	GCAATG	3 cut(s)	114, 921, 1359
BseAI	TCCGGA	1 cut(s)	1145
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	4 cut(s)	84, 441, 766, 1261
BseGI	GGATG	5 cut(s)	85, 320, 401, 478, 559
BseLI	CCNNNNNNNGG	4 cut(s)	231, 447, 586, 758
BseMI	GCAATG	3 cut(s)	114, 921, 1359
BseNI	ACTGG	3 cut(s)	878, 1338, 1413
BseRI	GAGGAG	2 cut(s)	99, 218
BseSI	GKGCMC	2 cut(s)	270, 1340
BseXI	GCAGC	7 cut(s)	872, 1003, 1144, 1147, 1231, 1259, 1409
BshFI	GGCC	2 cut(s)	489, 1358
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	1146
BsiWI	CGTACG	1 cut(s)	1365
BslFI	GGGAC	2 cut(s)	842, 907
BslI	CCNNNNNNNGG	4 cut(s)	231, 447, 586, 758
BsmAI	GTCTC	4 cut(s)	20, 143, 983, 1206
BsmFI	GGGAC	2 cut(s)	842, 907
BsmI	GAATGC	2 cut(s)	234, 430
BsnI	GGCC	2 cut(s)	489, 1358
Bsp1286I	GDGCHC	2 cut(s)	270, 1340
Bsp13I	TCCGGA	1 cut(s)	1145
Bsp143I	GATC	3 cut(s)	724, 772, 994
BspACI	CCGC	9 cut(s)	35, 232, 275, 305, 428, 602, 848, 911, 1173
BspANI	GGCC	2 cut(s)	489, 1358
BspEI	TCCGGA	1 cut(s)	1145
BspLI	GGNNCC	2 cut(s)	764, 1144
BspMAI	CTGCAG	2 cut(s)	1021, 1249
BspMI	ACCTGC	1 cut(s)	715
BspOI	GCTAGC	4 cut(s)	1118, 1167, 1179, 1286
BsrDI	GCAATG	3 cut(s)	114, 921, 1359
BsrI	ACTGG	3 cut(s)	878, 1338, 1413
BssECI	CCNNGG	4 cut(s)	84, 441, 766, 1261
BssMI	GATC	3 cut(s)	724, 772, 994
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	3 cut(s)	84, 766, 1261
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	4 cut(s)	73, 147, 501, 1295
Bst6I	CTCTTC	1 cut(s)	1258
BstACI	GRCGYC	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	1244
BstC8I	GCNNGC	5 cut(s)	1116, 1165, 1177, 1284, 1311
BstDEI	CTNAG	1 cut(s)	776
BstEII	GGTNACC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	5 cut(s)	85, 320, 401, 478, 559
BstH2I	RGCGCY	3 cut(s)	92, 854, 1283
BstHHI	GCGC	5 cut(s)	91, 351, 853, 905, 1282
BstKTI	GATC	3 cut(s)	727, 775, 997
BstMAI	GTCTC	4 cut(s)	20, 143, 983, 1206
BstMBI	GATC	3 cut(s)	724, 772, 994
BstMWI	GCNNNNNNNGC	8 cut(s)	274, 280, 777, 857, 911, 1115, 1169, 1244
BstNI	CCWGG	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	2 cut(s)	1017, 1245
BstSLI	GKGCMC	2 cut(s)	270, 1340
BstV1I	GCAGC	7 cut(s)	872, 1003, 1144, 1147, 1231, 1259, 1409
BsuRI	GGCC	2 cut(s)	489, 1358
BtsCI	GGATG	5 cut(s)	85, 320, 401, 478, 559
BtsI	GCAGTG	1 cut(s)	1167
BtsIMutI	CAGTG	2 cut(s)	1167, 1406
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	5 cut(s)	1116, 1165, 1177, 1284, 1311
CfoI	GCGC	5 cut(s)	91, 351, 853, 905, 1282
Csp6I	GTAC	2 cut(s)	502, 1366
CviAII	CATG	3 cut(s)	545, 613, 670
CviQI	GTAC	2 cut(s)	502, 1366
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	3 cut(s)	726, 774, 996
DpnII	GATC	3 cut(s)	724, 772, 994
Eam1104I	CTCTTC	1 cut(s)	1258
EarI	CTCTTC	1 cut(s)	1258
Eco130I	CCWWGG	3 cut(s)	84, 766, 1261
Eco47III	AGCGCT	1 cut(s)	1281
Eco57I	CTGAAG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	3 cut(s)	84, 766, 1261
ErhI	CCWWGG	3 cut(s)	84, 766, 1261
FaeI	CATG	3 cut(s)	548, 616, 673
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 824, 856
FaqI	GGGAC	2 cut(s)	842, 907
FatI	CATG	3 cut(s)	544, 612, 669
FauI	CCCGC	1 cut(s)	28
FokI	GGATG	5 cut(s)	92, 307, 388, 465, 566
FspBI	CTAG	8 cut(s)	824, 864, 1115, 1154, 1164, 1176, 1190, 1283
GlaI	GCGC	5 cut(s)	90, 350, 852, 904, 1281
GsuI	CTGGAG	1 cut(s)	861
HaeII	RGCGCY	3 cut(s)	92, 854, 1283
HaeIII	GGCC	2 cut(s)	489, 1358
HapII	CCGG	1 cut(s)	1146
HhaI	GCGC	5 cut(s)	91, 351, 853, 905, 1282
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	548, 616, 673
Hin6I	GCGC	5 cut(s)	89, 349, 851, 903, 1280
HinP1I	GCGC	5 cut(s)	89, 349, 851, 903, 1280
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	176, 371
HinfI	GANTC	2 cut(s)	136, 1266
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	2 cut(s)	538, 1248
Hpy166II	GTNNAC	4 cut(s)	101, 150, 268, 1036
Hpy188III	TCNNGA	6 cut(s)	25, 225, 414, 482, 1134, 1146
Hpy8I	GTNNAC	4 cut(s)	101, 150, 268, 1036
Hpy99I	CGWCG	2 cut(s)	99, 1373
HpyAV	CCTTC	6 cut(s)	288, 655, 847, 1192, 1196, 1348
HpyCH4III	ACNGT	4 cut(s)	73, 147, 501, 1295
HpyCH4IV	ACGT	2 cut(s)	457, 1368
HpyF10VI	GCNNNNNNNGC	8 cut(s)	274, 280, 777, 857, 911, 1115, 1169, 1244
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	2 cut(s)	457, 1368
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	548, 616, 673
HspAI	GCGC	5 cut(s)	89, 349, 851, 903, 1280
Kpn2I	TCCGGA	1 cut(s)	1145
Kzo9I	GATC	3 cut(s)	724, 772, 994
LmnI	GCTCC	3 cut(s)	234, 880, 1277
Lsp1109I	GCAGC	7 cut(s)	872, 1003, 1144, 1147, 1231, 1259, 1409
LweI	GCATC	3 cut(s)	70, 615, 1051
MaeI	CTAG	8 cut(s)	824, 864, 1115, 1154, 1164, 1176, 1190, 1283
MaeII	ACGT	2 cut(s)	457, 1368
MaeIII	GTNAC	6 cut(s)	326, 495, 526, 608, 1289, 1402
MalI	GATC	3 cut(s)	726, 774, 996
MboI	GATC	3 cut(s)	724, 772, 994
MboII	GAAGA	3 cut(s)	367, 1103, 1245
MhlI	GDGCHC	2 cut(s)	270, 1340
MluCI	AATT	5 cut(s)	19, 49, 344, 747, 868
MlyI	GAGTC	2 cut(s)	145, 1275
MmeI	TCCRAC	1 cut(s)	1351
MroI	TCCGGA	1 cut(s)	1145
MroXI	GAANNNNTTC	2 cut(s)	540, 1141
MseI	TTAA	2 cut(s)	507, 1426
MslI	CAYNNNNRTG	3 cut(s)	313, 406, 483
MspA1I	CMGCKG	1 cut(s)	1400
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	2 cut(s)	234, 430
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	8 cut(s)	274, 280, 777, 857, 911, 1115, 1169, 1244
NdeII	GATC	3 cut(s)	724, 772, 994
NheI	GCTAGC	4 cut(s)	1114, 1163, 1175, 1282
NlaIII	CATG	3 cut(s)	548, 616, 673
NlaIV	GGNNCC	2 cut(s)	764, 1144
NmuCI	GTSAC	3 cut(s)	526, 608, 1289
PcsI	WCGNNNNNNNCGW	2 cut(s)	463, 1374
PctI	GAATGC	2 cut(s)	234, 430
PdmI	GAANNNNTTC	2 cut(s)	540, 1141
Pfl23II	CGTACG	1 cut(s)	1365
PleI	GAGTC	2 cut(s)	144, 1274
PpsI	GAGTC	2 cut(s)	144, 1274
PsiI	TTATAA	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	404
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	404
PspLI	CGTACG	1 cut(s)	1365
PspN4I	GGNNCC	2 cut(s)	764, 1144
PstI	CTGCAG	2 cut(s)	1021, 1249
PvuII	CAGCTG	1 cut(s)	1400
RsaI	GTAC	2 cut(s)	503, 1367
RsaNI	GTAC	2 cut(s)	502, 1366
RseI	CAYNNNNRTG	3 cut(s)	313, 406, 483
SaqAI	TTAA	2 cut(s)	507, 1426
Sau3AI	GATC	3 cut(s)	724, 772, 994
SchI	GAGTC	2 cut(s)	145, 1275
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	270, 1340
SfaNI	GCATC	3 cut(s)	70, 615, 1051
SfcI	CTRYAG	2 cut(s)	1017, 1245
SmiMI	CAYNNNNRTG	3 cut(s)	313, 406, 483
SmlI	CTYRAG	3 cut(s)	133, 491, 1069
SmoI	CTYRAG	3 cut(s)	133, 491, 1069
Sse9I	AATT	5 cut(s)	19, 49, 344, 747, 868
SsiI	CCGC	9 cut(s)	35, 232, 275, 305, 428, 602, 848, 911, 1173
SspMI	CTAG	8 cut(s)	824, 864, 1115, 1154, 1164, 1176, 1190, 1283
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	3 cut(s)	84, 766, 1261
TaaI	ACNGT	4 cut(s)	73, 147, 501, 1295
TaiI	ACGT	2 cut(s)	460, 1371
TaqI	TCGA	3 cut(s)	24, 353, 960
TasI	AATT	5 cut(s)	19, 49, 344, 747, 868
TauI	GCSGC	6 cut(s)	277, 307, 431, 851, 914, 1175
Tru1I	TTAA	2 cut(s)	507, 1426
Tru9I	TTAA	2 cut(s)	507, 1426
TscAI	CASTG	2 cut(s)	1174, 1413
TseFI	GTSAC	3 cut(s)	526, 608, 1289
TseI	GCWGC	7 cut(s)	860, 1016, 1157, 1160, 1244, 1247, 1397
Tsp45I	GTSAC	3 cut(s)	526, 608, 1289
TspDTI	ATGAA	6 cut(s)	309, 390, 533, 978, 1097, 1110
TspRI	CASTG	2 cut(s)	1174, 1413
VneI	GTGCAC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	868
XmnI	GAANNNNTTC	2 cut(s)	540, 1141
XspI	CTAG	8 cut(s)	824, 864, 1115, 1154, 1164, 1176, 1190, 1283
ZraI	GACGTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.