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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64430 AT1G64430 AT1G64430 |
| fragaria_vesca | FvH4_5g04720 FvH4_5g04720 |
| malus_domestica | MD06G1108400.v1.1 |
| prunus_persica | Prupe.5G121000_v2.0.a1 Prupe.5G121000_v2.0.a1 |
| pyrus_communis | pycom06g10180 |
| rosa_chinensis | RchiOBHm_Chr7g0194681 |
| rosa_laevigata | RLG00000004182 |
| rosa_multiflora | Rmu_sc0018264.1_g000003 Rmu_sc0023803.1_g000001 Rmu_sc0034112.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00261160 |
| rosa_rugosa | Rorug07G0017200 Rorug07G0017300 Rorug07G0017300 |
| rosa_samantha | Rh7AG144700 Rh7BG144700 Rh7CG148500 Rh7DG145900 |
| rosa_wichuraiana | Rw7G012360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 876 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 155, 635 |
| AccI | GTMKAC | 1 cut(s) | 127 |
| AccII | CGCG | 3 cut(s) | 269, 300, 357 |
| AccIII | TCCGGA | 1 cut(s) | 32 |
| AciI | CCGC | 7 cut(s) | 186, 189, 240, 300, 342, 357, 906 |
| AclWI | GGATC | 1 cut(s) | 1127 |
| AcsI | RAATTY | 2 cut(s) | 1198, 1374 |
| AcuI | CTGAAG | 2 cut(s) | 777, 1656 |
| AfaI | GTAC | 5 cut(s) | 467, 813, 829, 1405, 1431 |
| AfeI | AGCGCT | 1 cut(s) | 264 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 155, 562, 635 |
| AflII | CTTAAG | 1 cut(s) | 499 |
| AgeI | ACCGGT | 1 cut(s) | 843 |
| AgsI | TTSAA | 8 cut(s) | 106, 314, 320, 461, 946, 1500, 1604, 1613 |
| AjnI | CCWGG | 1 cut(s) | 976 |
| Alw21I | GWGCWC | 3 cut(s) | 723, 801, 1293 |
| Alw26I | GTCTC | 3 cut(s) | 56, 153, 851 |
| Alw44I | GTGCAC | 1 cut(s) | 797 |
| AlwI | GGATC | 1 cut(s) | 1127 |
| Ama87I | CYCGRG | 1 cut(s) | 1364 |
| Aor13HI | TCCGGA | 1 cut(s) | 32 |
| Aor51HI | AGCGCT | 1 cut(s) | 264 |
| AoxI | GGCC | 3 cut(s) | 449, 1034, 1650 |
| ApaLI | GTGCAC | 1 cut(s) | 797 |
| ApeKI | GCWGC | 7 cut(s) | 231, 344, 491, 908, 1115, 1264, 1541 |
| ApoI | RAATTY | 2 cut(s) | 1198, 1374 |
| AsiGI | ACCGGT | 1 cut(s) | 843 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1495 |
| AspLEI | GCGC | 3 cut(s) | 265, 659, 877 |
| AspS9I | GGNCC | 2 cut(s) | 367, 938 |
| AsuHPI | GGTGA | 1 cut(s) | 704 |
| AvaI | CYCGRG | 1 cut(s) | 1364 |
| AvaII | GGWCC | 2 cut(s) | 367, 938 |
| BaeGI | GKGCMC | 1 cut(s) | 801 |
| BanII | GRGCYC | 2 cut(s) | 723, 756 |
| BauI | CACGAG | 1 cut(s) | 59 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| Bbv12I | GWGCWC | 3 cut(s) | 723, 801, 1293 |
| BbvCI | CCTCAGC | 1 cut(s) | 561 |
| BbvI | GCAGC | 7 cut(s) | 243, 331, 478, 895, 1102, 1276, 1553 |
| BccI | CCATC | 4 cut(s) | 157, 429, 1004, 1043 |
| BceAI | ACGGC | 5 cut(s) | 146, 227, 312, 525, 651 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 854, 888, 1466, 1500 |
| BciT130I | CCWGG | 1 cut(s) | 978 |
| BciVI | GTATCC | 1 cut(s) | 247 |
| BcoDI | GTCTC | 3 cut(s) | 56, 153, 851 |
| BfaI | CTAG | 5 cut(s) | 702, 1041, 1178, 1442, 1488 |
| BfoI | RGCGCY | 1 cut(s) | 266 |
| BfrI | CTTAAG | 1 cut(s) | 499 |
| BfuI | GTATCC | 1 cut(s) | 247 |
| BglII | AGATCT | 2 cut(s) | 1059, 1309 |
| BisI | GCNGC | 9 cut(s) | 189, 232, 345, 358, 492, 909, 1116, 1265, 1542 |
| BlsI | GCNGC | 9 cut(s) | 190, 233, 346, 359, 493, 910, 1117, 1266, 1543 |
| Bme1390I | CCNGG | 1 cut(s) | 978 |
| Bme18I | GGWCC | 2 cut(s) | 367, 938 |
| BmeT110I | CYCGRG | 1 cut(s) | 1364 |
| BmgT120I | GGNCC | 2 cut(s) | 367, 938 |
| BmiI | GGNNCC | 3 cut(s) | 184, 570, 939 |
| BmrFI | CCNGG | 1 cut(s) | 978 |
| BmrI | ACTGGG | 1 cut(s) | 1131 |
| BmsI | GCATC | 3 cut(s) | 241, 911, 1102 |
| BmuI | ACTGGG | 1 cut(s) | 1131 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 671, 703 |
| BpmI | CTGGAG | 3 cut(s) | 999, 1128, 1277 |
| Bpu10I | CCTNAGC | 4 cut(s) | 561, 1031, 1215, 1233 |
| Bsa29I | ATCGAT | 2 cut(s) | 433, 1476 |
| BsaI | GGTCTC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 2 cut(s) | 976, 1545 |
| BsaWI | WCCGGW | 4 cut(s) | 32, 162, 824, 843 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 876, 906, 1179, 1209 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 155, 562, 635 |
| Bse118I | RCCGGY | 2 cut(s) | 109, 843 |
| Bse1I | ACTGG | 3 cut(s) | 141, 1111, 1137 |
| Bse3DI | GCAATG | 2 cut(s) | 367, 1569 |
| BseAI | TCCGGA | 1 cut(s) | 32 |
| BseBI | CCWGG | 1 cut(s) | 978 |
| BseCI | ATCGAT | 2 cut(s) | 433, 1476 |
| BseDI | CCNNGG | 2 cut(s) | 976, 1545 |
| BseGI | GGATG | 3 cut(s) | 902, 1015, 1347 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 155, 562, 635 |
| BseMI | GCAATG | 2 cut(s) | 367, 1569 |
| BseMII | CTCAG | 8 cut(s) | 218, 552, 726, 769, 846, 1160, 1170, 1224 |
| BseNI | ACTGG | 3 cut(s) | 141, 1111, 1137 |
| BseRI | GAGGAG | 1 cut(s) | 578 |
| BseSI | GKGCMC | 1 cut(s) | 801 |
| BseXI | GCAGC | 7 cut(s) | 243, 331, 478, 895, 1102, 1276, 1553 |
| Bsh1236I | CGCG | 3 cut(s) | 269, 300, 357 |
| BshFI | GGCC | 3 cut(s) | 451, 1036, 1652 |
| BshTI | ACCGGT | 1 cut(s) | 843 |
| BshVI | ATCGAT | 2 cut(s) | 433, 1476 |
| BsiHKAI | GWGCWC | 3 cut(s) | 723, 801, 1293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1364 |
| BsiSI | CCGG | 5 cut(s) | 33, 110, 163, 825, 844 |
| BslFI | GGGAC | 1 cut(s) | 951 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 155, 562, 635 |
| BsmAI | GTCTC | 3 cut(s) | 56, 153, 851 |
| BsmFI | GGGAC | 1 cut(s) | 951 |
| BsnI | GGCC | 3 cut(s) | 451, 1036, 1652 |
| Bso31I | GGTCTC | 1 cut(s) | 153 |
| BsoBI | CYCGRG | 1 cut(s) | 1364 |
| Bsp1286I | GDGCHC | 4 cut(s) | 723, 756, 801, 1293 |
| Bsp13I | TCCGGA | 1 cut(s) | 32 |
| Bsp1407I | TGTACA | 1 cut(s) | 465 |
| Bsp143I | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| Bsp68I | TCGCGA | 1 cut(s) | 269 |
| BspACI | CCGC | 7 cut(s) | 186, 189, 240, 300, 342, 357, 906 |
| BspANI | GGCC | 3 cut(s) | 451, 1036, 1652 |
| BspCNI | CTCAG | 8 cut(s) | 219, 553, 725, 768, 847, 1159, 1169, 1225 |
| BspDI | ATCGAT | 2 cut(s) | 433, 1476 |
| BspEI | TCCGGA | 1 cut(s) | 32 |
| BspFNI | CGCG | 3 cut(s) | 269, 300, 357 |
| BspLI | GGNNCC | 3 cut(s) | 184, 570, 939 |
| BspPI | GGATC | 1 cut(s) | 1127 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspTI | CTTAAG | 1 cut(s) | 499 |
| BspTNI | GGTCTC | 1 cut(s) | 153 |
| BsrDI | GCAATG | 2 cut(s) | 367, 1569 |
| BsrFI | RCCGGY | 2 cut(s) | 109, 843 |
| BsrGI | TGTACA | 1 cut(s) | 465 |
| BsrI | ACTGG | 3 cut(s) | 141, 1111, 1137 |
| BssAI | RCCGGY | 2 cut(s) | 109, 843 |
| BssECI | CCNNGG | 2 cut(s) | 976, 1545 |
| BssMI | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| BssNAI | GTATAC | 1 cut(s) | 128 |
| BssSI | CACGAG | 1 cut(s) | 59 |
| Bst1107I | GTATAC | 1 cut(s) | 128 |
| Bst2BI | CACGAG | 1 cut(s) | 59 |
| Bst2UI | CCWGG | 1 cut(s) | 978 |
| Bst4CI | ACNGT | 5 cut(s) | 1168, 1195, 1243, 1403, 1529 |
| Bst6I | CTCTTC | 3 cut(s) | 78, 711, 1608 |
| BstAFI | CTTAAG | 1 cut(s) | 499 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 908 |
| BstAUI | TGTACA | 1 cut(s) | 465 |
| BstC8I | GCNNGC | 4 cut(s) | 267, 399, 1361, 1395 |
| BstF5I | GGATG | 3 cut(s) | 902, 1015, 1347 |
| BstFNI | CGCG | 3 cut(s) | 269, 300, 357 |
| BstH2I | RGCGCY | 1 cut(s) | 266 |
| BstHHI | GCGC | 3 cut(s) | 265, 659, 877 |
| BstKTI | GATC | 8 cut(s) | 283, 433, 1062, 1135, 1312, 1471, 1476, 1593 |
| BstMAI | GTCTC | 3 cut(s) | 56, 153, 851 |
| BstMBI | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 260, 663, 908, 1100, 1187, 1225, 1234, 1547 |
| BstNI | CCWGG | 1 cut(s) | 978 |
| BstSCI | CCNGG | 1 cut(s) | 976 |
| BstSLI | GKGCMC | 1 cut(s) | 801 |
| BstUI | CGCG | 3 cut(s) | 269, 300, 357 |
| BstV1I | GCAGC | 7 cut(s) | 243, 331, 478, 895, 1102, 1276, 1553 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| BstX2I | RGATCY | 2 cut(s) | 1059, 1309 |
| BstYI | RGATCY | 2 cut(s) | 1059, 1309 |
| BstZ17I | GTATAC | 1 cut(s) | 128 |
| Bsu15I | ATCGAT | 2 cut(s) | 433, 1476 |
| BsuI | GTATCC | 1 cut(s) | 247 |
| BsuRI | GGCC | 3 cut(s) | 451, 1036, 1652 |
| BsuTUI | ATCGAT | 2 cut(s) | 433, 1476 |
| BtgZI | GCGATG | 1 cut(s) | 284 |
| BtsCI | GGATG | 3 cut(s) | 902, 1015, 1347 |
| BtsI | GCAGTG | 2 cut(s) | 1389, 1557 |
| BtsIMutI | CAGTG | 5 cut(s) | 801, 852, 1389, 1534, 1557 |
| BtuMI | TCGCGA | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 4 cut(s) | 267, 399, 1361, 1395 |
| CfoI | GCGC | 3 cut(s) | 265, 659, 877 |
| Cfr10I | RCCGGY | 2 cut(s) | 109, 843 |
| Cfr13I | GGNCC | 2 cut(s) | 367, 938 |
| ClaI | ATCGAT | 2 cut(s) | 433, 1476 |
| CseI | GACGC | 1 cut(s) | 1286 |
| Csp6I | GTAC | 5 cut(s) | 466, 812, 828, 1404, 1430 |
| CspAI | ACCGGT | 1 cut(s) | 843 |
| CviAII | CATG | 4 cut(s) | 86, 394, 635, 1594 |
| CviQI | GTAC | 5 cut(s) | 466, 812, 828, 1404, 1430 |
| DpnI | GATC | 8 cut(s) | 282, 432, 1061, 1134, 1311, 1470, 1475, 1592 |
| DpnII | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| Eam1104I | CTCTTC | 3 cut(s) | 78, 711, 1608 |
| EarI | CTCTTC | 3 cut(s) | 78, 711, 1608 |
| EciI | GGCGGA | 2 cut(s) | 175, 229 |
| Ecl136II | GAGCTC | 1 cut(s) | 721 |
| Eco147I | AGGCCT | 2 cut(s) | 451, 1036 |
| Eco24I | GRGCYC | 2 cut(s) | 723, 756 |
| Eco31I | GGTCTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 2 cut(s) | 367, 938 |
| Eco47III | AGCGCT | 1 cut(s) | 264 |
| Eco53kI | GAGCTC | 1 cut(s) | 721 |
| Eco57I | CTGAAG | 2 cut(s) | 777, 1656 |
| Eco88I | CYCGRG | 1 cut(s) | 1364 |
| EcoICRI | GAGCTC | 1 cut(s) | 721 |
| EcoO109I | RGGNCCY | 1 cut(s) | 938 |
| EcoRII | CCWGG | 1 cut(s) | 976 |
| EcoT38I | GRGCYC | 2 cut(s) | 723, 756 |
| FaeI | CATG | 4 cut(s) | 89, 397, 638, 1597 |
| FaqI | GGGAC | 1 cut(s) | 951 |
| FatI | CATG | 4 cut(s) | 85, 393, 634, 1593 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| FblI | GTMKAC | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 9 cut(s) | 189, 232, 345, 358, 492, 909, 1116, 1265, 1542 |
| FokI | GGATG | 3 cut(s) | 889, 1022, 1354 |
| FriOI | GRGCYC | 2 cut(s) | 723, 756 |
| Fsp4HI | GCNGC | 9 cut(s) | 189, 232, 345, 358, 492, 909, 1116, 1265, 1542 |
| FspBI | CTAG | 5 cut(s) | 702, 1041, 1178, 1442, 1488 |
| FspI | TGCGCA | 1 cut(s) | 876 |
| GlaI | GCGC | 3 cut(s) | 264, 658, 876 |
| GluI | GCNGC | 9 cut(s) | 189, 232, 345, 358, 492, 909, 1116, 1265, 1542 |
| GsuI | CTGGAG | 3 cut(s) | 999, 1128, 1277 |
| HaeII | RGCGCY | 1 cut(s) | 266 |
| HaeIII | GGCC | 3 cut(s) | 451, 1036, 1652 |
| HapII | CCGG | 5 cut(s) | 33, 110, 163, 825, 844 |
| HgaI | GACGC | 1 cut(s) | 1286 |
| HhaI | GCGC | 3 cut(s) | 265, 659, 877 |
| Hin1II | CATG | 4 cut(s) | 89, 397, 638, 1597 |
| Hin6I | GCGC | 3 cut(s) | 263, 657, 875 |
| HinP1I | GCGC | 3 cut(s) | 263, 657, 875 |
| HinfI | GANTC | 9 cut(s) | 4, 36, 45, 64, 306, 512, 710, 817, 1019 |
| HpaII | CCGG | 5 cut(s) | 33, 110, 163, 825, 844 |
| HphI | GGTGA | 1 cut(s) | 704 |
| Hpy166II | GTNNAC | 7 cut(s) | 128, 367, 466, 468, 799, 925, 1555 |
| Hpy188I | TCNGA | 9 cut(s) | 228, 280, 511, 530, 597, 645, 715, 758, 1473 |
| Hpy188III | TCNNGA | 6 cut(s) | 33, 212, 268, 766, 1366, 1442 |
| Hpy8I | GTNNAC | 7 cut(s) | 128, 367, 466, 468, 799, 925, 1555 |
| Hpy99I | CGWCG | 4 cut(s) | 218, 221, 1302, 1649 |
| HpyAV | CCTTC | 6 cut(s) | 831, 875, 924, 1097, 1220, 1420 |
| HpyCH4III | ACNGT | 5 cut(s) | 1168, 1195, 1243, 1403, 1529 |
| HpyCH4V | TGCA | 5 cut(s) | 623, 799, 902, 1094, 1541 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 260, 663, 908, 1100, 1187, 1225, 1234, 1547 |
| Hsp92II | CATG | 4 cut(s) | 89, 397, 638, 1597 |
| HspAI | GCGC | 3 cut(s) | 263, 657, 875 |
| Kpn2I | TCCGGA | 1 cut(s) | 32 |
| Kzo9I | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 8 cut(s) | 165, 188, 916, 967, 1187, 1233, 1296, 1673 |
| Lsp1109I | GCAGC | 7 cut(s) | 243, 331, 478, 895, 1102, 1276, 1553 |
| LweI | GCATC | 3 cut(s) | 241, 911, 1102 |
| MaeI | CTAG | 5 cut(s) | 702, 1041, 1178, 1442, 1488 |
| MaeIII | GTNAC | 6 cut(s) | 422, 668, 692, 892, 1149, 1168 |
| MalI | GATC | 8 cut(s) | 282, 432, 1061, 1134, 1311, 1470, 1475, 1592 |
| MboI | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| MfeI | CAATTG | 1 cut(s) | 897 |
| MflI | RGATCY | 2 cut(s) | 1059, 1309 |
| MhlI | GDGCHC | 4 cut(s) | 723, 756, 801, 1293 |
| MluCI | AATT | 6 cut(s) | 582, 661, 897, 1095, 1198, 1374 |
| MlyI | GAGTC | 4 cut(s) | 13, 58, 704, 811 |
| MroI | TCCGGA | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1495 |
| MseI | TTAA | 4 cut(s) | 480, 500, 518, 1678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 2 cut(s) | 344, 908 |
| MspCI | CTTAAG | 1 cut(s) | 499 |
| MspI | CCGG | 5 cut(s) | 33, 110, 163, 825, 844 |
| MspR9I | CCNGG | 1 cut(s) | 978 |
| MunI | CAATTG | 1 cut(s) | 897 |
| MvaI | CCWGG | 1 cut(s) | 978 |
| MvnI | CGCG | 3 cut(s) | 269, 300, 357 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 260, 663, 908, 1100, 1187, 1225, 1234, 1547 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NdeII | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| NlaIII | CATG | 4 cut(s) | 89, 397, 638, 1597 |
| NlaIV | GGNNCC | 3 cut(s) | 184, 570, 939 |
| NmeAIII | GCCGAG | 2 cut(s) | 702, 1570 |
| NmuCI | GTSAC | 3 cut(s) | 422, 692, 892 |
| NruI | TCGCGA | 1 cut(s) | 269 |
| NsbI | TGCGCA | 1 cut(s) | 876 |
| PaeR7I | CTCGAG | 1 cut(s) | 1364 |
| PceI | AGGCCT | 2 cut(s) | 451, 1036 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1650 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1495 |
| PfeI | GAWTC | 5 cut(s) | 36, 45, 306, 512, 1019 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 155, 635 |
| PinAI | ACCGGT | 1 cut(s) | 843 |
| PkrI | GCNGC | 9 cut(s) | 190, 233, 346, 359, 493, 910, 1117, 1266, 1543 |
| PleI | GAGTC | 4 cut(s) | 12, 58, 704, 811 |
| PpsI | GAGTC | 4 cut(s) | 12, 58, 704, 811 |
| PpuMI | RGGWCCY | 1 cut(s) | 938 |
| Psp124BI | GAGCTC | 1 cut(s) | 723 |
| Psp5II | RGGWCCY | 1 cut(s) | 938 |
| Psp6I | CCWGG | 1 cut(s) | 976 |
| PspGI | CCWGG | 1 cut(s) | 976 |
| PspN4I | GGNNCC | 3 cut(s) | 184, 570, 939 |
| PspPI | GGNCC | 2 cut(s) | 367, 938 |
| PspPPI | RGGWCCY | 1 cut(s) | 938 |
| PsuI | RGATCY | 2 cut(s) | 1059, 1309 |
| RruI | TCGCGA | 1 cut(s) | 269 |
| RsaI | GTAC | 5 cut(s) | 467, 813, 829, 1405, 1431 |
| RsaNI | GTAC | 5 cut(s) | 466, 812, 828, 1404, 1430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SacI | GAGCTC | 1 cut(s) | 723 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| SaqAI | TTAA | 4 cut(s) | 480, 500, 518, 1678 |
| SatI | GCNGC | 9 cut(s) | 189, 232, 345, 358, 492, 909, 1116, 1265, 1542 |
| Sau3AI | GATC | 8 cut(s) | 280, 430, 1059, 1132, 1309, 1468, 1473, 1590 |
| Sau96I | GGNCC | 2 cut(s) | 367, 938 |
| SchI | GAGTC | 4 cut(s) | 13, 58, 704, 811 |
| ScrFI | CCNGG | 1 cut(s) | 978 |
| SduI | GDGCHC | 4 cut(s) | 723, 756, 801, 1293 |
| SfaNI | GCATC | 3 cut(s) | 241, 911, 1102 |
| Sfr274I | CTCGAG | 1 cut(s) | 1364 |
| SinI | GGWCC | 2 cut(s) | 367, 938 |
| SlaI | CTCGAG | 1 cut(s) | 1364 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SmlI | CTYRAG | 2 cut(s) | 499, 1364 |
| SmoI | CTYRAG | 2 cut(s) | 499, 1364 |
| Sse9I | AATT | 6 cut(s) | 582, 661, 897, 1095, 1198, 1374 |
| SseBI | AGGCCT | 2 cut(s) | 451, 1036 |
| SsiI | CCGC | 7 cut(s) | 186, 189, 240, 300, 342, 357, 906 |
| SspMI | CTAG | 5 cut(s) | 702, 1041, 1178, 1442, 1488 |
| SstI | GAGCTC | 1 cut(s) | 723 |
| StuI | AGGCCT | 2 cut(s) | 451, 1036 |
| StyD4I | CCNGG | 1 cut(s) | 976 |
| TaaI | ACNGT | 5 cut(s) | 1168, 1195, 1243, 1403, 1529 |
| TasI | AATT | 6 cut(s) | 582, 661, 897, 1095, 1198, 1374 |
| TatI | WGTACW | 1 cut(s) | 465 |
| TauI | GCSGC | 2 cut(s) | 191, 360 |
| TfiI | GAWTC | 5 cut(s) | 36, 45, 306, 512, 1019 |
| Tru1I | TTAA | 4 cut(s) | 480, 500, 518, 1678 |
| Tru9I | TTAA | 4 cut(s) | 480, 500, 518, 1678 |
| TscAI | CASTG | 5 cut(s) | 801, 859, 1389, 1534, 1557 |
| TseFI | GTSAC | 3 cut(s) | 422, 692, 892 |
| TseI | GCWGC | 7 cut(s) | 231, 344, 491, 908, 1115, 1264, 1541 |
| Tsp45I | GTSAC | 3 cut(s) | 422, 692, 892 |
| TspDTI | ATGAA | 1 cut(s) | 273 |
| TspGWI | ACGGA | 1 cut(s) | 13 |
| TspRI | CASTG | 5 cut(s) | 801, 859, 1389, 1534, 1557 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 155, 635 |
| Vha464I | CTTAAG | 1 cut(s) | 499 |
| VneI | GTGCAC | 1 cut(s) | 797 |
| VpaK11BI | GGWCC | 2 cut(s) | 367, 938 |
| XapI | RAATTY | 2 cut(s) | 1198, 1374 |
| XbaI | TCTAGA | 1 cut(s) | 1441 |
| XhoI | CTCGAG | 1 cut(s) | 1364 |
| XmiI | GTMKAC | 1 cut(s) | 127 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1495 |
| XspI | CTAG | 5 cut(s) | 702, 1041, 1178, 1442, 1488 |