pycom06g10180

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
15566492 .. 15570384
3893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10180.2

Sequence Viewer

Length: 1650 bp
ATGACTCTAATAAACCTCAGCTCCCTCTCCCCATGGCTCTCCCGCCTCTCTCACCACCCTTCTCCGCCCCTTCCCATCTTTCCCACCACCACTTTTTTGTTCAGAAATATTCAATCCACTTCCATCAACTTCTCAAAGCTCCTCAGAGTAAAAGCCTCATTGGGGGAGACCCAAAACGGTAGTGGGTTGGCAAAGGACTCTGTTTCCGAGTTGTTAGATGACGAGTTGCTTAGTGGAGTTTCCGGTGCTAAAGATGCCCAGGAAGCACTCCAGGTGATCGCTGAAATGTCTGACAGAAATGGTGGTTTAGTGAGTGTATCTGATTGTTGTGCTATTATATCGGCTGCCCTAAAGCGGAACAACTCCGACTTGGCTCTCTCTGTTTTCTATGAAATGCGTGCGAGTTTTGATCAAGGTGTTAATGAAAATGGCCCTCTTGTTGAGAGGTGGAAATGGTCCAGACCAGATGTGCATGTTTACACATCGTTGATTCTGGGTCTAGCTGCATCCCTTAGGGTTTCTGATGCCCTTAGGATGATCAACAATGTTTGCCGAGTTGGAGTATCTCCTGCTGAGGAGGTCCCATTTGGGAAGGTTGTTAGGTGTCCTAGCTGTATGATAGCTGTTGCTGTTGCACAGCCACAACATGGTATTCAGGTAGTGTCGTGTGCAAAGTGCTGCTACCAGTATGAACTTATTTCTGGCAACATAGCTAGTATTGAGTCGGAAGAAATCAGCATGGATGTTCCGGCTTGGAAAAGGGGACTAAGATTCCTGAACATAATGAAGCAAAGTATTCCTGCGGCTGTCCACTCCATTGTGGTACAAACCCCTTCTGGTATGGCACGTACAAACAGGTTTGCTACTGAAACAGTTGATCTCCCAGCACAGGAAGGGGAAAGGGTAACGATTGCTCTAGCTGCTCCATTAAGTGTTTACAGAGAGGTCGGTCCCTTAAAATTTAGTCCTAAGGCCCCAAATTTTTACCCTGGGGAGCCTATCTGCTTGACAAACCATGAAGATGACCGGGAGTCAAAACTATTAAGAGCCCCTGTAAAGGATGGAGGACCGTTGCTAACTAACCCCTCCATCCTTTTTCCAATTGTTGCGGTTTTGGCCTCTGGAAATGCCGCCTCCGGAGTTATAGACCCCATCTTCCCCCAATTCCTTCCAGTTGCTGCAGTAGCGTCTCTTGCTGTTGGAGTTACTCTGAACAAATTGGTTGTCCCCCAATTAAATCGTCTTCCTCGGAGAATAGTGGATACAGTTGCCATCAAGCAGCAACTTTTATCGCAATATGACACACTCCAATCTCGTATAAAGGGCCTAAAAGAATCTGCTGAAAAAGAGGTCTGGATGTTGGCTCGGATGTGCCAACTTGAGAACAAAATCGTTGCTGTAGGAGAGCCTTCTTATCGTGCTCGAAGAAGTAAAGTCAAAAGGGTTCGAGAAGGCTTGGAAAATTCTCTCAGGGGACGGATTGAACTTATTGACAGCTATGCAAGGATTTCTTCCATGATTGAAATTGAGGTAGAACTGGACTCCGATGTTCTTGCTGCCGAAGCAGCAAGCACACTGGAAAATGTTGCTGAACAGATACAGCAAACCATGGAGCTAGAAAATCTTGAAGAGATGGAGAATACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

550

Amino Acids

59.93

Weight (kDa)

5.75

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 647
AccIII TCCGGA 1 cut(s) 1136
AciI CCGC 6 cut(s) 43, 65, 355, 803, 1109, 1131
AcsI RAATTY 3 cut(s) 959, 979, 1462
AfaI GTAC 2 cut(s) 825, 850
AfiI CCNNNNNNNGG 5 cut(s) 162, 354, 647, 889, 1057
AgsI TTSAA 4 cut(s) 113, 1484, 1523, 1628
AhdI GACNNNNNGTC 1 cut(s) 1030
AjnI CCWGG 3 cut(s) 258, 270, 988
AluBI AGCT 9 cut(s) 21, 139, 503, 612, 623, 713, 920, 1497, 1615
AluI AGCT 9 cut(s) 21, 139, 503, 612, 623, 713, 920, 1497, 1615
Alw21I GWGCWC 1 cut(s) 1423
Alw26I GTCTC 2 cut(s) 161, 1194
AlwNI CAGNNNCTG 1 cut(s) 1178
Aor13HI TCCGGA 1 cut(s) 1136
AoxI GGCC 4 cut(s) 430, 972, 1116, 1324
ApeKI GCWGC 8 cut(s) 344, 503, 678, 920, 1178, 1279, 1556, 1565
ApoI RAATTY 3 cut(s) 959, 979, 1462
ArsI GACNNNNNNTTYG 2 cut(s) 1209, 1241
AspS9I GGNCC 7 cut(s) 431, 456, 580, 950, 973, 1067, 1324
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 2 cut(s) 44, 286
AvaII GGWCC 4 cut(s) 456, 580, 950, 1067
AxyI CCTNAGG 3 cut(s) 512, 530, 969
BanII GRGCYC 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 1235
Bbv12I GWGCWC 1 cut(s) 1423
BbvCI CCTCAGC 2 cut(s) 17, 573
BbvI GCAGC 8 cut(s) 331, 490, 665, 907, 1165, 1291, 1543, 1577
BccI CCATC 7 cut(s) 83, 131, 1055, 1097, 1160, 1280, 1627
BcgI CGANNNNNNTGC 2 cut(s) 1535, 1569
BciT130I CCWGG 3 cut(s) 260, 272, 990
BciVI GTATCC 1 cut(s) 1255
BclI TGATCA 2 cut(s) 409, 537
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 2 cut(s) 161, 1194
BfaI CTAG 5 cut(s) 500, 609, 714, 917, 1616
BfmI CTRYAG 2 cut(s) 1179, 1398
BfuI GTATCC 1 cut(s) 1255
Bme1390I CCNGG 4 cut(s) 260, 272, 990, 1028
Bme18I GGWCC 4 cut(s) 456, 580, 950, 1067
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmgT120I GGNCC 7 cut(s) 431, 456, 580, 950, 973, 1067, 1324
BmiI GGNNCC 4 cut(s) 582, 952, 975, 996
BmrFI CCNGG 4 cut(s) 260, 272, 990, 1028
BmsI GCATC 3 cut(s) 244, 514, 515
BpiI GAAGAC 1 cut(s) 1235
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 2 cut(s) 17, 573
BpuEI CTTGAG 1 cut(s) 1400
BpuMI CCSGG 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 848
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BsaWI WCCGGW 2 cut(s) 242, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 354, 647, 889, 1057
Bse1I ACTGG 4 cut(s) 685, 1172, 1542, 1581
Bse21I CCTNAGG 3 cut(s) 512, 530, 969
BseAI TCCGGA 1 cut(s) 1136
BseBI CCWGG 3 cut(s) 260, 272, 990
BseDI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BseGI GGATG 7 cut(s) 506, 540, 748, 1066, 1089, 1362, 1374
BseLI CCNNNNNNNGG 5 cut(s) 162, 354, 647, 889, 1057
BseMII CTCAG 4 cut(s) 31, 157, 564, 1483
BseNI ACTGG 4 cut(s) 685, 1172, 1542, 1581
BseRI GAGGAG 2 cut(s) 131, 590
BseXI GCAGC 8 cut(s) 331, 490, 665, 907, 1165, 1291, 1543, 1577
BseYI CCCAGC 1 cut(s) 883
BshFI GGCC 4 cut(s) 432, 974, 1118, 1326
BsiHKAI GWGCWC 1 cut(s) 1423
BsiSI CCGG 4 cut(s) 243, 749, 1027, 1137
BslFI GGGAC 5 cut(s) 566, 777, 936, 1211, 1488
BslI CCNNNNNNNGG 5 cut(s) 162, 354, 647, 889, 1057
BsmAI GTCTC 2 cut(s) 161, 1194
BsmBI CGTCTC 1 cut(s) 1194
BsmFI GGGAC 5 cut(s) 566, 777, 936, 1211, 1488
BsnI GGCC 4 cut(s) 432, 974, 1118, 1326
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 1051, 1423
Bsp13I TCCGGA 1 cut(s) 1136
Bsp143I GATC 4 cut(s) 276, 409, 537, 877
Bsp19I CCATGG 2 cut(s) 32, 1608
BspACI CCGC 6 cut(s) 43, 65, 355, 803, 1109, 1131
BspANI GGCC 4 cut(s) 432, 974, 1118, 1326
BspCNI CTCAG 4 cut(s) 30, 156, 565, 1482
BspEI TCCGGA 1 cut(s) 1136
BspLI GGNNCC 4 cut(s) 582, 952, 975, 996
BspMAI CTGCAG 1 cut(s) 1183
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 4 cut(s) 685, 1172, 1542, 1581
BssECI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BssMI GATC 4 cut(s) 276, 409, 537, 877
BssT1I CCWWGG 2 cut(s) 32, 1608
Bst2UI CCWGG 3 cut(s) 260, 272, 990
Bst4CI ACNGT 4 cut(s) 179, 874, 1071, 1267
Bst6I CTCTTC 1 cut(s) 1623
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 399, 1570
BstDEI CTNAG 9 cut(s) 17, 143, 230, 512, 530, 573, 767, 969, 1469
BstDSI CCRYGG 2 cut(s) 32, 1608
BstF5I GGATG 7 cut(s) 506, 540, 748, 1066, 1089, 1362, 1374
BstKTI GATC 4 cut(s) 279, 412, 540, 880
BstMAI GTCTC 2 cut(s) 161, 1194
BstMBI GATC 4 cut(s) 276, 409, 537, 877
BstMWI GCNNNNNNNGC 8 cut(s) 254, 263, 920, 1115, 1184, 1193, 1562, 1565
BstNI CCWGG 3 cut(s) 260, 272, 990
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 4 cut(s) 258, 270, 988, 1026
BstSFI CTRYAG 2 cut(s) 1179, 1398
BstV1I GCAGC 8 cut(s) 331, 490, 665, 907, 1165, 1291, 1543, 1577
BstV2I GAAGAC 1 cut(s) 1235
Bsu36I CCTNAGG 3 cut(s) 512, 530, 969
BsuI GTATCC 1 cut(s) 1255
BsuRI GGCC 4 cut(s) 432, 974, 1118, 1326
BtgI CCRYGG 2 cut(s) 32, 1608
BtsCI GGATG 7 cut(s) 506, 540, 748, 1066, 1089, 1362, 1374
BtsIMutI CAGTG 1 cut(s) 1574
Cac8I GCNNGC 2 cut(s) 399, 1570
CaiI CAGNNNCTG 1 cut(s) 1178
Cfr13I GGNCC 7 cut(s) 431, 456, 580, 950, 973, 1067, 1324
CseI GACGC 1 cut(s) 1176
Csp6I GTAC 2 cut(s) 824, 849
CviAII CATG 7 cut(s) 33, 473, 647, 739, 1016, 1516, 1609
CviQI GTAC 2 cut(s) 824, 849
DdeI CTNAG 9 cut(s) 17, 143, 230, 512, 530, 573, 767, 969, 1469
DpnI GATC 4 cut(s) 278, 411, 539, 879
DpnII GATC 4 cut(s) 276, 409, 537, 877
DriI GACNNNNNGTC 1 cut(s) 1030
Eam1104I CTCTTC 1 cut(s) 1623
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 1 cut(s) 1623
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 32, 1608
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 4 cut(s) 456, 580, 950, 1067
Eco81I CCTNAGG 3 cut(s) 512, 530, 969
EcoO109I RGGNCCY 3 cut(s) 580, 973, 1324
EcoRII CCWGG 3 cut(s) 258, 270, 988
EcoT14I CCWWGG 2 cut(s) 32, 1608
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 32, 1608
Esp3I CGTCTC 1 cut(s) 1194
FaeI CATG 7 cut(s) 36, 476, 650, 742, 1019, 1519, 1612
FalI AAGNNNNNCTT 2 cut(s) 1495, 1527
FaqI GGGAC 5 cut(s) 566, 777, 936, 1211, 1488
FatI CATG 7 cut(s) 32, 472, 646, 738, 1015, 1515, 1608
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 2 cut(s) 409, 537
FokI GGATG 7 cut(s) 493, 547, 755, 1073, 1076, 1369, 1381
FriOI GRGCYC 1 cut(s) 1051
FspBI CTAG 5 cut(s) 500, 609, 714, 917, 1616
GsaI CCCAGC 1 cut(s) 887
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 4 cut(s) 432, 974, 1118, 1326
HapII CCGG 4 cut(s) 243, 749, 1027, 1137
HgaI GACGC 1 cut(s) 1176
Hin1II CATG 7 cut(s) 36, 476, 650, 742, 1019, 1519, 1612
HinfI GANTC 8 cut(s) 4, 197, 490, 722, 771, 1031, 1334, 1541
HpaII CCGG 4 cut(s) 243, 749, 1027, 1137
HphI GGTGA 2 cut(s) 44, 286
Hpy166II GTNNAC 3 cut(s) 478, 811, 937
Hpy188III TCNNGA 7 cut(s) 459, 775, 1122, 1137, 1354, 1448, 1625
Hpy8I GTNNAC 3 cut(s) 478, 811, 937
HpyAV CCTTC 8 cut(s) 69, 80, 586, 843, 887, 1178, 1419, 1445
HpyCH4III ACNGT 4 cut(s) 179, 874, 1071, 1267
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 6 cut(s) 472, 506, 635, 671, 1181, 1502
HpyF10VI GCNNNNNNNGC 8 cut(s) 254, 263, 920, 1115, 1184, 1193, 1562, 1565
HpyF3I CTNAG 9 cut(s) 17, 143, 230, 512, 530, 573, 767, 969, 1469
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 7 cut(s) 36, 476, 650, 742, 1019, 1519, 1612
Kpn2I TCCGGA 1 cut(s) 1136
Ksp22I TGATCA 2 cut(s) 409, 537
Kzo9I GATC 4 cut(s) 276, 409, 537, 877
LmnI GCTCC 5 cut(s) 26, 144, 928, 994, 1612
Lsp1109I GCAGC 8 cut(s) 331, 490, 665, 907, 1165, 1291, 1543, 1577
LweI GCATC 3 cut(s) 244, 514, 515
MaeI CTAG 5 cut(s) 500, 609, 714, 917, 1616
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 2 cut(s) 904, 1204
MalI GATC 4 cut(s) 278, 411, 539, 879
MboI GATC 4 cut(s) 276, 409, 537, 877
MboII GAAGA 7 cut(s) 740, 1031, 1147, 1235, 1437, 1503, 1640
MfeI CAATTG 1 cut(s) 1101
MhlI GDGCHC 2 cut(s) 1051, 1423
MluCI AATT 8 cut(s) 959, 979, 1101, 1163, 1217, 1232, 1462, 1524
MlyI GAGTC 4 cut(s) 191, 731, 1040, 1535
MmeI TCCRAC 4 cut(s) 390, 538, 705, 1180
MroI TCCGGA 1 cut(s) 1136
MseI TTAA 5 cut(s) 420, 929, 956, 1043, 1235
MslI CAYNNNNRTG 1 cut(s) 1020
MspI CCGG 4 cut(s) 243, 749, 1027, 1137
MspR9I CCNGG 4 cut(s) 260, 272, 990, 1028
MunI CAATTG 1 cut(s) 1101
MvaI CCWGG 3 cut(s) 260, 272, 990
MwoI GCNNNNNNNGC 8 cut(s) 254, 263, 920, 1115, 1184, 1193, 1562, 1565
NciI CCSGG 1 cut(s) 1028
NcoI CCATGG 2 cut(s) 32, 1608
NdeII GATC 4 cut(s) 276, 409, 537, 877
NlaIII CATG 7 cut(s) 36, 476, 650, 742, 1019, 1519, 1612
NlaIV GGNNCC 4 cut(s) 582, 952, 975, 996
NmeAIII GCCGAG 1 cut(s) 578
NspI RCATGY 1 cut(s) 476
PasI CCCWGGG 1 cut(s) 989
PfeI GAWTC 3 cut(s) 490, 771, 1334
PflMI CCANNNNNTGG 1 cut(s) 647
PleI GAGTC 4 cut(s) 191, 730, 1039, 1535
PpsI GAGTC 4 cut(s) 191, 730, 1039, 1535
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 3 cut(s) 258, 270, 988
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 3 cut(s) 258, 270, 988
PspN4I GGNNCC 4 cut(s) 582, 952, 975, 996
PspPI GGNCC 7 cut(s) 431, 456, 580, 950, 973, 1067, 1324
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 1183
PstNI CAGNNNCTG 1 cut(s) 1178
RsaI GTAC 2 cut(s) 825, 850
RsaNI GTAC 2 cut(s) 824, 849
RseI CAYNNNNRTG 1 cut(s) 1020
SaqAI TTAA 5 cut(s) 420, 929, 956, 1043, 1235
Sau3AI GATC 4 cut(s) 276, 409, 537, 877
Sau96I GGNCC 7 cut(s) 431, 456, 580, 950, 973, 1067, 1324
SchI GAGTC 4 cut(s) 191, 731, 1040, 1535
ScrFI CCNGG 4 cut(s) 260, 272, 990, 1028
SduI GDGCHC 2 cut(s) 1051, 1423
SfaNI GCATC 3 cut(s) 244, 514, 515
SfcI CTRYAG 2 cut(s) 1179, 1398
SinI GGWCC 4 cut(s) 456, 580, 950, 1067
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 1 cut(s) 1379
SmoI CTYRAG 1 cut(s) 1379
Sse9I AATT 8 cut(s) 959, 979, 1101, 1163, 1217, 1232, 1462, 1524
SsiI CCGC 6 cut(s) 43, 65, 355, 803, 1109, 1131
SspI AATATT 1 cut(s) 109
SspMI CTAG 5 cut(s) 500, 609, 714, 917, 1616
StyD4I CCNGG 4 cut(s) 258, 270, 988, 1026
StyI CCWWGG 2 cut(s) 32, 1608
TaaI ACNGT 4 cut(s) 179, 874, 1071, 1267
TaiI ACGT 1 cut(s) 850
TaqI TCGA 2 cut(s) 1423, 1447
TaqII GACCGA 1 cut(s) 938
TasI AATT 8 cut(s) 959, 979, 1101, 1163, 1217, 1232, 1462, 1524
TauI GCSGC 2 cut(s) 806, 1133
TfiI GAWTC 3 cut(s) 490, 771, 1334
Tru1I TTAA 5 cut(s) 420, 929, 956, 1043, 1235
Tru9I TTAA 5 cut(s) 420, 929, 956, 1043, 1235
TscAI CASTG 1 cut(s) 1581
TseI GCWGC 8 cut(s) 344, 503, 678, 920, 1178, 1279, 1556, 1565
TspDTI ATGAA 5 cut(s) 405, 438, 705, 800, 1032
TspGWI ACGGA 1 cut(s) 1492
TspRI CASTG 1 cut(s) 1581
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 4 cut(s) 456, 580, 950, 1067
XapI RAATTY 3 cut(s) 959, 979, 1462
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XspI CTAG 5 cut(s) 500, 609, 714, 917, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.