Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008591

Physical Location & Seq

Genomic Coordinates Forward (+)

55494029 .. 55498372

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGACTTTATACCTCAGCTCCCCACCATGGCTCTCTCGTCCATCTCCACCCCTCCCCTCTTATACCAACACCAACGCCTTGTTCTTCAGACTAAGCTTGACTTCTGTCAACTTCCCGAAGCTCATTACAACAAAGGCGTCGTCTTTGGGCGAGAGTGAAAGTGCTAATGGGATTGCAGAGGACTCTGTTTCTGAGCTTTTGGACGAGGACTTGTTAGGTGTTGATGACAATGGCCGGAGGTGGAAGTGGTCCAGACCAGATGTGAGTGTCTACACATCATTAATTCTGGGTCTGGCTGCATCATTGAGAGTTTCTGATGCCCTTAAGATGATCAACAGTATATGCCGAGTCGGAGTGTCTCTAGCTGAGGAGGTTCCATTTGGAAAAGTTGTGAGGTGTCCAAGCTGTATGATAGCTGTTGCTGTTGCACAACCGCAACATGGTATTCAGATAGCATCCTGTGCAAAGTGCTCCTACCAATATGAACTTGTTTCTGGCAACATAGACAGTATTGCGTCAGAAGAAATCGGGTTGGATTACTTATCTGCTTTTGTTTCCATGGATATTCCAGCTTGGAAAAGGGCACTAAGATTCCTGCAGATATTGAAGCAAAAGATTCCTGCTGCTGTTCACTCCATTGTGGTACAAACCCCTTCAGGTATGGCTCGTACACATAGGTTTGCCACTGAAACAGTTGATCTCCCAGCACAGGAAGGAGAAAGGGTAACCATTGCTCTTGCAGCTCCATTAAGTGTATATAGAGAGGTGGGTCCCTTAAAATTTAGTCCAAAGGCCCCCAATTTTTACCCTAGTGAGCCTATCTGCTTGACAAACCATGAGGATGGCCGCGAGTCACAACTATTAAGAGCCCCTACAAAAGATGGTAGCACGTTGCTTACTAGCCCCTCCATACTTTTTCCAATTGTTGCTGTTTTGGCCACCGGCAATGCTGCCTCTGGATTTATAGACCCCAGCCTCCCTCAATTCCTTTCGGTCGCTGCAGTAACATCTCTTGCTGTTGGAGTTACTCTCAAAACGTTGGTTTTGCCCCAATTGAATCGTCTTCCTCAGAGAGTAGTGGATACAGTTGCAATCAAACAGCAGCTATTATCTCAATATGACAAGCTCCAATCTCGTATAAAGGGCCTCAAAGAAGCTGCTGAAAAAGAGGTCTGGATGTTGGCTCGGATGTGCCAGCTTGAGAACAAAATTTATGCTGTTGGAGAGCCTTCTTACCGTGCTCGGAGAAGTAAAGTCAAAAGGGTTCGAGAAGGCTTGGAAAATTCTCTCAGGGGAAGAATTGAGCTGATTGACAGCTATGCGAGGATTTCTTCGATGATCGAAATTGAGGTAGAACTGGACTCTGATGTTCTTGCTGCTGCACAAGCAAGCAATGTGGAAAATATTGCAGAACAAATACAACAAACAATGGAACTAGAAAATCTTGAAGAGAGATGGAGAATACAAGCTGAAGCAAATGATGAGGCAGAAAGACTTCTTAGTTCTGAACAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

505

Amino Acids

55.48

Weight (kDa)

5.58

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64430 AT1G64430 AT1G64430
fragaria_vesca	FvH4_5g04720 FvH4_5g04720
malus_domestica	MD06G1108400.v1.1
prunus_persica	Prupe.5G121000_v2.0.a1 Prupe.5G121000_v2.0.a1
pyrus_communis	pycom06g10180
rosa_chinensis	RchiOBHm_Chr7g0194681
rosa_laevigata	RLG00000004182
rosa_multiflora	Rmu_sc0018264.1_g000003 Rmu_sc0023803.1_g000001 Rmu_sc0034112.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261160
rosa_rugosa	Rorug07G0017200 Rorug07G0017300 Rorug07G0017300
rosa_samantha	Rh7AG144700 Rh7BG144700 Rh7CG148500 Rh7DG145900
rosa_wichuraiana	Rw7G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	849
AciI	CCGC	2 cut(s)	434, 847
AclI	AACGTT	1 cut(s)	1037
AcoI	YGGCCR	3 cut(s)	232, 844, 936
AcsI	RAATTY	3 cut(s)	779, 1209, 1282
AcuI	CTGAAG	3 cut(s)	70, 639, 1491
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	2 cut(s)	645, 670
AfiI	CCNNNNNNNGG	3 cut(s)	27, 440, 709
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	607, 1057, 1448
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
Alw21I	GWGCWC	2 cut(s)	473, 1243
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	5 cut(s)	232, 792, 844, 936, 1144
ApeKI	GCWGC	9 cut(s)	296, 623, 740, 950, 998, 1102, 1157, 1376, 1379
ApoI	RAATTY	3 cut(s)	779, 1209, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AseI	ATTAAT	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	1494
AspS9I	GGNCC	4 cut(s)	249, 770, 793, 1144
AvaII	GGWCC	2 cut(s)	249, 770
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	938
BanII	GRGCYC	1 cut(s)	871
BbsI	GAAGAC	1 cut(s)	1055
Bbv12I	GWGCWC	2 cut(s)	473, 1243
BbvCI	CCTCAGC	2 cut(s)	14, 366
BbvI	GCAGC	9 cut(s)	283, 610, 752, 937, 985, 1114, 1144, 1363, 1366
BccI	CCATC	4 cut(s)	49, 836, 875, 1449
BciVI	GTATCC	1 cut(s)	1075
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	4 cut(s)	362, 810, 900, 1436
BfmI	CTRYAG	2 cut(s)	596, 999
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	1075
Bme18I	GGWCC	2 cut(s)	249, 770
BmgT120I	GGNCC	4 cut(s)	249, 770, 793, 1144
BmiI	GGNNCC	4 cut(s)	375, 771, 772, 795
BmsI	GCATC	3 cut(s)	307, 308, 464
BoxI	GACNNNNGTC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	1055
BplI	GAGNNNNNCTC	2 cut(s)	1014, 1046
Bpu10I	CCTNAGC	2 cut(s)	14, 366
BpuEI	CTTGAG	1 cut(s)	1220
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	26, 558
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 708, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 440, 709
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	1 cut(s)	1362
Bse3DI	GCAATG	3 cut(s)	729, 952, 1399
BseDI	CCNNGG	2 cut(s)	26, 558
BseGI	GGATG	4 cut(s)	455, 847, 1182, 1194
BseLI	CCNNNNNNNGG	3 cut(s)	27, 440, 709
BseMI	GCAATG	3 cut(s)	729, 952, 1399
BseMII	CTCAG	5 cut(s)	28, 183, 357, 1082, 1303
BseNI	ACTGG	1 cut(s)	1362
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	9 cut(s)	283, 610, 752, 937, 985, 1114, 1144, 1363, 1366
BseYI	CCCAGC	2 cut(s)	703, 971
BsgI	GTGCAG	1 cut(s)	1365
Bsh1236I	CGCG	1 cut(s)	849
Bsh1285I	CGRYCG	1 cut(s)	996
BshFI	GGCC	5 cut(s)	234, 794, 846, 938, 1146
BsiEI	CGRYCG	1 cut(s)	996
BsiHKAI	GWGCWC	2 cut(s)	473, 1243
BsiSI	CCGG	2 cut(s)	235, 942
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	27, 440, 709
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	5 cut(s)	234, 794, 846, 938, 1146
Bsp1286I	GDGCHC	4 cut(s)	473, 586, 871, 1243
Bsp143I	GATC	3 cut(s)	330, 697, 1338
Bsp19I	CCATGG	2 cut(s)	26, 558
BspACI	CCGC	2 cut(s)	434, 847
BspANI	GGCC	5 cut(s)	234, 794, 846, 938, 1146
BspCNI	CTCAG	5 cut(s)	27, 184, 358, 1081, 1302
BspFNI	CGCG	1 cut(s)	849
BspLI	GGNNCC	4 cut(s)	375, 771, 772, 795
BspMAI	CTGCAG	2 cut(s)	600, 1003
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	3 cut(s)	729, 952, 1399
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	1362
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	2 cut(s)	26, 558
BssMI	GATC	3 cut(s)	330, 697, 1338
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	26, 558
Bst4CI	ACNGT	5 cut(s)	338, 509, 694, 1087, 1238
Bst6I	CTCTTC	1 cut(s)	1443
BstACI	GRCGYC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	1196, 1390
BstDEI	CTNAG	8 cut(s)	14, 92, 192, 366, 587, 1068, 1289, 1499
BstDSI	CCRYGG	2 cut(s)	26, 558
BstEII	GGTNACC	1 cut(s)	724
BstF5I	GGATG	4 cut(s)	455, 847, 1182, 1194
BstFNI	CGCG	1 cut(s)	849
BstKTI	GATC	3 cut(s)	333, 700, 1341
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	330, 697, 1338
BstMCI	CGRYCG	1 cut(s)	996
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 740, 935, 1385
BstPAI	GACNNNNGTC	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	724
BstSFI	CTRYAG	2 cut(s)	596, 999
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	9 cut(s)	283, 610, 752, 937, 985, 1114, 1144, 1363, 1366
BstV2I	GAAGAC	1 cut(s)	1055
BstXI	CCANNNNNNTGG	1 cut(s)	842
BsuI	GTATCC	1 cut(s)	1075
BsuRI	GGCC	5 cut(s)	234, 794, 846, 938, 1146
BtgI	CCRYGG	2 cut(s)	26, 558
BtsCI	GGATG	4 cut(s)	455, 847, 1182, 1194
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	2 cut(s)	1196, 1390
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	4 cut(s)	249, 770, 793, 1144
CseI	GACGC	2 cut(s)	126, 504
Csp6I	GTAC	2 cut(s)	644, 669
CspCI	CAANNNNNGTGG	2 cut(s)	1377, 1412
CviAII	CATG	4 cut(s)	27, 440, 559, 836
CviQI	GTAC	2 cut(s)	644, 669
DdeI	CTNAG	8 cut(s)	14, 92, 192, 366, 587, 1068, 1289, 1499
DpnI	GATC	3 cut(s)	332, 699, 1340
DpnII	GATC	3 cut(s)	330, 697, 1338
EaeI	YGGCCR	3 cut(s)	232, 844, 936
Eam1104I	CTCTTC	1 cut(s)	1443
EarI	CTCTTC	1 cut(s)	1443
Eco130I	CCWWGG	2 cut(s)	26, 558
Eco24I	GRGCYC	1 cut(s)	871
Eco47I	GGWCC	2 cut(s)	249, 770
Eco57I	CTGAAG	3 cut(s)	70, 639, 1491
Eco91I	GGTNACC	1 cut(s)	724
EcoO109I	RGGNCCY	3 cut(s)	770, 793, 1144
EcoO65I	GGTNACC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	26, 558
EcoT38I	GRGCYC	1 cut(s)	871
ErhI	CCWWGG	2 cut(s)	26, 558
FaeI	CATG	4 cut(s)	30, 443, 562, 839
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	4 cut(s)	26, 439, 558, 835
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	270
FokI	GGATG	4 cut(s)	442, 854, 1189, 1201
FriOI	GRGCYC	1 cut(s)	871
FspBI	CTAG	4 cut(s)	362, 810, 900, 1436
GsaI	CCCAGC	2 cut(s)	707, 975
HaeIII	GGCC	5 cut(s)	234, 794, 846, 938, 1146
HapII	CCGG	2 cut(s)	235, 942
HgaI	GACGC	2 cut(s)	126, 504
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	30, 443, 562, 839
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	7 cut(s)	182, 348, 591, 616, 851, 1057, 1361
HpaII	CCGG	2 cut(s)	235, 942
Hpy166II	GTNNAC	4 cut(s)	109, 271, 631, 671
Hpy188III	TCNNGA	6 cut(s)	115, 252, 957, 1174, 1268, 1445
Hpy8I	GTNNAC	4 cut(s)	109, 271, 631, 671
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	663, 707, 1239, 1265
HpyCH4III	ACNGT	5 cut(s)	338, 509, 694, 1087, 1238
HpyCH4IV	ACGT	2 cut(s)	890, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 740, 935, 1385
HpyF3I	CTNAG	8 cut(s)	14, 92, 192, 366, 587, 1068, 1289, 1499
HpySE526I	ACGT	2 cut(s)	890, 1037
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	30, 443, 562, 839
KflI	GGGWCCC	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	330, 697, 1338
LmnI	GCTCC	4 cut(s)	23, 476, 748, 1131
Lsp1109I	GCAGC	9 cut(s)	283, 610, 752, 937, 985, 1114, 1144, 1363, 1366
LweI	GCATC	3 cut(s)	307, 308, 464
MaeI	CTAG	4 cut(s)	362, 810, 900, 1436
MaeII	ACGT	2 cut(s)	890, 1037
MaeIII	GTNAC	4 cut(s)	724, 852, 1003, 1024
MalI	GATC	3 cut(s)	332, 699, 1340
MboI	GATC	3 cut(s)	330, 697, 1338
MboII	GAAGA	6 cut(s)	76, 533, 1055, 1308, 1323, 1460
MfeI	CAATTG	2 cut(s)	921, 1052
MhlI	GDGCHC	4 cut(s)	473, 586, 871, 1243
MlsI	TGGCCA	1 cut(s)	938
MluNI	TGGCCA	1 cut(s)	938
MlyI	GAGTC	4 cut(s)	176, 357, 860, 1355
MmeI	TCCRAC	4 cut(s)	331, 513, 1000, 1201
Mox20I	TGGCCA	1 cut(s)	938
MroXI	GAANNNNTTC	1 cut(s)	1494
MscI	TGGCCA	1 cut(s)	938
MseI	TTAA	5 cut(s)	281, 324, 749, 776, 863
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	938
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	2 cut(s)	235, 942
MunI	CAATTG	2 cut(s)	921, 1052
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	4 cut(s)	461, 740, 935, 1385
NcoI	CCATGG	2 cut(s)	26, 558
NdeII	GATC	3 cut(s)	330, 697, 1338
NlaIII	CATG	4 cut(s)	30, 443, 562, 839
NlaIV	GGNNCC	4 cut(s)	375, 771, 772, 795
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	1494
PfeI	GAWTC	3 cut(s)	591, 616, 1057
PleI	GAGTC	4 cut(s)	176, 356, 859, 1355
PpsI	GAGTC	4 cut(s)	176, 356, 859, 1355
PpuMI	RGGWCCY	1 cut(s)	770
PshAI	GACNNNNGTC	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	1037
Psp5II	RGGWCCY	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	724
PspFI	CCCAGC	2 cut(s)	703, 971
PspN4I	GGNNCC	4 cut(s)	375, 771, 772, 795
PspPI	GGNCC	4 cut(s)	249, 770, 793, 1144
PspPPI	RGGWCCY	1 cut(s)	770
PstI	CTGCAG	2 cut(s)	600, 1003
RsaI	GTAC	2 cut(s)	645, 670
RsaNI	GTAC	2 cut(s)	644, 669
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	5 cut(s)	281, 324, 749, 776, 863
Sau3AI	GATC	3 cut(s)	330, 697, 1338
Sau96I	GGNCC	4 cut(s)	249, 770, 793, 1144
SchI	GAGTC	4 cut(s)	176, 357, 860, 1355
SduI	GDGCHC	4 cut(s)	473, 586, 871, 1243
SfaNI	GCATC	3 cut(s)	307, 308, 464
SfcI	CTRYAG	2 cut(s)	596, 999
SinI	GGWCC	2 cut(s)	249, 770
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	2 cut(s)	323, 1199
SmoI	CTYRAG	2 cut(s)	323, 1199
SsiI	CCGC	2 cut(s)	434, 847
SspI	AATATT	1 cut(s)	1405
SspMI	CTAG	4 cut(s)	362, 810, 900, 1436
StyI	CCWWGG	2 cut(s)	26, 558
TaaI	ACNGT	5 cut(s)	338, 509, 694, 1087, 1238
TaiI	ACGT	2 cut(s)	893, 1040
TaqI	TCGA	3 cut(s)	1267, 1334, 1341
TaqII	GACCGA	1 cut(s)	982
TauI	GCSGC	1 cut(s)	849
TfiI	GAWTC	3 cut(s)	591, 616, 1057
Tru1I	TTAA	5 cut(s)	281, 324, 749, 776, 863
Tru9I	TTAA	5 cut(s)	281, 324, 749, 776, 863
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	852
TseI	GCWGC	9 cut(s)	296, 623, 740, 950, 998, 1102, 1157, 1376, 1379
Tsp45I	GTSAC	1 cut(s)	852
TspDTI	ATGAA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	249, 770
VspI	ATTAAT	1 cut(s)	281
XapI	RAATTY	3 cut(s)	779, 1209, 1282
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	1494
XspI	CTAG	4 cut(s)	362, 810, 900, 1436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.