Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023803.1

Orthogroup ID

OG0008591

Physical Location & Seq

Genomic Coordinates Forward (+)

86 .. 3414

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggctcgtacacataggtttgccactgaaacagttgatctcccagcacaggaaggagaaagggtaaccattgctcttgcagctccattaagtgtatatagagaggtgggtcccttaaaatttagtccaaaggcccctaatttttaccctagtgagcctatctgcttgacaaaccatgaggatggtcgcgagtcacaactattaagagcccctacaaaagatggtagcacgttgcttactagcccctccatgctttttccaattgttgctgttttggccaccggcaatgctgcctctggagttatagaccccagcctccctcaattcctttcagtcgctgcagtaacatctcttgctgttggagttactctcaaaacgttggttttgccccaattgaatcgtcttcctcagagagtagtggatacagttgcgatcaaacagcagctattatctcaatatgacaagctccaatctcgtataaagggcctcaaagaagctgctgaaaaagaggtctggatgttggctcggatgtgccagcttgagaacaaaatttatgctgtaggagagccttcttaccgtgctcggagaagtaaagtcaaaagggttcgagaaggcttggaaaattctctcaggggaagaattgagctgattgatagctatgcgaggatttcttcgatgatcgaaattgaggtagaactggactctgatgttcttgctgctgaacaagcaagcaatgtggaaaatattgcagaacaaatacaacaaacaatggaactagaaaatcttgaagagagatggagaatacaagttgaagcaaatgatgaggcagaaagacttcttagttctgaacagggtttgcaccttggcctgagcctgagcctgagccctcgaatattgaagggcttgcactttggccttcggatattaaaggttggcactctaggatatagggcattgaatatcgacagactggacagaagtgactcgtctccagccaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.89

Weight (kDa)

6.19

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64430 AT1G64430 AT1G64430
fragaria_vesca	FvH4_5g04720 FvH4_5g04720
malus_domestica	MD06G1108400.v1.1
prunus_persica	Prupe.5G121000_v2.0.a1 Prupe.5G121000_v2.0.a1
pyrus_communis	pycom06g10180
rosa_chinensis	RchiOBHm_Chr7g0194681
rosa_laevigata	RLG00000004182
rosa_multiflora	Rmu_sc0018264.1_g000003 Rmu_sc0023803.1_g000001 Rmu_sc0034112.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261160
rosa_rugosa	Rorug07G0017200 Rorug07G0017300 Rorug07G0017300
rosa_samantha	Rh7AG144700 Rh7BG144700 Rh7CG148500 Rh7DG145900
rosa_wichuraiana	Rw7G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AclI	AACGTT	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	3 cut(s)	119, 549, 622
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	397, 788, 812, 898, 958
AluBI	AGCT	7 cut(s)	83, 445, 466, 497, 538, 646, 657
AluI	AGCT	7 cut(s)	83, 445, 466, 497, 538, 646, 657
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	1 cut(s)	993
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	5 cut(s)	132, 276, 484, 865, 913
ApeKI	GCWGC	6 cut(s)	80, 290, 338, 442, 497, 716
ApoI	RAATTY	3 cut(s)	119, 549, 622
Asp700I	GAANNNNTTC	1 cut(s)	834
AspS9I	GGNCC	3 cut(s)	110, 133, 484
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	211, 887
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	6 cut(s)	92, 277, 325, 454, 484, 703
BccI	CCATC	3 cut(s)	176, 215, 789
BciVI	GTATCC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	993
BfaI	CTAG	4 cut(s)	150, 240, 776, 941
BfmI	CTRYAG	2 cut(s)	339, 558
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	6 cut(s)	81, 291, 339, 443, 498, 717
BlsI	GCNGC	6 cut(s)	82, 292, 340, 444, 499, 718
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	110, 133, 484
BmiI	GGNNCC	3 cut(s)	111, 112, 135
BpiI	GAAGAC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	2 cut(s)	318, 975
Bpu10I	CCTNAGC	3 cut(s)	869, 875, 881
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	862
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	702, 975
Bse3DI	GCAATG	3 cut(s)	69, 292, 739
BseDI	CCNNGG	1 cut(s)	862
BseGI	GGATG	3 cut(s)	187, 522, 534
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	3 cut(s)	69, 292, 739
BseMII	CTCAG	5 cut(s)	422, 643, 860, 866, 872
BseNI	ACTGG	2 cut(s)	702, 975
BseXI	GCAGC	6 cut(s)	92, 277, 325, 454, 484, 703
BseYI	CCCAGC	2 cut(s)	43, 311
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	5 cut(s)	134, 278, 486, 867, 915
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	993
BsmBI	CGTCTC	1 cut(s)	993
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	5 cut(s)	134, 278, 486, 867, 915
Bsp1286I	GDGCHC	3 cut(s)	211, 583, 887
Bsp143I	GATC	3 cut(s)	37, 432, 678
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	5 cut(s)	134, 278, 486, 867, 915
BspCNI	CTCAG	5 cut(s)	421, 642, 861, 867, 873
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	111, 112, 135
BspMAI	CTGCAG	1 cut(s)	343
BsrDI	GCAATG	3 cut(s)	69, 292, 739
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	702, 975
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	862
BssMI	GATC	3 cut(s)	37, 432, 678
BssT1I	CCWWGG	1 cut(s)	862
Bst4CI	ACNGT	3 cut(s)	34, 427, 578
Bst6I	CTCTTC	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	536, 730, 905
BstDEI	CTNAG	6 cut(s)	408, 629, 839, 869, 875, 881
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	187, 522, 534
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	3 cut(s)	40, 435, 681
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	3 cut(s)	37, 432, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 275, 725
BstPI	GGTNACC	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	339, 558
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	6 cut(s)	92, 277, 325, 454, 484, 703
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	5 cut(s)	134, 278, 486, 867, 915
BtsCI	GGATG	3 cut(s)	187, 522, 534
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	536, 730, 905
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	110, 133, 484
Csp6I	GTAC	1 cut(s)	9
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	2 cut(s)	176, 250
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	6 cut(s)	408, 629, 839, 869, 875, 881
DpnI	GATC	3 cut(s)	39, 434, 680
DpnII	GATC	3 cut(s)	37, 432, 678
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	862
Eco24I	GRGCYC	2 cut(s)	211, 887
Eco47I	GGWCC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	3 cut(s)	110, 133, 484
EcoO65I	GGTNACC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	862
EcoT38I	GRGCYC	2 cut(s)	211, 887
ErhI	CCWWGG	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	993
FaeI	CATG	2 cut(s)	179, 253
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	175, 249
Fnu4HI	GCNGC	6 cut(s)	81, 291, 339, 443, 498, 717
FokI	GGATG	3 cut(s)	194, 529, 541
FriOI	GRGCYC	2 cut(s)	211, 887
Fsp4HI	GCNGC	6 cut(s)	81, 291, 339, 443, 498, 717
FspBI	CTAG	4 cut(s)	150, 240, 776, 941
GluI	GCNGC	6 cut(s)	81, 291, 339, 443, 498, 717
GsaI	CCCAGC	2 cut(s)	47, 315
GsuI	CTGGAG	2 cut(s)	318, 975
HaeIII	GGCC	5 cut(s)	134, 278, 486, 867, 915
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	179, 253
HinfI	GANTC	4 cut(s)	191, 397, 701, 983
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	6 cut(s)	411, 528, 585, 706, 847, 921
Hpy188III	TCNNGA	5 cut(s)	188, 297, 514, 608, 785
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	47, 579, 605, 892, 926
HpyCH4III	ACNGT	3 cut(s)	34, 427, 578
HpyCH4IV	ACGT	2 cut(s)	230, 377
HpyCH4V	TGCA	5 cut(s)	80, 341, 749, 859, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 275, 725
HpyF3I	CTNAG	6 cut(s)	408, 629, 839, 869, 875, 881
HpySE526I	ACGT	2 cut(s)	230, 377
Hsp92II	CATG	2 cut(s)	179, 253
KflI	GGGWCCC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	37, 432, 678
LmnI	GCTCC	2 cut(s)	88, 471
Lsp1109I	GCAGC	6 cut(s)	92, 277, 325, 454, 484, 703
MaeI	CTAG	4 cut(s)	150, 240, 776, 941
MaeII	ACGT	2 cut(s)	230, 377
MaeIII	GTNAC	5 cut(s)	64, 192, 343, 364, 980
MalI	GATC	3 cut(s)	39, 434, 680
MboI	GATC	3 cut(s)	37, 432, 678
MboII	GAAGA	4 cut(s)	395, 648, 663, 800
MfeI	CAATTG	2 cut(s)	261, 392
MhlI	GDGCHC	3 cut(s)	211, 583, 887
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	9 cut(s)	119, 139, 261, 323, 392, 549, 622, 639, 684
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	3 cut(s)	200, 695, 977
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	834
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	4 cut(s)	89, 116, 203, 926
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	1 cut(s)	282
MunI	CAATTG	2 cut(s)	261, 392
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	80, 275, 725
NdeII	GATC	3 cut(s)	37, 432, 678
NlaIII	CATG	2 cut(s)	179, 253
NlaIV	GGNNCC	3 cut(s)	111, 112, 135
NmuCI	GTSAC	2 cut(s)	192, 980
NruI	TCGCGA	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	6 cut(s)	82, 292, 340, 444, 499, 718
PleI	GAGTC	3 cut(s)	199, 695, 977
PpsI	GAGTC	3 cut(s)	199, 695, 977
PpuMI	RGGWCCY	1 cut(s)	110
Psp1406I	AACGTT	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	64
PspFI	CCCAGC	2 cut(s)	43, 311
PspN4I	GGNNCC	3 cut(s)	111, 112, 135
PspPI	GGNCC	3 cut(s)	110, 133, 484
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	89, 116, 203, 926
SatI	GCNGC	6 cut(s)	81, 291, 339, 443, 498, 717
Sau3AI	GATC	3 cut(s)	37, 432, 678
Sau96I	GGNCC	3 cut(s)	110, 133, 484
SchI	GAGTC	3 cut(s)	200, 695, 977
SduI	GDGCHC	3 cut(s)	211, 583, 887
SfcI	CTRYAG	2 cut(s)	339, 558
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	9 cut(s)	119, 139, 261, 323, 392, 549, 622, 639, 684
SspI	AATATT	2 cut(s)	745, 894
SspMI	CTAG	4 cut(s)	150, 240, 776, 941
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	3 cut(s)	34, 427, 578
TaiI	ACGT	2 cut(s)	233, 380
TaqI	TCGA	5 cut(s)	607, 674, 681, 889, 963
TasI	AATT	9 cut(s)	119, 139, 261, 323, 392, 549, 622, 639, 684
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	4 cut(s)	89, 116, 203, 926
Tru9I	TTAA	4 cut(s)	89, 116, 203, 926
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	192, 980
TseI	GCWGC	6 cut(s)	80, 290, 338, 442, 497, 716
Tsp45I	GTSAC	2 cut(s)	192, 980
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	3 cut(s)	119, 549, 622
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	4 cut(s)	150, 240, 776, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.