MD06G1108400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
24794435 .. 24798948
4514 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1108400.v1.1.491

Sequence Viewer

Length: 1713 bp
ATGACTCTAATAAACCTCAGCTCCCTCTCCCCATGGCTCTCCCGCCTCTCTCACCACCCTTCTCCGCCCCTTCCCATCTTTCCCACCACCACTTTTTTGTTCAGAAATATTCAATCCACTTCCATCAACTTCTCAAAGCTCCTCAGAGTAAAAGCCTCATTGGGGGAGACCCAAAACGGCAGTGGGTTGGCAGAGGACTCTGTTTCTGAGCTGTTGGACGCTGAGTTGCTTGGAAGAGTATCGGGTACTAAAGATGCCCAGGAAGCACTCCAGCTGATCGCTGAAATGCCTGACAGAAATGGTGGTGTTGTGAGTGTATCTGATTGCTGTGCTATTATATCGGCTGCCCTTAAGCGGAACAACCGCGACTTGGCTCTCTCTGTTTTCTATGAAATGCGTGCGAGTTTTGATCAAGGTGTTAATGAAGATGGCCCTCTTGTTGAGAGGTGGAAATGGTCCAGACCAGATGTGCGTGTTTACACATCATTGATTCTGGGTCTAGCTGCGTCACTTAGGGTTTCTGATGCCATGAGGATGATCAACAATGTTTGCCGAGTTGGAGTATCTCCTGCTGAGGAGGTTCCATTTGGGAAGGTTGTTAGGTGTCCTAGCTGTATGATAGCTGTTGCTGTTGCACAACCACAGCATGGTATTCAGGTAGTGTCGTGTGCAAAGTGCTGCTACCAATACGAACTTATTTCTGGCAACATAGCTAGCATTGAGTCGGAAGAAATCAGCATGGATGTTCCAGCTTGGAAAAGGGGACTAAGATTCCTGAACATAATGAAGCAAAGTATTCCTGCGGCTGTTCACTCCATTGTGGTACAAACCCCATCTGGTATAGCTCGTACAAACAGGTTTGCTACTGAAACAGTTGATCTCCCAGCACAGGAAGGGGAAAGGGTAACAATTGCTCTAGCAGCTCCATCAAGTGTTTACAGAGAGGTCGGTCCCTTAAAATTTAGTCCTAAGGCACCAAATTTTTACCCTGGGGAGCCTATCTGCTTGACAAACCATGAAGATGGCCGGGAGTCAAAACTATTAAGAGCCCCCTTAAAGGATGGAGGATCGTTGCTAACTAACCCCTCCATACTTTTTCCAATTGTTGCTGTTTTGGCCTCTGGAAATGCCGCCTCTGGAGTTATAGACCCCACCTTCCCCCAATTCCTTCCAGTTGCTGCAGTAGCATCTCTTGCTGTTGGAGTTACTCTGAACACATTGGTTGTCCCCCAATTAAATCGTCTTCCTCGGAGAATAGTGGATACAGTTGCCATCAAGCAGCAACTTTTATCGCAATATGACACACTCCAATCTCGTATAAGGGGCCTAAAAGAATCTGCTGAAAAAGAGGTCTGGATGTTGGCTCGGATGTGCCAACTTGAGAACAAAATTGTTGCTGTAGGAGAGCCTTCTTATCGTGCTCGAAGAAGTAAAGTCAAAAGGGTCCGAGAAGGCTTGGAAAATTCTCTCAAGGGACGAATTGAACTTATTGACAGCTATGCAAGGATTTCATCAATGATCGAAATTGAGGTAGAACTGGACTCCGATGTTCTTGCTGCTGAAGCAGCAAGCAATGCGGAAAATATTGCTGAACAGATACAGCAAACCATGGAGCTAGAAAACCTTGAAGAGAGATGGAGAATACAAGTTGAAGCAAATGATGAGGCAGAAAGACTTCTTAGTTCCCAACCGATGCCAACAGAACAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

571

Amino Acids

62.45

Weight (kDa)

5.7

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 973
AccB7I CCANNNNNTGG 1 cut(s) 647
AccII CGCG 1 cut(s) 366
AciI CCGC 7 cut(s) 43, 65, 355, 364, 803, 1131, 1577
AclWI GGATC 1 cut(s) 1075
AcoI YGGCCR 1 cut(s) 1024
AcsI RAATTY 3 cut(s) 959, 979, 1462
AcuI CTGAAG 1 cut(s) 1581
AfaI GTAC 3 cut(s) 247, 825, 850
AfiI CCNNNNNNNGG 6 cut(s) 162, 354, 370, 647, 889, 1057
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 4 cut(s) 113, 1484, 1628, 1652
AjnI CCWGG 2 cut(s) 258, 988
Alw21I GWGCWC 1 cut(s) 1423
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 1075
AlwNI CAGNNNCTG 1 cut(s) 1178
AoxI GGCC 4 cut(s) 430, 1024, 1116, 1324
ApeKI GCWGC 8 cut(s) 344, 503, 678, 920, 1178, 1279, 1556, 1565
ApoI RAATTY 3 cut(s) 959, 979, 1462
Asp700I GAANNNNTTC 1 cut(s) 1674
AspS9I GGNCC 5 cut(s) 431, 456, 950, 1324, 1444
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 713
AvaII GGWCC 3 cut(s) 456, 950, 1444
AxyI CCTNAGG 1 cut(s) 969
BanI GGYRCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 1235
Bbv12I GWGCWC 1 cut(s) 1423
BbvCI CCTCAGC 2 cut(s) 17, 573
BbvI GCAGC 8 cut(s) 331, 490, 665, 932, 1165, 1291, 1543, 1577
BccI CCATC 9 cut(s) 83, 131, 422, 841, 934, 1016, 1055, 1280, 1629
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 1535, 1569
BciT130I CCWGG 2 cut(s) 260, 990
BciVI GTATCC 1 cut(s) 1255
BclI TGATCA 2 cut(s) 409, 537
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 5 cut(s) 500, 609, 714, 917, 1616
BfmI CTRYAG 2 cut(s) 1179, 1398
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 1 cut(s) 1255
Bme1390I CCNGG 3 cut(s) 260, 990, 1028
Bme18I GGWCC 3 cut(s) 456, 950, 1444
BmgT120I GGNCC 5 cut(s) 431, 456, 950, 1324, 1444
BmiI GGNNCC 6 cut(s) 582, 952, 975, 996, 1325, 1445
BmrFI CCNGG 3 cut(s) 260, 990, 1028
BmsI GCATC 4 cut(s) 244, 514, 1196, 1683
BmtI GCTAGC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 1235
BpmI CTGGAG 2 cut(s) 254, 1158
Bpu10I CCTNAGC 2 cut(s) 17, 573
BpuEI CTTGAG 2 cut(s) 1400, 1454
BpuMI CCSGG 1 cut(s) 1028
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 6 cut(s) 162, 354, 370, 647, 889, 1057
Bse1I ACTGG 2 cut(s) 1172, 1542
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 1 cut(s) 1579
BseBI CCWGG 2 cut(s) 260, 990
BseDI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BseGI GGATG 5 cut(s) 540, 748, 1066, 1362, 1374
BseLI CCNNNNNNNGG 6 cut(s) 162, 354, 370, 647, 889, 1057
BseMI GCAATG 1 cut(s) 1579
BseMII CTCAG 5 cut(s) 31, 157, 198, 213, 564
BseNI ACTGG 2 cut(s) 1172, 1542
BseRI GAGGAG 2 cut(s) 131, 590
BseXI GCAGC 8 cut(s) 331, 490, 665, 932, 1165, 1291, 1543, 1577
BseYI CCCAGC 1 cut(s) 883
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 4 cut(s) 432, 1026, 1118, 1326
BshNI GGYRCC 1 cut(s) 973
BsiHKAI GWGCWC 1 cut(s) 1423
BsiSI CCGG 1 cut(s) 1027
BslFI GGGAC 4 cut(s) 777, 936, 1211, 1488
BslI CCNNNNNNNGG 6 cut(s) 162, 354, 370, 647, 889, 1057
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 4 cut(s) 777, 936, 1211, 1488
BsnI GGCC 4 cut(s) 432, 1026, 1118, 1326
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 1051, 1423
Bsp143I GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
Bsp19I CCATGG 2 cut(s) 32, 1608
BspACI CCGC 7 cut(s) 43, 65, 355, 364, 803, 1131, 1577
BspANI GGCC 4 cut(s) 432, 1026, 1118, 1326
BspCNI CTCAG 5 cut(s) 30, 156, 199, 214, 565
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 6 cut(s) 582, 952, 975, 996, 1325, 1445
BspMAI CTGCAG 1 cut(s) 1183
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 1075
BspT107I GGYRCC 1 cut(s) 973
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 1579
BsrI ACTGG 2 cut(s) 1172, 1542
BssECI CCNNGG 6 cut(s) 32, 258, 988, 989, 1247, 1608
BssMI GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
BssT1I CCWWGG 2 cut(s) 32, 1608
Bst2UI CCWGG 2 cut(s) 260, 990
Bst4CI ACNGT 2 cut(s) 874, 1267
Bst6I CTCTTC 2 cut(s) 229, 1623
BstAFI CTTAAG 1 cut(s) 350
BstAPI GCANNNNNTGC 2 cut(s) 1193, 1574
BstC8I GCNNGC 3 cut(s) 399, 715, 1570
BstDEI CTNAG 9 cut(s) 17, 143, 207, 222, 512, 573, 767, 969, 1679
BstDSI CCRYGG 2 cut(s) 32, 1608
BstF5I GGATG 5 cut(s) 540, 748, 1066, 1362, 1374
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 6 cut(s) 279, 412, 540, 880, 1070, 1521
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
BstMWI GCNNNNNNNGC 8 cut(s) 263, 920, 1115, 1184, 1193, 1562, 1565, 1574
BstNI CCWGG 2 cut(s) 260, 990
BstSCI CCNGG 3 cut(s) 258, 988, 1026
BstSFI CTRYAG 2 cut(s) 1179, 1398
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 8 cut(s) 331, 490, 665, 932, 1165, 1291, 1543, 1577
BstV2I GAAGAC 1 cut(s) 1235
BstXI CCANNNNNNTGG 1 cut(s) 1022
Bsu36I CCTNAGG 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1255
BsuRI GGCC 4 cut(s) 432, 1026, 1118, 1326
BtgI CCRYGG 2 cut(s) 32, 1608
BtsCI GGATG 5 cut(s) 540, 748, 1066, 1362, 1374
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 399, 715, 1570
CaiI CAGNNNCTG 1 cut(s) 1178
Cfr13I GGNCC 5 cut(s) 431, 456, 950, 1324, 1444
CseI GACGC 2 cut(s) 227, 495
Csp6I GTAC 3 cut(s) 246, 824, 849
CviAII CATG 6 cut(s) 33, 529, 647, 739, 1016, 1609
CviQI GTAC 3 cut(s) 246, 824, 849
DdeI CTNAG 9 cut(s) 17, 143, 207, 222, 512, 573, 767, 969, 1679
DpnI GATC 6 cut(s) 278, 411, 539, 879, 1069, 1520
DpnII GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
EaeI YGGCCR 1 cut(s) 1024
Eam1104I CTCTTC 2 cut(s) 229, 1623
EarI CTCTTC 2 cut(s) 229, 1623
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 32, 1608
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 3 cut(s) 456, 950, 1444
Eco57I CTGAAG 1 cut(s) 1581
Eco81I CCTNAGG 1 cut(s) 969
EcoO109I RGGNCCY 1 cut(s) 1324
EcoRII CCWGG 2 cut(s) 258, 988
EcoT14I CCWWGG 2 cut(s) 32, 1608
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 32, 1608
FaeI CATG 6 cut(s) 36, 532, 650, 742, 1019, 1612
FaqI GGGAC 4 cut(s) 777, 936, 1211, 1488
FatI CATG 6 cut(s) 32, 528, 646, 738, 1015, 1608
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 2 cut(s) 409, 537
FokI GGATG 5 cut(s) 547, 755, 1073, 1369, 1381
FriOI GRGCYC 1 cut(s) 1051
FspBI CTAG 5 cut(s) 500, 609, 714, 917, 1616
GsaI CCCAGC 1 cut(s) 887
GsuI CTGGAG 2 cut(s) 254, 1158
HaeIII GGCC 4 cut(s) 432, 1026, 1118, 1326
HapII CCGG 1 cut(s) 1027
HgaI GACGC 2 cut(s) 227, 495
Hin1II CATG 6 cut(s) 36, 532, 650, 742, 1019, 1612
HinfI GANTC 8 cut(s) 4, 197, 490, 722, 771, 1031, 1334, 1541
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 478, 811, 937
Hpy188III TCNNGA 5 cut(s) 459, 775, 1122, 1137, 1354
Hpy8I GTNNAC 3 cut(s) 478, 811, 937
HpyAV CCTTC 8 cut(s) 69, 80, 586, 887, 1165, 1178, 1419, 1445
HpyCH4III ACNGT 2 cut(s) 874, 1267
HpyCH4V TGCA 4 cut(s) 635, 671, 1181, 1502
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 920, 1115, 1184, 1193, 1562, 1565, 1574
HpyF3I CTNAG 9 cut(s) 17, 143, 207, 222, 512, 573, 767, 969, 1679
Hsp92II CATG 6 cut(s) 36, 532, 650, 742, 1019, 1612
Ksp22I TGATCA 2 cut(s) 409, 537
Kzo9I GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
LmnI GCTCC 5 cut(s) 26, 144, 928, 994, 1612
Lsp1109I GCAGC 8 cut(s) 331, 490, 665, 932, 1165, 1291, 1543, 1577
LweI GCATC 4 cut(s) 244, 514, 1196, 1683
MaeI CTAG 5 cut(s) 500, 609, 714, 917, 1616
MaeIII GTNAC 3 cut(s) 507, 904, 1204
MalI GATC 6 cut(s) 278, 411, 539, 879, 1069, 1520
MboI GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
MboII GAAGA 7 cut(s) 246, 437, 740, 1031, 1235, 1437, 1640
MfeI CAATTG 2 cut(s) 909, 1101
MhlI GDGCHC 2 cut(s) 1051, 1423
MlyI GAGTC 4 cut(s) 191, 731, 1040, 1535
MmeI TCCRAC 4 cut(s) 195, 538, 705, 1180
MroXI GAANNNNTTC 1 cut(s) 1674
MseI TTAA 6 cut(s) 351, 420, 956, 1043, 1055, 1235
MslI CAYNNNNRTG 2 cut(s) 533, 1020
MspA1I CMGCKG 1 cut(s) 274
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 3 cut(s) 260, 990, 1028
MunI CAATTG 2 cut(s) 909, 1101
MvaI CCWGG 2 cut(s) 260, 990
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 8 cut(s) 263, 920, 1115, 1184, 1193, 1562, 1565, 1574
NciI CCSGG 1 cut(s) 1028
NcoI CCATGG 2 cut(s) 32, 1608
NdeII GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 6 cut(s) 36, 532, 650, 742, 1019, 1612
NlaIV GGNNCC 6 cut(s) 582, 952, 975, 996, 1325, 1445
NmeAIII GCCGAG 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 507
PasI CCCWGGG 1 cut(s) 989
PdmI GAANNNNTTC 1 cut(s) 1674
PfeI GAWTC 3 cut(s) 490, 771, 1334
PflMI CCANNNNNTGG 1 cut(s) 647
PleI GAGTC 4 cut(s) 191, 730, 1039, 1535
PpsI GAGTC 4 cut(s) 191, 730, 1039, 1535
Psp6I CCWGG 2 cut(s) 258, 988
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 2 cut(s) 258, 988
PspN4I GGNNCC 6 cut(s) 582, 952, 975, 996, 1325, 1445
PspPI GGNCC 5 cut(s) 431, 456, 950, 1324, 1444
PstI CTGCAG 1 cut(s) 1183
PstNI CAGNNNCTG 1 cut(s) 1178
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 3 cut(s) 247, 825, 850
RsaNI GTAC 3 cut(s) 246, 824, 849
RseI CAYNNNNRTG 2 cut(s) 533, 1020
SaqAI TTAA 6 cut(s) 351, 420, 956, 1043, 1055, 1235
Sau3AI GATC 6 cut(s) 276, 409, 537, 877, 1067, 1518
Sau96I GGNCC 5 cut(s) 431, 456, 950, 1324, 1444
SchI GAGTC 4 cut(s) 191, 731, 1040, 1535
ScrFI CCNGG 3 cut(s) 260, 990, 1028
SduI GDGCHC 2 cut(s) 1051, 1423
SfaNI GCATC 4 cut(s) 244, 514, 1196, 1683
SfcI CTRYAG 2 cut(s) 1179, 1398
SinI GGWCC 3 cut(s) 456, 950, 1444
SmiMI CAYNNNNRTG 2 cut(s) 533, 1020
SmlI CTYRAG 3 cut(s) 350, 1379, 1469
SmoI CTYRAG 3 cut(s) 350, 1379, 1469
SsiI CCGC 7 cut(s) 43, 65, 355, 364, 803, 1131, 1577
SspI AATATT 2 cut(s) 109, 1585
SspMI CTAG 5 cut(s) 500, 609, 714, 917, 1616
StyD4I CCNGG 3 cut(s) 258, 988, 1026
StyI CCWWGG 2 cut(s) 32, 1608
TaaI ACNGT 2 cut(s) 874, 1267
TaqI TCGA 2 cut(s) 1423, 1521
TaqII GACCGA 1 cut(s) 938
TauI GCSGC 2 cut(s) 806, 1133
TfiI GAWTC 3 cut(s) 490, 771, 1334
Tru1I TTAA 6 cut(s) 351, 420, 956, 1043, 1055, 1235
Tru9I TTAA 6 cut(s) 351, 420, 956, 1043, 1055, 1235
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 507
TseI GCWGC 8 cut(s) 344, 503, 678, 920, 1178, 1279, 1556, 1565
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 5 cut(s) 405, 438, 800, 1032, 1500
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 456, 950, 1444
XapI RAATTY 3 cut(s) 959, 979, 1462
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 1674
XspI CTAG 5 cut(s) 500, 609, 714, 917, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.