Rorug07G0017200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
1366376 .. 1367455
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0017200.1

Sequence Viewer

Length: 423 bp
ATGAAAATAAGTCCCTCCTCTTGTGAGCGAGGGTTTGGGTGTTTCTGTGTAGTGTCGATGTCATTGTTATGGTGTCATGGTCGTTCTGTTGTGTCATGGTCTGGTCTTTTGTCGGTGCTTTCTGGTTATCAACGTGATGGTAAATCACCCTTACACGTGGTCTGGCTGTTTTGGGACACGGTGTTCGAACTGGTGAAAACAGTTCATCTTAATGTTGGTGGCTGGGTTGTATCGTTACAAGTTTGGTTGTTACTCATTGTAGCTCGCGGGAAGAAGAAGAAGAATGAGGAGGAGGAAAAGAGGGGAAAAGAATCGCGTGAAAACGAGGAACTGTATTGTGATTGGATACACTCATTTTGCAATATATTCTCTTCATATACTAGAAGAAAATATAACCAATACTTTTTACTATACTACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.43

Weight (kDa)

8.92

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 267, 316
AciI CCGC 1 cut(s) 267
AcvI CACGTG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AsuHPI GGTGA 2 cut(s) 138, 205
AsuII TTCGAA 1 cut(s) 186
BbrPI CACGTG 1 cut(s) 157
BccI CCATC 1 cut(s) 131
BciVI GTATCC 1 cut(s) 339
BfaI CTAG 1 cut(s) 381
BfuI GTATCC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 3 cut(s) 7, 302, 305
BseYI CCCAGC 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 267, 316
BslFI GGGAC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 186
BspACI CCGC 1 cut(s) 267
BspFNI CGCG 2 cut(s) 267, 316
BspT104I TTCGAA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 181, 202, 333
Bst6I CTCTTC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 265
BstFNI CGCG 2 cut(s) 267, 316
BstUI CGCG 2 cut(s) 267, 316
BsuI GTATCC 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 265
CviAII CATG 2 cut(s) 77, 96
CviJI RGCY 3 cut(s) 166, 222, 263
CviKI_1 RGCY 3 cut(s) 166, 222, 263
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco72I CACGTG 1 cut(s) 157
FaeI CATG 2 cut(s) 80, 99
FaiI YATR 8 cut(s) 70, 78, 97, 365, 376, 378, 393, 412
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 76, 95
FauI CCCGC 1 cut(s) 260
FspBI CTAG 1 cut(s) 381
GsaI CCCAGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 80, 99
HinfI GANTC 1 cut(s) 311
HphI GGTGA 2 cut(s) 138, 205
HpyCH4III ACNGT 3 cut(s) 181, 202, 333
HpyCH4IV ACGT 2 cut(s) 133, 156
HpyCH4V TGCA 1 cut(s) 360
HpySE526I ACGT 2 cut(s) 133, 156
Hsp92II CATG 2 cut(s) 80, 99
LpnPI CCDG 5 cut(s) 87, 108, 148, 176, 208
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 133, 156
MaeIII GTNAC 2 cut(s) 234, 249
MboII GAAGA 6 cut(s) 283, 286, 289, 292, 363, 396
MnlI CCTC 8 cut(s) 23, 25, 28, 280, 283, 286, 294, 319
MseI TTAA 2 cut(s) 210, 421
MslI CAYNNNNRTG 2 cut(s) 67, 210
MvnI CGCG 2 cut(s) 267, 316
NlaIII CATG 2 cut(s) 80, 99
NspV TTCGAA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 311
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 157
PspCI CACGTG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 67, 210
SaqAI TTAA 2 cut(s) 210, 421
SetI ASST 3 cut(s) 136, 159, 265
SfuI TTCGAA 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 67, 210
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 381
TaaI ACNGT 3 cut(s) 181, 202, 333
TaiI ACGT 2 cut(s) 136, 159
TaqI TCGA 2 cut(s) 56, 186
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 210, 421
Tru9I TTAA 2 cut(s) 210, 421
TspDTI ATGAA 3 cut(s) 17, 194, 363
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.