Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008591

Physical Location & Seq

Genomic Coordinates Forward (+)

12066422 .. 12071017

Gene Structure 4596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGACTTTAATAAACCTCAGCTCCCTATCCCCATGGCTCTCTCGTCTCTCTCACTCCTCTCCACCACTCCCCATTATCACCACCAACGCAACCAACGCCTTGCTGTTCAGAATCCAAACTACTTCCATCAACTTCTCCAAGCTCCTCACAACAAAAGCGTCATTGGGTGAGAGCGAAAGTGGTAGTGGGTTGGCAGAGGACTCTGTCTCCGAGTTGTTAGATGATGAGTTGCTTAGTAAAGTTTCGGGTGCTAAGGACGCCCAAGAAGCACTCCAGATGATCGCAGAAATTACTGGGAGAAATGGTGGTTTTGTGAGTGCTTCTGATTGTTGTGCTATTGTATCAGCTGCCCTTAAAAGGAACAACCCTGACCTGGCTCTCTCTGTTTTTTATGAAATGCGTGCGAGTTTTGATCAAGGTGTTAATGAAAATGGCCCTCTTGTTGAGAGGTGGAAGTGGTCCAGACCAGATGTACGCGTATACACATCATTGATTCTGGGTCTAGCTGCATCACTGAAAGTTTCTGATGCCCTTAGGATGATCAACAATATTTGCCGAGTAGGAGTATCTCCTGCTGAGGAGGTCCCATTTGGGAAGGTTGTTAGGTGTCCAAGCTGTATGATAGCTGTTGCTGTTGCACAACCACAACATGGTATTCAGATAGTGTCGTGTGCAAAGTGCTGCTACCAATACGAACTTATTTCTGGCAACATAGCTAGTATTGAGTCAGAAGAAATCAGCATGGATGTTCCAGCTTGGAAAAGGGGCCTAAGATTCCTGCAAATAATGAAGCAAAGTGTTCCTGCTGCTGTTCACTCCATTGTGGTTCAAACCCCTTCTGGTATGGCTCGTACAAACAGGTTTGCTACTGAAACAGTTGATCTCCCAGCACAGGAAGGAGAAAGGGTAACTATTGCTCTAGCAGCTCCATCAAGTGTTTACAGAGAGGTGGGGCCCTTAAAATTTAGTCCTAAGGCTCCCAACTTTTATCCTGGGGAGCCAATCTGCCTGACTAACCATGAAGATGGCCGGGAGTCAAAACTATTAAGAGCCCCTATAAAAGACAGAGGATCTTCGCTAACAAACCCCTCCATCCTTTTTCCAATTGTTGCTGTTTTGGCTTCTGGAAATGCTGCCTCTGGAGTTATAGACCCCAGCCTTCCCCAATTCCTTCCAGTTGCTGCAGTGGCATCTCTTGCTGTTGGAGTTACTCTGAACACATTGGTTTTCCCCCAATTGAGTCGTCTTCCTCGGAGATTGGTGGATACAGTTGCTATCAAGCAGCAACTTTTATCTCAATATGACACACTCCAATCTCGTATAAAGAGCCTAAAAGAAGCTGCTGAGAAAGAGGTCTGGATGTTGGCTCGGATGTGCCAACTTGAGAACAAAATTTTCGCCGTAGGAGAGACTTCTTATCGTGCTCGAAGAAGTAGAGTCAAAAGGGTTCGAGAAGGCTTGGAAAATTCTCTCAGGGGACGGATTGAACTTATTGACAGCTATGCAAGAATTTCCTCAATGATCGAAATTGAGGTAGAATTGGACTCTGATGTTCTTGCTGCTGAAGCAGCAAGCAATGTGGAAAATATTGCTGAACAGATACAGCAAACCATGGAGCTAGAAAATCTTGAAGAGAGATGGAGAATACAAGTTGAAGCAAATGATGAGGCAGAAAGACTTCTTAGTTCCCAACCGATGCCCACAGAACAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

572

Amino Acids

62.39

Weight (kDa)

5.53

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64430 AT1G64430 AT1G64430
fragaria_vesca	FvH4_5g04720 FvH4_5g04720
malus_domestica	MD06G1108400.v1.1
prunus_persica	Prupe.5G121000_v2.0.a1 Prupe.5G121000_v2.0.a1
pyrus_communis	pycom06g10180
rosa_chinensis	RchiOBHm_Chr7g0194681
rosa_laevigata	RLG00000004182
rosa_multiflora	Rmu_sc0018264.1_g000003 Rmu_sc0023803.1_g000001 Rmu_sc0034112.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261160
rosa_rugosa	Rorug07G0017200 Rorug07G0017300 Rorug07G0017300
rosa_samantha	Rh7AG144700 Rh7BG144700 Rh7CG148500 Rh7DG145900
rosa_wichuraiana	Rw7G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	477
AclWI	GGATC	1 cut(s)	1078
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	4 cut(s)	962, 1392, 1465, 1509
AcuI	CTGAAG	1 cut(s)	1584
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	474, 853
AfiI	CCNNNNNNNGG	4 cut(s)	357, 373, 650, 892
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	4 cut(s)	830, 1487, 1631, 1655
AjnI	CCWGG	2 cut(s)	372, 991
Alw21I	GWGCWC	1 cut(s)	1426
Alw26I	GTCTC	3 cut(s)	50, 211, 1403
AlwI	GGATC	1 cut(s)	1078
AlwNI	CAGNNNCTG	1 cut(s)	1181
AoxI	GGCC	4 cut(s)	433, 766, 953, 1027
ApaI	GGGCCC	1 cut(s)	957
ApoI	RAATTY	4 cut(s)	962, 1392, 1465, 1509
Asp700I	GAANNNNTTC	1 cut(s)	1677
AspS9I	GGNCC	6 cut(s)	434, 459, 583, 766, 953, 954
AsuC2I	CCSGG	1 cut(s)	1031
AsuHPI	GGTGA	2 cut(s)	70, 179
AvaII	GGWCC	2 cut(s)	459, 583
AxyI	CCTNAGG	2 cut(s)	533, 972
BaeGI	GKGCMC	1 cut(s)	957
BanII	GRGCYC	2 cut(s)	957, 1054
BbsI	GAAGAC	1 cut(s)	1238
Bbv12I	GWGCWC	1 cut(s)	1426
BbvCI	CCTCAGC	2 cut(s)	17, 576
BccI	CCATC	5 cut(s)	134, 937, 1019, 1100, 1632
BceAI	ACGGC	1 cut(s)	1385
BciT130I	CCWGG	2 cut(s)	374, 993
BciVI	GTATCC	1 cut(s)	1258
BclI	TGATCA	2 cut(s)	412, 540
BcnI	CCSGG	1 cut(s)	1031
BcoDI	GTCTC	3 cut(s)	50, 211, 1403
BfaI	CTAG	4 cut(s)	503, 717, 920, 1619
BfmI	CTRYAG	1 cut(s)	1182
BfuI	GTATCC	1 cut(s)	1258
Bme1390I	CCNGG	3 cut(s)	374, 993, 1031
Bme18I	GGWCC	2 cut(s)	459, 583
BmgT120I	GGNCC	6 cut(s)	434, 459, 583, 766, 953, 954
BmiI	GGNNCC	6 cut(s)	585, 767, 954, 955, 978, 999
BmrFI	CCNGG	3 cut(s)	374, 993, 1031
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	4 cut(s)	517, 518, 1199, 1686
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	1238
BpmI	CTGGAG	2 cut(s)	257, 1161
Bpu10I	CCTNAGC	3 cut(s)	17, 252, 576
BpuEI	CTTGAG	1 cut(s)	1403
BpuMI	CCSGG	1 cut(s)	1031
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	32, 992, 1250, 1611
BsaXI	ACNNNNNCTCC	8 cut(s)	5, 35, 191, 221, 289, 319, 891, 921
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 373, 650, 892
Bse1I	ACTGG	2 cut(s)	298, 1175
Bse21I	CCTNAGG	2 cut(s)	533, 972
Bse3DI	GCAATG	1 cut(s)	1582
BseBI	CCWGG	2 cut(s)	374, 993
BseDI	CCNNGG	4 cut(s)	32, 992, 1250, 1611
BseGI	GGATG	5 cut(s)	543, 751, 1092, 1365, 1377
BseLI	CCNNNNNNNGG	4 cut(s)	357, 373, 650, 892
BseMI	GCAATG	1 cut(s)	1582
BseMII	CTCAG	4 cut(s)	31, 567, 1335, 1486
BseNI	ACTGG	2 cut(s)	298, 1175
BseRI	GAGGAG	3 cut(s)	46, 134, 593
BseSI	GKGCMC	1 cut(s)	957
BseYI	CCCAGC	2 cut(s)	886, 1154
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	4 cut(s)	435, 768, 955, 1029
BsiHKAI	GWGCWC	1 cut(s)	1426
BsiSI	CCGG	1 cut(s)	1030
BslFI	GGGAC	2 cut(s)	569, 1491
BslI	CCNNNNNNNGG	4 cut(s)	357, 373, 650, 892
BsmAI	GTCTC	3 cut(s)	50, 211, 1403
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	569, 1491
BsnI	GGCC	4 cut(s)	435, 768, 955, 1029
Bsp120I	GGGCCC	1 cut(s)	953
Bsp1286I	GDGCHC	3 cut(s)	957, 1054, 1426
Bsp143I	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
Bsp19I	CCATGG	2 cut(s)	32, 1611
BspANI	GGCC	4 cut(s)	435, 768, 955, 1029
BspCNI	CTCAG	4 cut(s)	30, 568, 1336, 1485
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	6 cut(s)	585, 767, 954, 955, 978, 999
BspMAI	CTGCAG	1 cut(s)	1186
BspPI	GGATC	1 cut(s)	1078
BsrDI	GCAATG	1 cut(s)	1582
BsrI	ACTGG	2 cut(s)	298, 1175
BssECI	CCNNGG	4 cut(s)	32, 992, 1250, 1611
BssMI	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
BssNAI	GTATAC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	32, 1611
Bst1107I	GTATAC	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	374, 993
Bst4CI	ACNGT	2 cut(s)	877, 1270
Bst6I	CTCTTC	1 cut(s)	1626
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	1196
BstC8I	GCNNGC	2 cut(s)	402, 1573
BstDSI	CCRYGG	2 cut(s)	32, 1611
BstF5I	GGATG	5 cut(s)	543, 751, 1092, 1365, 1377
BstFNI	CGCG	1 cut(s)	477
BstKTI	GATC	6 cut(s)	282, 415, 543, 883, 1073, 1524
BstMAI	GTCTC	3 cut(s)	50, 211, 1403
BstMBI	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
BstMWI	GCNNNNNNNGC	9 cut(s)	95, 257, 266, 923, 1118, 1187, 1196, 1565, 1568
BstNI	CCWGG	2 cut(s)	374, 993
BstSCI	CCNGG	3 cut(s)	372, 991, 1029
BstSFI	CTRYAG	1 cut(s)	1182
BstSLI	GKGCMC	1 cut(s)	957
BstUI	CGCG	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	1238
BstX2I	RGATCY	1 cut(s)	1070
BstXI	CCANNNNNNTGG	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1070
BstZ17I	GTATAC	1 cut(s)	481
Bsu36I	CCTNAGG	2 cut(s)	533, 972
BsuI	GTATCC	1 cut(s)	1258
BsuRI	GGCC	4 cut(s)	435, 768, 955, 1029
BtgI	CCRYGG	2 cut(s)	32, 1611
BtsCI	GGATG	5 cut(s)	543, 751, 1092, 1365, 1377
BtsI	GCAGTG	1 cut(s)	1191
BtsIMutI	CAGTG	2 cut(s)	512, 1191
Cac8I	GCNNGC	2 cut(s)	402, 1573
CaiI	CAGNNNCTG	1 cut(s)	1181
Cfr13I	GGNCC	6 cut(s)	434, 459, 583, 766, 953, 954
CseI	GACGC	2 cut(s)	147, 266
Csp6I	GTAC	2 cut(s)	473, 852
CspCI	CAANNNNNGTGG	2 cut(s)	1560, 1595
CviAII	CATG	5 cut(s)	33, 650, 742, 1019, 1612
CviQI	GTAC	2 cut(s)	473, 852
DpnI	GATC	6 cut(s)	281, 414, 542, 882, 1072, 1523
DpnII	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	1626
EarI	CTCTTC	1 cut(s)	1626
Eco130I	CCWWGG	2 cut(s)	32, 1611
Eco24I	GRGCYC	2 cut(s)	957, 1054
Eco47I	GGWCC	2 cut(s)	459, 583
Eco57I	CTGAAG	1 cut(s)	1584
Eco81I	CCTNAGG	2 cut(s)	533, 972
EcoO109I	RGGNCCY	4 cut(s)	583, 766, 953, 954
EcoRII	CCWGG	2 cut(s)	372, 991
EcoT14I	CCWWGG	2 cut(s)	32, 1611
EcoT38I	GRGCYC	2 cut(s)	957, 1054
ErhI	CCWWGG	2 cut(s)	32, 1611
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	5 cut(s)	36, 653, 745, 1022, 1615
FaqI	GGGAC	2 cut(s)	569, 1491
FatI	CATG	5 cut(s)	32, 649, 741, 1018, 1611
FbaI	TGATCA	2 cut(s)	412, 540
FblI	GTMKAC	1 cut(s)	480
FokI	GGATG	5 cut(s)	550, 758, 1079, 1372, 1384
FriOI	GRGCYC	2 cut(s)	957, 1054
FspBI	CTAG	4 cut(s)	503, 717, 920, 1619
GsaI	CCCAGC	2 cut(s)	890, 1158
GsuI	CTGGAG	2 cut(s)	257, 1161
HaeIII	GGCC	4 cut(s)	435, 768, 955, 1029
HapII	CCGG	1 cut(s)	1030
HgaI	GACGC	2 cut(s)	147, 266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	36, 653, 745, 1022, 1615
HinfI	GANTC	9 cut(s)	111, 200, 493, 725, 774, 1034, 1240, 1437, 1544
HpaII	CCGG	1 cut(s)	1030
HphI	GGTGA	2 cut(s)	70, 179
Hpy166II	GTNNAC	3 cut(s)	481, 814, 940
Hpy188III	TCNNGA	7 cut(s)	274, 462, 1125, 1140, 1357, 1451, 1628
Hpy8I	GTNNAC	3 cut(s)	481, 814, 940
HpyAV	CCTTC	6 cut(s)	589, 846, 890, 1169, 1181, 1448
HpyCH4III	ACNGT	2 cut(s)	877, 1270
HpyCH4V	TGCA	6 cut(s)	509, 638, 674, 781, 1184, 1505
HpyF10VI	GCNNNNNNNGC	9 cut(s)	95, 257, 266, 923, 1118, 1187, 1196, 1565, 1568
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	36, 653, 745, 1022, 1615
Ksp22I	TGATCA	2 cut(s)	412, 540
Kzo9I	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
LmnI	GCTCC	6 cut(s)	26, 147, 931, 982, 997, 1615
LweI	GCATC	4 cut(s)	517, 518, 1199, 1686
MaeI	CTAG	4 cut(s)	503, 717, 920, 1619
MaeIII	GTNAC	2 cut(s)	907, 1207
MalI	GATC	6 cut(s)	281, 414, 542, 882, 1072, 1523
MboI	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
MboII	GAAGA	6 cut(s)	743, 1034, 1065, 1238, 1440, 1643
MfeI	CAATTG	2 cut(s)	1104, 1235
MflI	RGATCY	1 cut(s)	1070
MhlI	GDGCHC	3 cut(s)	957, 1054, 1426
MluI	ACGCGT	1 cut(s)	475
MlyI	GAGTC	6 cut(s)	194, 734, 1043, 1249, 1446, 1538
MmeI	TCCRAC	1 cut(s)	1183
MroXI	GAANNNNTTC	1 cut(s)	1677
MseI	TTAA	5 cut(s)	8, 354, 423, 959, 1046
MslI	CAYNNNNRTG	1 cut(s)	1023
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	1030
MspR9I	CCNGG	3 cut(s)	374, 993, 1031
MunI	CAATTG	2 cut(s)	1104, 1235
MvaI	CCWGG	2 cut(s)	374, 993
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	9 cut(s)	95, 257, 266, 923, 1118, 1187, 1196, 1565, 1568
NciI	CCSGG	1 cut(s)	1031
NcoI	CCATGG	2 cut(s)	32, 1611
NdeII	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
NlaIII	CATG	5 cut(s)	36, 653, 745, 1022, 1615
NlaIV	GGNNCC	6 cut(s)	585, 767, 954, 955, 978, 999
NmeAIII	GCCGAG	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	1677
PfeI	GAWTC	3 cut(s)	111, 493, 774
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	650
PleI	GAGTC	6 cut(s)	194, 733, 1042, 1248, 1445, 1538
PpsI	GAGTC	6 cut(s)	194, 733, 1042, 1248, 1445, 1538
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	2 cut(s)	372, 991
PspFI	CCCAGC	2 cut(s)	886, 1154
PspGI	CCWGG	2 cut(s)	372, 991
PspN4I	GGNNCC	6 cut(s)	585, 767, 954, 955, 978, 999
PspOMI	GGGCCC	1 cut(s)	953
PspPI	GGNCC	6 cut(s)	434, 459, 583, 766, 953, 954
PspPPI	RGGWCCY	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	1186
PstNI	CAGNNNCTG	1 cut(s)	1181
PsuI	RGATCY	1 cut(s)	1070
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	474, 853
RsaNI	GTAC	2 cut(s)	473, 852
RseI	CAYNNNNRTG	1 cut(s)	1023
SaqAI	TTAA	5 cut(s)	8, 354, 423, 959, 1046
Sau3AI	GATC	6 cut(s)	279, 412, 540, 880, 1070, 1521
Sau96I	GGNCC	6 cut(s)	434, 459, 583, 766, 953, 954
SchI	GAGTC	6 cut(s)	194, 734, 1043, 1249, 1446, 1538
ScrFI	CCNGG	3 cut(s)	374, 993, 1031
SduI	GDGCHC	3 cut(s)	957, 1054, 1426
SfaNI	GCATC	4 cut(s)	517, 518, 1199, 1686
SfcI	CTRYAG	1 cut(s)	1182
SinI	GGWCC	2 cut(s)	459, 583
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
SspI	AATATT	2 cut(s)	550, 1588
SspMI	CTAG	4 cut(s)	503, 717, 920, 1619
StyD4I	CCNGG	3 cut(s)	372, 991, 1029
StyI	CCWWGG	2 cut(s)	32, 1611
TaaI	ACNGT	2 cut(s)	877, 1270
TaqI	TCGA	3 cut(s)	1426, 1450, 1524
TfiI	GAWTC	3 cut(s)	111, 493, 774
Tru1I	TTAA	5 cut(s)	8, 354, 423, 959, 1046
Tru9I	TTAA	5 cut(s)	8, 354, 423, 959, 1046
TscAI	CASTG	2 cut(s)	519, 1191
TspDTI	ATGAA	4 cut(s)	408, 441, 803, 1035
TspGWI	ACGGA	1 cut(s)	1495
TspRI	CASTG	2 cut(s)	519, 1191
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	459, 583
XapI	RAATTY	4 cut(s)	962, 1392, 1465, 1509
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	1677
XspI	CTAG	4 cut(s)	503, 717, 920, 1619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.