AT1G64600

Methyltransferase-like protein 17, mitochondrial

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23995909 .. 23998832
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64600.1

Sequence Viewer

Length: 1614 bp
ATGGCGAATGCCCAGAAAGTCTTCACTGTAGAAACCCTAAGATCTGCATCGAAACAGTGTCTCCGCTGCCTAGTCGTCCCCGTCCGTCTCCGCCGCGCTATTAAGAAATATCTCCGCGAGGAAGATGATCCTCACATTAGGAAGAAGGTGCGTCAGTTATCGGAATCATTCCAAGAGATCAAGGACACCAATCTTCAGTTACCTGAAACCACGGCCAAGAGTCTGGCTGATTCTATGAACTCGCTAGAGACCAAACGATGGAAGATACAAACCGTTTATGGAGATAGCGGTCTCCAATACAGAGACGGTGAGACTGCTGCTTACATTGCTTCTCGTATGCCTGCCGTCTTTTCCGTCTGCTATAGAGTCCTCATCGAGATTCGTCGAAGAGTACCAGGTTTTACGCCTACAAGAGTGCTGGATTTTGGTGCTGGCACTGGTTCAGGTTTCTGGGCGGTTAAAGAGGTTTGGCCTAAGTCTGTGGAGAAAGTAAATATAGTGGAACCATCTCAATCAATGCAGCGTGCAGGACGTAACTTAATCCAGGGCCTTAAGGATTTGCCTCTGATCCATGGGTATACTAGCCTGCTAGCTCTTAATAAAGAGATCAACAAAAAGTCTGAGAGGAAACATGATCTTGTCATCGCTTCCTATGTGTTAGGGGAGATACCATCTCTGAAAGACAGGATTACTGTGGTTCGCCAGCTCTGGGACCTTACAGATGATCTCTTGGTTTTGGTTGAACCAGGAACGCCACACGGTGCTAATATTATATCTCAGATGCGGTCCCATATACTGTGGATGGAGAAGAGGAAACTGCGTAAACTGGAAAAGAAAATGAAGAAAGATGGAAAGGAGGTGCTCGATCTCAAATCTGGTGCGCATATTGTTGCTCCATGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTGGAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCGTCTCAGCGTTCCTACAAGCGTACAAAGGGTGTCCCCCTACGTGGGTTTGAGGATGAGAAGTTTTGTTTTGTGGCTTTCAGGAGAGGTCAGCGCCCACGGGAGTTGTGGCCTCTTGACGGTATGAAGTTGGAGACATTGAAGGAGAGACGCGCAAATAAGAAACCCGAGGATCTTGAGATTGATTATGAGGACTTTATCAAATCACAGGTGGTTGAAGTGCCTTACATTGATCCAAGAGCTTATGACTCCGACACCATGGATGAGAACGAGGAGGAACAAGAAGACGGTGGAGGTACTGATGAGGATGAAGAAGACAAGATTGAAGAGGAAATAGAAGAGGAGAGTGAGAGGGCGAGTGTGGGAGGCGGATGGGGAAGAATCATATTCCCTCCATTCCGCAAAGGGAAACAAGTGACGTTGGATATGTGTGTGCCAACCAAAGAAGATGGGTCCGAGGGAGCCTTTGAAAGGAGAGTGATAACAAAAAGCAAAAACCCGGATCTTCATTTGCAGGCCAAGAAATCCTTTTGGGGAGACTTATGGCCTCTCACGACTCAACAAGAAAATGGCAAAAAGAAGCAAGTAGATGCTGAGTGGTGTCGCCCAGACGAAGACCAGAAATGGAGTGGTTGGCCTTAG

Protein Analysis

537

Amino Acids

61.79

Weight (kDa)

8.61

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rsm22 PF09243 104 - 356 2.7e-49 Mitochondrial small ribosomal subunit Rsm22
Rsm22 PF09243 441 - 507 7.3e-08 Mitochondrial small ribosomal subunit Rsm22
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 578
AccII CGCG 3 cut(s) 96, 117, 1125
AclWI GGATC 5 cut(s) 122, 562, 1152, 1199, 1482
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 761
AfaI GTAC 4 cut(s) 393, 941, 997, 1270
AfiI CCNNNNNNNGG 7 cut(s) 258, 709, 908, 1016, 1017, 1091, 1443
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 5 cut(s) 743, 1114, 1190, 1298, 1442
AjnI CCWGG 3 cut(s) 394, 543, 745
AluBI AGCT 3 cut(s) 593, 706, 1214
AluI AGCT 3 cut(s) 593, 706, 1214
Alw21I GWGCWC 1 cut(s) 864
AlwI GGATC 5 cut(s) 122, 562, 1152, 1199, 1482
Ama87I CYCGRG 1 cut(s) 1139
AoxI GGCC 7 cut(s) 213, 470, 547, 1082, 1488, 1517, 1607
ApeKI GCWGC 3 cut(s) 66, 317, 520
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 4 cut(s) 98, 883, 1068, 1127
AspS9I GGNCC 4 cut(s) 547, 712, 786, 1425
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 1 cut(s) 320
AsuNHI GCTAGC 1 cut(s) 589
AvaI CYCGRG 1 cut(s) 1139
AvaII GGWCC 3 cut(s) 712, 786, 1425
BbsI GAAGAC 4 cut(s) 13, 1263, 1293, 1593
Bbv12I GWGCWC 1 cut(s) 864
BbvI GCAGC 3 cut(s) 53, 304, 532
BccI CCATC 8 cut(s) 252, 514, 679, 796, 842, 902, 1338, 1415
BceAI ACGGC 2 cut(s) 228, 329
BciT130I CCWGG 3 cut(s) 396, 545, 747
BcnI CCSGG 1 cut(s) 1472
BfaI CTAG 4 cut(s) 71, 245, 582, 590
BfmI CTRYAG 2 cut(s) 27, 361
BfoI RGCGCY 1 cut(s) 1069
BfrI CTTAAG 1 cut(s) 551
BglII AGATCT 1 cut(s) 41
BisI GCNGC 4 cut(s) 67, 94, 318, 521
BlsI GCNGC 4 cut(s) 68, 95, 319, 522
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 4 cut(s) 396, 545, 747, 1472
Bme18I GGWCC 3 cut(s) 712, 786, 1425
BmeT110I CYCGRG 1 cut(s) 1139
BmgT120I GGNCC 4 cut(s) 547, 712, 786, 1425
BmiI GGNNCC 5 cut(s) 504, 713, 788, 1426, 1435
BmrFI CCNGG 4 cut(s) 396, 545, 747, 1472
BmsI GCATC 3 cut(s) 56, 771, 1552
BmtI GCTAGC 1 cut(s) 593
BpiI GAAGAC 4 cut(s) 13, 1263, 1293, 1593
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 1 cut(s) 1472
BsaAI YACGTR 1 cut(s) 1016
BsaBI GATNNNNATC 1 cut(s) 46
BsaI GGTCTC 2 cut(s) 242, 296
BsaJI CCNNGG 7 cut(s) 210, 544, 571, 1070, 1140, 1230, 1428
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 7 cut(s) 258, 709, 908, 1016, 1017, 1091, 1443
Bse1I ACTGG 3 cut(s) 442, 831, 937
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 3 cut(s) 396, 545, 747
BseDI CCNNGG 7 cut(s) 210, 544, 571, 1070, 1140, 1230, 1428
BseGI GGATG 5 cut(s) 807, 1033, 1240, 1285, 1349
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 7 cut(s) 258, 709, 908, 1016, 1017, 1091, 1443
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 4 cut(s) 612, 791, 992, 1557
BseNI ACTGG 3 cut(s) 442, 831, 937
BseRI GAGGAG 2 cut(s) 1259, 1328
BseXI GCAGC 3 cut(s) 53, 304, 532
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 3 cut(s) 96, 117, 1125
BshFI GGCC 7 cut(s) 215, 472, 549, 1084, 1490, 1519, 1609
BsiHKAI GWGCWC 1 cut(s) 864
BsiHKCI CYCGRG 1 cut(s) 1139
BsiSI CCGG 1 cut(s) 1472
BslFI GGGAC 4 cut(s) 62, 725, 772, 992
BslI CCNNNNNNNGG 7 cut(s) 258, 709, 908, 1016, 1017, 1091, 1443
BsmBI CGTCTC 4 cut(s) 92, 297, 981, 1114
BsmFI GGGAC 4 cut(s) 62, 725, 772, 992
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 7 cut(s) 215, 472, 549, 1084, 1490, 1519, 1609
Bso31I GGTCTC 2 cut(s) 242, 296
BsoBI CYCGRG 1 cut(s) 1139
Bsp1286I GDGCHC 1 cut(s) 864
Bsp19I CCATGG 2 cut(s) 571, 1230
BspANI GGCC 7 cut(s) 215, 472, 549, 1084, 1490, 1519, 1609
BspCNI CTCAG 4 cut(s) 613, 790, 991, 1558
BspFNI CGCG 3 cut(s) 96, 117, 1125
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 5 cut(s) 504, 713, 788, 1426, 1435
BspOI GCTAGC 1 cut(s) 593
BspPI GGATC 5 cut(s) 122, 562, 1152, 1199, 1482
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 2 cut(s) 242, 296
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 442, 831, 937
BssECI CCNNGG 7 cut(s) 210, 544, 571, 1070, 1140, 1230, 1428
BssNAI GTATAC 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 571, 1230
Bst1107I GTATAC 1 cut(s) 579
Bst2UI CCWGG 3 cut(s) 396, 545, 747
Bst6I CTCTTC 4 cut(s) 382, 803, 1293, 1305
BstAFI CTTAAG 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 1016
BstC8I GCNNGC 7 cut(s) 342, 433, 525, 587, 591, 704, 1488
BstDEI CTNAG 7 cut(s) 38, 474, 621, 777, 978, 1566, 1611
BstDSI CCRYGG 4 cut(s) 210, 571, 1070, 1230
BstENI CCTNNNNNAGG 1 cut(s) 1441
BstF5I GGATG 5 cut(s) 807, 1033, 1240, 1285, 1349
BstFNI CGCG 3 cut(s) 96, 117, 1125
BstH2I RGCGCY 1 cut(s) 1069
BstHHI GCGC 4 cut(s) 98, 883, 1068, 1127
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 3 cut(s) 396, 545, 747
BstSCI CCNGG 4 cut(s) 394, 543, 745, 1470
BstSFI CTRYAG 2 cut(s) 27, 361
BstUI CGCG 3 cut(s) 96, 117, 1125
BstV1I GCAGC 3 cut(s) 53, 304, 532
BstV2I GAAGAC 4 cut(s) 13, 1263, 1293, 1593
BstX2I RGATCY 3 cut(s) 41, 1144, 1474
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 3 cut(s) 41, 1144, 1474
BstZ17I GTATAC 1 cut(s) 579
BsuRI GGCC 7 cut(s) 215, 472, 549, 1084, 1490, 1519, 1609
BtgI CCRYGG 4 cut(s) 210, 571, 1070, 1230
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 5 cut(s) 807, 1033, 1240, 1285, 1349
BtsIMutI CAGTG 4 cut(s) 24, 62, 435, 930
Cac8I GCNNGC 7 cut(s) 342, 433, 525, 587, 591, 704, 1488
CciI TCATGA 1 cut(s) 904
CfoI GCGC 4 cut(s) 98, 883, 1068, 1127
Cfr13I GGNCC 4 cut(s) 547, 712, 786, 1425
CseI GACGC 2 cut(s) 140, 1131
CsiI ACCWGGT 1 cut(s) 394
Csp6I GTAC 4 cut(s) 392, 940, 996, 1269
CspCI CAANNNNNGTGG 2 cut(s) 1059, 1094
CviAII CATG 5 cut(s) 572, 632, 897, 905, 1231
CviQI GTAC 4 cut(s) 392, 940, 996, 1269
DdeI CTNAG 7 cut(s) 38, 474, 621, 777, 978, 1566, 1611
DraIII CACNNNGTG 1 cut(s) 761
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 382, 803, 1293, 1305
EarI CTCTTC 4 cut(s) 382, 803, 1293, 1305
EciI GGCGGA 2 cut(s) 80, 1356
Eco130I CCWWGG 2 cut(s) 571, 1230
Eco31I GGTCTC 2 cut(s) 242, 296
Eco47I GGWCC 3 cut(s) 712, 786, 1425
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 1441
EcoO109I RGGNCCY 2 cut(s) 547, 712
EcoRII CCWGG 3 cut(s) 394, 543, 745
EcoT14I CCWWGG 2 cut(s) 571, 1230
ErhI CCWWGG 2 cut(s) 571, 1230
Esp3I CGTCTC 4 cut(s) 92, 297, 981, 1114
FaeI CATG 5 cut(s) 575, 635, 900, 908, 1234
FalI AAGNNNNNCTT 2 cut(s) 1484, 1516
FaqI GGGAC 4 cut(s) 62, 725, 772, 992
FatI CATG 5 cut(s) 571, 631, 896, 904, 1230
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 4 cut(s) 67, 94, 318, 521
FokI GGATG 5 cut(s) 814, 1040, 1247, 1292, 1356
Fsp4HI GCNGC 4 cut(s) 67, 94, 318, 521
FspAI RTGCGCAY 1 cut(s) 882
FspBI CTAG 4 cut(s) 71, 245, 582, 590
FspI TGCGCA 1 cut(s) 882
GlaI GCGC 4 cut(s) 97, 882, 1067, 1126
GluI GCNGC 4 cut(s) 67, 94, 318, 521
HaeII RGCGCY 1 cut(s) 1069
HaeIII GGCC 7 cut(s) 215, 472, 549, 1084, 1490, 1519, 1609
HapII CCGG 1 cut(s) 1472
HgaI GACGC 2 cut(s) 140, 1131
HhaI GCGC 4 cut(s) 98, 883, 1068, 1127
Hin1II CATG 5 cut(s) 575, 635, 900, 908, 1234
Hin6I GCGC 4 cut(s) 96, 881, 1066, 1125
HinP1I GCGC 4 cut(s) 96, 881, 1066, 1125
HinfI GANTC 8 cut(s) 164, 220, 230, 366, 379, 1220, 1353, 1528
HpaII CCGG 1 cut(s) 1472
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 579, 824
Hpy188I TCNGA 7 cut(s) 163, 567, 622, 678, 780, 1225, 1429
Hpy188III TCNNGA 6 cut(s) 376, 905, 1054, 1088, 1148, 1525
Hpy8I GTNNAC 2 cut(s) 579, 824
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 139, 1108
HpyCH4IV ACGT 3 cut(s) 532, 1015, 1391
HpyCH4V TGCA 5 cut(s) 47, 520, 527, 964, 1486
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 7 cut(s) 38, 474, 621, 777, 978, 1566, 1611
HpySE526I ACGT 3 cut(s) 532, 1015, 1391
Hsp92II CATG 5 cut(s) 575, 635, 900, 908, 1234
HspAI GCGC 4 cut(s) 96, 881, 1066, 1125
LmnI GCTCC 2 cut(s) 898, 1433
Lsp1109I GCAGC 3 cut(s) 53, 304, 532
LweI GCATC 3 cut(s) 56, 771, 1552
MabI ACCWGGT 1 cut(s) 394
MaeI CTAG 4 cut(s) 71, 245, 582, 590
MaeII ACGT 3 cut(s) 532, 1015, 1391
MaeIII GTNAC 3 cut(s) 198, 533, 1387
MflI RGATCY 3 cut(s) 41, 1144, 1474
MhlI GDGCHC 1 cut(s) 864
MlyI GAGTC 4 cut(s) 229, 375, 1214, 1522
MmeI TCCRAC 3 cut(s) 1083, 1248, 1374
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 5 cut(s) 102, 459, 539, 552, 597
MspA1I CMGCKG 3 cut(s) 66, 922, 958
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 1472
MspR9I CCNGG 4 cut(s) 396, 545, 747, 1472
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 396, 545, 747
MvnI CGCG 3 cut(s) 96, 117, 1125
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 1472
NcoI CCATGG 2 cut(s) 571, 1230
NheI GCTAGC 1 cut(s) 589
NlaIII CATG 5 cut(s) 575, 635, 900, 908, 1234
NlaIV GGNNCC 5 cut(s) 504, 713, 788, 1426, 1435
NmuCI GTSAC 1 cut(s) 1387
NsbI TGCGCA 1 cut(s) 882
PagI TCATGA 1 cut(s) 904
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 4 cut(s) 164, 230, 379, 1353
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 4 cut(s) 68, 95, 319, 522
PleI GAGTC 4 cut(s) 228, 374, 1214, 1522
PpsI GAGTC 4 cut(s) 228, 374, 1214, 1522
Ppu21I YACGTR 1 cut(s) 1016
PpuMI RGGWCCY 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 3 cut(s) 394, 543, 745
PspGI CCWGG 3 cut(s) 394, 543, 745
PspN4I GGNNCC 5 cut(s) 504, 713, 788, 1426, 1435
PspPI GGNCC 4 cut(s) 547, 712, 786, 1425
PspPPI RGGWCCY 1 cut(s) 712
PsuI RGATCY 3 cut(s) 41, 1144, 1474
RsaI GTAC 4 cut(s) 393, 941, 997, 1270
RsaNI GTAC 4 cut(s) 392, 940, 996, 1269
SaqAI TTAA 5 cut(s) 102, 459, 539, 552, 597
SatI GCNGC 4 cut(s) 67, 94, 318, 521
Sau96I GGNCC 4 cut(s) 547, 712, 786, 1425
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 4 cut(s) 229, 375, 1214, 1522
ScrFI CCNGG 4 cut(s) 396, 545, 747, 1472
SduI GDGCHC 1 cut(s) 864
SexAI ACCWGGT 1 cut(s) 394
SfaNI GCATC 3 cut(s) 56, 771, 1552
SfcI CTRYAG 2 cut(s) 27, 361
SinI GGWCC 3 cut(s) 712, 786, 1425
SmlI CTYRAG 2 cut(s) 551, 1148
SmoI CTYRAG 2 cut(s) 551, 1148
SspI AATATT 1 cut(s) 769
SspMI CTAG 4 cut(s) 71, 245, 582, 590
StyD4I CCNGG 4 cut(s) 394, 543, 745, 1470
StyI CCWWGG 2 cut(s) 571, 1230
TaiI ACGT 3 cut(s) 535, 1018, 1394
TaqI TCGA 4 cut(s) 50, 375, 385, 864
TatI WGTACW 1 cut(s) 939
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 4 cut(s) 164, 230, 379, 1353
Tru1I TTAA 5 cut(s) 102, 459, 539, 552, 597
Tru9I TTAA 5 cut(s) 102, 459, 539, 552, 597
TscAI CASTG 4 cut(s) 31, 62, 442, 937
TseFI GTSAC 1 cut(s) 1387
TseI GCWGC 3 cut(s) 66, 317, 520
Tsp45I GTSAC 1 cut(s) 1387
TspDTI ATGAA 5 cut(s) 251, 854, 1112, 1296, 1469
TspGWI ACGGA 2 cut(s) 74, 343
TspRI CASTG 4 cut(s) 31, 62, 442, 937
Van91I CCANNNNNTGG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 3 cut(s) 712, 786, 1425
XagI CCTNNNNNAGG 1 cut(s) 1441
XcmI CCANNNNNNNNNTGG 2 cut(s) 1077, 1598
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 4 cut(s) 71, 245, 582, 590
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.