Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005103

Physical Location & Seq

Genomic Coordinates Forward (+)

6341968 .. 6343800

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGACCACCCTTCTCCCGGAGACAGCTCGGAAGGTCCTAACCCAAGAAGCCATCCGCTCCGCCGCCAAACAGTCCCAGCGCTGCCTCACCGTCCCCGTCAAACTCCGCCGCGCCATTAAAAAGTACCTCCGAGACCAAGAGGAGCCTCACATGAAGCGGAAGGTGCTGAGGCTATCGGAATCCTTCACCCAAATCAAGGATGTCAACTCTCAGCTTATTGCTTCCACCTCGAAGCAGCTGGTTGAGGACCCTTTGCAGTGTGTGGACCAATCCCAGAGGTGGAAGATCAAGAGCTCCTATGGAGATATTGGCCTTACTTATAGAGACGACGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTCTCTGCTTGTCACAGAGTACTCAAGGAGGTTCGTAGAAGGCTGCCGGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGGGTTCGGCTTTCTGGGCACTACGAGAAGTCTGGCCGAATTCCTTGGAGAAAGTTAACTTAGTAGAGCCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTCAAAAGAACTTGCCACTTATTCACAGTTATGGTACCCTCCAATCCTTGACTAAAAACATCAAGAAATCAGAGAGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGGATTACTGTAGTACGCCAACTTTGGGATCTTACGCGGGATGTCCTGATTTTGATAGAACCGGGAACACCACAAGGATCAAATATCATATCTCAGATGCGATCACATATATTATGGATGGAGAAAAGGGTAAGTTATTGTTGTTATAGTGTAAGCCCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

289

Amino Acids

32.83

Weight (kDa)

9.72

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	112 - 281	2.3e-33	Mitochondrial small ribosomal subunit Rsm22
Methyltransf_23	PF13489	131 - 234	1.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64600
fragaria_vesca	FvH4_5g11440 FvH4_5g11440 FvH4_5g11440 FvH4_5g11440
malus_domestica	MD06G1113800.v1.1 MD14G1134800.v1.1
prunus_persica	Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1
pyrus_communis	pycom06g10630
rosa_chinensis	RchiOBHm_Chr2g0131571 RchiOBHm_Chr2g0164461 RchiOBHm_Chr7g0186411 RchiOBHm_Chr7g0186431
rosa_laevigata	RLG00000004846
rosa_multiflora	Rmu_sc0000645.1_g000044
rosa_roxburghii	Rroxscaffold_2G00076410 Rroxscaffold_3G00268160
rosa_rugosa	Rorug02G0594900 Rorug06G0474000 Rorug06G0474000
rosa_samantha	Rh7AG067300 Rh7BG083100 Rh7BG171200 Rh7CG080600 Rh7CG235500 Rh7DG081200
rosa_wichuraiana	Rw7G006770 Rw7G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	2 cut(s)	114, 742
AciI	CCGC	7 cut(s)	58, 63, 66, 109, 112, 160, 742
AclWI	GGATC	3 cut(s)	711, 741, 790
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	4 cut(s)	128, 393, 607, 720
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	4 cut(s)	19, 199, 282, 730
AluBI	AGCT	5 cut(s)	29, 217, 241, 297, 368
AluI	AGCT	5 cut(s)	29, 217, 241, 297, 368
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	4 cut(s)	17, 129, 321, 329
AlwI	GGATC	3 cut(s)	711, 741, 790
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	3 cut(s)	313, 494, 553
ApeKI	GCWGC	4 cut(s)	84, 238, 415, 544
ApoI	RAATTY	1 cut(s)	499
Asp718I	GGTACC	1 cut(s)	605
AspLEI	GCGC	2 cut(s)	84, 116
AspS9I	GGNCC	3 cut(s)	37, 250, 268
AsuC2I	CCSGG	3 cut(s)	20, 420, 768
AsuHPI	GGTGA	2 cut(s)	82, 181
AvaII	GGWCC	3 cut(s)	37, 250, 268
BaeGI	GKGCMC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	4 cut(s)	71, 250, 402, 556
BccI	CCATC	4 cut(s)	62, 538, 700, 817
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcnI	CCSGG	3 cut(s)	20, 420, 768
BcoDI	GTCTC	4 cut(s)	17, 129, 321, 329
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	6 cut(s)	66, 85, 112, 239, 416, 545
BlsI	GCNGC	6 cut(s)	67, 86, 113, 240, 417, 546
BmcAI	AGTACT	1 cut(s)	393
Bme1390I	CCNGG	3 cut(s)	20, 420, 768
Bme18I	GGWCC	3 cut(s)	37, 250, 268
BmgT120I	GGNCC	3 cut(s)	37, 250, 268
BmiI	GGNNCC	3 cut(s)	147, 252, 607
BmrFI	CCNGG	3 cut(s)	20, 420, 768
BmsI	GCATC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	3 cut(s)	20, 420, 768
BsaI	GGTCTC	2 cut(s)	129, 329
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 199, 282, 730
Bse3DI	GCAATG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	4 cut(s)	54, 208, 751, 828
BseLI	CCNNNNNNNGG	4 cut(s)	19, 199, 282, 730
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	161, 227, 812
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	71, 250, 402, 556
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	114, 742
BshFI	GGCC	3 cut(s)	315, 496, 555
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	20, 419, 767
BslFI	GGGAC	2 cut(s)	61, 80
BslI	CCNNNNNNNGG	4 cut(s)	19, 199, 282, 730
BsmAI	GTCTC	4 cut(s)	17, 129, 321, 329
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	61, 80
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	315, 496, 555
Bso31I	GGTCTC	2 cut(s)	129, 329
Bsp1286I	GDGCHC	2 cut(s)	299, 481
Bsp143I	GATC	5 cut(s)	288, 703, 733, 782, 806
BspACI	CCGC	7 cut(s)	58, 63, 66, 109, 112, 160, 742
BspANI	GGCC	3 cut(s)	315, 496, 555
BspCNI	CTCAG	3 cut(s)	162, 226, 811
BspFNI	CGCG	2 cut(s)	114, 742
BspLI	GGNNCC	3 cut(s)	147, 252, 607
BspPI	GGATC	3 cut(s)	711, 741, 790
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	129, 329
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	5 cut(s)	288, 703, 733, 782, 806
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	4 cut(s)	75, 94, 599, 715
BstC8I	GCNNGC	4 cut(s)	366, 457, 549, 553
BstDEI	CTNAG	4 cut(s)	170, 213, 520, 798
BstF5I	GGATG	4 cut(s)	54, 208, 751, 828
BstFNI	CGCG	2 cut(s)	114, 742
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 116
BstKTI	GATC	5 cut(s)	291, 706, 736, 785, 809
BstMAI	GTCTC	4 cut(s)	17, 129, 321, 329
BstMBI	GATC	5 cut(s)	288, 703, 733, 782, 806
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 350, 476
BstSCI	CCNGG	3 cut(s)	18, 418, 766
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	2 cut(s)	114, 742
BstV1I	GCAGC	4 cut(s)	71, 250, 402, 556
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	315, 496, 555
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	4 cut(s)	54, 208, 751, 828
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	4 cut(s)	366, 457, 549, 553
CfoI	GCGC	2 cut(s)	84, 116
Cfr13I	GGNCC	3 cut(s)	37, 250, 268
Csp6I	GTAC	4 cut(s)	127, 392, 606, 719
CviAII	CATG	2 cut(s)	154, 653
CviQI	GTAC	4 cut(s)	127, 392, 606, 719
DdeI	CTNAG	4 cut(s)	170, 213, 520, 798
DpnI	GATC	5 cut(s)	290, 705, 735, 784, 808
DpnII	GATC	5 cut(s)	288, 703, 733, 782, 806
EaeI	YGGCCR	1 cut(s)	494
EciI	GGCGGA	2 cut(s)	52, 98
Ecl136II	GAGCTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	2 cut(s)	129, 329
Eco47I	GGWCC	3 cut(s)	37, 250, 268
Eco47III	AGCGCT	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	297
EcoO109I	RGGNCCY	2 cut(s)	37, 250
EcoRI	GAATTC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	157, 656
FaqI	GGGAC	2 cut(s)	61, 80
FatI	CATG	2 cut(s)	153, 652
FauI	CCCGC	1 cut(s)	735
Fnu4HI	GCNGC	6 cut(s)	66, 85, 112, 239, 416, 545
FokI	GGATG	4 cut(s)	41, 215, 758, 835
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	66, 85, 112, 239, 416, 545
GlaI	GCGC	2 cut(s)	83, 115
GluI	GCNGC	6 cut(s)	66, 85, 112, 239, 416, 545
GsaI	CCCAGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	315, 496, 555
HapII	CCGG	3 cut(s)	20, 419, 767
HhaI	GCGC	2 cut(s)	84, 116
Hin1II	CATG	2 cut(s)	157, 656
Hin6I	GCGC	2 cut(s)	82, 114
HinP1I	GCGC	2 cut(s)	82, 114
HincII	GTYRAC	2 cut(s)	208, 517
HindII	GTYRAC	2 cut(s)	208, 517
HinfI	GANTC	1 cut(s)	182
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	3 cut(s)	20, 419, 767
HphI	GGTGA	2 cut(s)	82, 181
Hpy166II	GTNNAC	3 cut(s)	208, 268, 517
Hpy188I	TCNGA	6 cut(s)	33, 134, 181, 643, 708, 801
Hpy188III	TCNNGA	4 cut(s)	292, 357, 634, 751
Hpy8I	GTNNAC	3 cut(s)	208, 268, 517
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	6 cut(s)	23, 28, 157, 196, 405, 694
HpyCH4III	ACNGT	4 cut(s)	75, 94, 599, 715
HpyCH4V	TGCA	3 cut(s)	259, 544, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 350, 476
HpyF3I	CTNAG	4 cut(s)	170, 213, 520, 798
Hsp92II	CATG	2 cut(s)	157, 656
HspAI	GCGC	2 cut(s)	82, 114
KpnI	GGTACC	1 cut(s)	609
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	288, 703, 733, 782, 806
LmnI	GCTCC	3 cut(s)	65, 145, 302
Lsp1109I	GCAGC	4 cut(s)	71, 250, 402, 556
LweI	GCATC	1 cut(s)	792
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	5 cut(s)	290, 705, 735, 784, 808
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	5 cut(s)	288, 703, 733, 782, 806
MboII	GAAGA	2 cut(s)	298, 364
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	299, 481
MluCI	AATT	2 cut(s)	499, 663
MmeI	TCCRAC	1 cut(s)	423
MseI	TTAA	2 cut(s)	120, 516
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	2 cut(s)	241, 368
MspI	CCGG	3 cut(s)	20, 419, 767
MspR9I	CCNGG	3 cut(s)	20, 420, 768
Mva1269I	GAATGC	1 cut(s)	366
MvnI	CGCG	2 cut(s)	114, 742
MwoI	GCNNNNNNNGC	3 cut(s)	166, 350, 476
NciI	CCSGG	3 cut(s)	20, 420, 768
NdeII	GATC	5 cut(s)	288, 703, 733, 782, 806
NlaIII	CATG	2 cut(s)	157, 656
NlaIV	GGNNCC	3 cut(s)	147, 252, 607
NmuCI	GTSAC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	6 cut(s)	67, 86, 113, 240, 417, 546
PpuMI	RGGWCCY	2 cut(s)	37, 250
Psp124BI	GAGCTC	1 cut(s)	299
Psp5II	RGGWCCY	2 cut(s)	37, 250
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	147, 252, 607
PspPI	GGNCC	3 cut(s)	37, 250, 268
PspPPI	RGGWCCY	2 cut(s)	37, 250
PsuI	RGATCY	1 cut(s)	733
PvuII	CAGCTG	2 cut(s)	241, 368
RsaI	GTAC	4 cut(s)	128, 393, 607, 720
RsaNI	GTAC	4 cut(s)	127, 392, 606, 719
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	120, 516
SatI	GCNGC	6 cut(s)	66, 85, 112, 239, 416, 545
Sau3AI	GATC	5 cut(s)	288, 703, 733, 782, 806
Sau96I	GGNCC	3 cut(s)	37, 250, 268
ScaI	AGTACT	1 cut(s)	393
ScrFI	CCNGG	3 cut(s)	20, 420, 768
SduI	GDGCHC	2 cut(s)	299, 481
SfaNI	GCATC	1 cut(s)	792
SfcI	CTRYAG	1 cut(s)	714
SinI	GGWCC	3 cut(s)	37, 250, 268
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	499, 663
SsiI	CCGC	7 cut(s)	58, 63, 66, 109, 112, 160, 742
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	18, 418, 766
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	75, 94, 599, 715
TaqI	TCGA	1 cut(s)	233
TasI	AATT	2 cut(s)	499, 663
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	2 cut(s)	68, 114
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	120, 516
Tru9I	TTAA	2 cut(s)	120, 516
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	4 cut(s)	84, 238, 415, 544
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	3 cut(s)	37, 250, 268
XapI	RAATTY	1 cut(s)	499
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.