Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005103

Physical Location & Seq

Genomic Coordinates Reverse (-)

4671110 .. 4675626

Gene Structure 4517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAATGCTGTAGGGCACTACGAGAAGTCTGGCCGAATTCCTTGGAGAAAGTTAACTTAGTAGAGCCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTCAAAAGAACTTGCCACTTATTCACAGTTATGGTACCCTCCAATCCTTGACTAAAAACATCAAGAAATCAGAGAGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGGATTACTGTAGTACGCCAACTTTGGGATCTTACGGGGGATGTCCTGATTTTGATAGAACCGGGAACACCACAAGGATCAAATATCATATCTCAGATGCGATCACATATATTATGGATGGAGAAAAGGAAATGCCGTAAATCCAAGGCTGCAATTGATGAAACTTCCAAGGACTTGGTAGTGGCTCGAAAAAGTGGTGCCTATATAGTTGCTCCTTGCTCTCATGATGGGGCATGTCCTTTGGAGAAAGCTGGTAAATATTGTCATTTTGTTCAACGTTTGGAGAGAACTTCTACTCAGCGTGCATACAAGCGCTCCAAGGGTGGTCAGCCGTTACGTGGATTTGAAGATGAGAAATTTAGCTTCATTGCTGTCAGGCGAGGACAAAGACCAAGGGAACCTTGGCCTCTTGATGGTGTGAAATTTGAGACTTTGAAGGAGCAACATGCTAAAAGAACTCTGGAAGATCTTGAAATTGACTATGAGGACCCAGAGGACCAAGTCAGCTCGCAACAAGCTAGCCTCATTCCATTTGAAAAACCAGATCCGATTACCTATGATTCTGATGTCGTGGAAGTTGATGATCATGAGGATAATGAAGAAGAAGAGGAGGAAGATGACACATGTCATGCCGATCTTGGGGGTGGTTGGGGTAGGATTATCTACATGCCTGTTCGGAGGGGCAAGCAGGTAACTATGGATGTGTGTCGATCAACCAACCAGGATGCTTCAGAAGGAACACTTCAACGAATTGTTGTCACAAAGAATAAGAACCCTACATTACATAAGCAGGCCCGAAAGTCTCTCTGGGGAGACTTGTGGCCCTTTCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

359

Amino Acids

40.98

Weight (kDa)

6.35

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	6 - 214	3.2e-30	Mitochondrial small ribosomal subunit Rsm22
Rsm22	PF09243	291 - 356	1.2e-09	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64600
fragaria_vesca	FvH4_5g11440 FvH4_5g11440 FvH4_5g11440 FvH4_5g11440
malus_domestica	MD06G1113800.v1.1 MD14G1134800.v1.1
prunus_persica	Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1
pyrus_communis	pycom06g10630
rosa_chinensis	RchiOBHm_Chr2g0131571 RchiOBHm_Chr2g0164461 RchiOBHm_Chr7g0186411 RchiOBHm_Chr7g0186431
rosa_laevigata	RLG00000004846
rosa_multiflora	Rmu_sc0000645.1_g000044
rosa_roxburghii	Rroxscaffold_2G00076410 Rroxscaffold_3G00268160
rosa_rugosa	Rorug02G0594900 Rorug06G0474000 Rorug06G0474000
rosa_samantha	Rh7AG067300 Rh7BG083100 Rh7BG171200 Rh7CG080600 Rh7CG235500 Rh7DG081200
rosa_wichuraiana	Rw7G006770 Rw7G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	922
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	143, 440
AclI	AACGTT	1 cut(s)	520
AclWI	GGATC	4 cut(s)	249, 279, 328, 782
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	3 cut(s)	37, 599, 665
AcuI	CTGAAG	2 cut(s)	257, 957
AfaI	GTAC	2 cut(s)	145, 258
AfeI	AGCGCT	1 cut(s)	557
AfiI	CCNNNNNNNGG	4 cut(s)	268, 581, 656, 882
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	7 cut(s)	518, 590, 679, 716, 779, 989, 1073
AjnI	CCWGG	1 cut(s)	963
AluBI	AGCT	4 cut(s)	494, 606, 750, 761
AluI	AGCT	4 cut(s)	494, 606, 750, 761
Alw26I	GTCTC	3 cut(s)	665, 1050, 1050
AlwI	GGATC	4 cut(s)	249, 279, 328, 782
Aor51HI	AGCGCT	1 cut(s)	557
AoxI	GGCC	5 cut(s)	32, 91, 647, 1035, 1064
ApeKI	GCWGC	2 cut(s)	82, 392
ApoI	RAATTY	3 cut(s)	37, 599, 665
Asp718I	GGTACC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	4 cut(s)	730, 739, 1036, 1065
AsuC2I	CCSGG	1 cut(s)	306
AsuNHI	GCTAGC	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	730, 739
BaeGI	GKGCMC	1 cut(s)	19
BanI	GGYRCC	2 cut(s)	143, 440
BbvI	GCAGC	2 cut(s)	94, 379
BccI	CCATC	5 cut(s)	76, 238, 355, 464, 650
BceAI	ACGGC	2 cut(s)	363, 559
BciT130I	CCWGG	1 cut(s)	965
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	665, 1050, 1050
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	2 cut(s)	10, 252
BfoI	RGCGCY	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	2 cut(s)	83, 393
BlsI	GCNGC	2 cut(s)	84, 394
Bme1390I	CCNGG	2 cut(s)	306, 965
Bme18I	GGWCC	2 cut(s)	730, 739
BmgT120I	GGNCC	4 cut(s)	730, 739, 1036, 1065
BmiI	GGNNCC	4 cut(s)	145, 442, 642, 732
BmrFI	CCNGG	2 cut(s)	306, 965
BmsI	GCATC	2 cut(s)	330, 958
BmtI	GCTAGC	1 cut(s)	765
BoxI	GACNNNNGTC	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	581
BsaJI	CCNNGG	6 cut(s)	42, 387, 411, 561, 635, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 581, 656, 882
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	965
BseDI	CCNNGG	6 cut(s)	42, 387, 411, 561, 635, 644
BseGI	GGATG	4 cut(s)	289, 366, 949, 973
BseLI	CCNNNNNNNGG	4 cut(s)	268, 581, 656, 882
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	350, 554
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	94, 379
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	5 cut(s)	34, 93, 649, 1037, 1066
BshNI	GGYRCC	2 cut(s)	143, 440
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	4 cut(s)	268, 581, 656, 882
BsmAI	GTCTC	3 cut(s)	665, 1050, 1050
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	5 cut(s)	34, 93, 649, 1037, 1066
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
BspANI	GGCC	5 cut(s)	34, 93, 649, 1037, 1066
BspCNI	CTCAG	2 cut(s)	349, 553
BspHI	TCATGA	2 cut(s)	466, 829
BspLI	GGNNCC	4 cut(s)	145, 442, 642, 732
BspMI	ACCTGC	1 cut(s)	922
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	4 cut(s)	249, 279, 328, 782
BspT107I	GGYRCC	2 cut(s)	143, 440
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	6 cut(s)	42, 387, 411, 561, 635, 644
BssMI	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
BssT1I	CCWWGG	6 cut(s)	42, 387, 411, 561, 635, 644
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	2 cut(s)	137, 253
Bst6I	CTCTTC	1 cut(s)	843
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	7 cut(s)	87, 91, 546, 752, 763, 929, 1035
BstDEI	CTNAG	3 cut(s)	58, 336, 540
BstF5I	GGATG	4 cut(s)	289, 366, 949, 973
BstH2I	RGCGCY	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	9 cut(s)	244, 274, 323, 347, 712, 790, 829, 880, 956
BstMAI	GTCTC	3 cut(s)	665, 1050, 1050
BstMBI	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
BstNI	CCWGG	1 cut(s)	965
BstNSI	RCATGY	4 cut(s)	480, 692, 870, 913
BstPAI	GACNNNNGTC	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	304, 963
BstSFI	CTRYAG	2 cut(s)	10, 252
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	94, 379
BstX2I	RGATCY	3 cut(s)	271, 709, 787
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	3 cut(s)	271, 709, 787
BsuRI	GGCC	5 cut(s)	34, 93, 649, 1037, 1066
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	289, 366, 949, 973
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	7 cut(s)	87, 91, 546, 752, 763, 929, 1035
CciI	TCATGA	2 cut(s)	466, 829
CfoI	GCGC	1 cut(s)	558
Cfr13I	GGNCC	4 cut(s)	730, 739, 1036, 1065
Csp6I	GTAC	2 cut(s)	144, 257
CviAII	CATG	8 cut(s)	191, 467, 477, 689, 830, 867, 872, 910
CviQI	GTAC	2 cut(s)	144, 257
DdeI	CTNAG	3 cut(s)	58, 336, 540
DpnI	GATC	9 cut(s)	243, 273, 322, 346, 711, 789, 828, 879, 955
DpnII	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	6 cut(s)	42, 387, 411, 561, 635, 644
Eco47I	GGWCC	2 cut(s)	730, 739
Eco47III	AGCGCT	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	257, 957
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	963
EcoT14I	CCWWGG	6 cut(s)	42, 387, 411, 561, 635, 644
ErhI	CCWWGG	6 cut(s)	42, 387, 411, 561, 635, 644
FaeI	CATG	8 cut(s)	194, 470, 480, 692, 833, 870, 875, 913
FalI	AAGNNNNNCTT	4 cut(s)	628, 660, 969, 1001
FatI	CATG	8 cut(s)	190, 466, 476, 688, 829, 866, 871, 909
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	2 cut(s)	83, 393
FokI	GGATG	4 cut(s)	296, 373, 956, 980
Fsp4HI	GCNGC	2 cut(s)	83, 393
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	2 cut(s)	83, 393
HaeII	RGCGCY	1 cut(s)	559
HaeIII	GGCC	5 cut(s)	34, 93, 649, 1037, 1066
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	8 cut(s)	194, 470, 480, 692, 833, 870, 875, 913
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	803
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	7 cut(s)	181, 246, 339, 792, 808, 921, 976
Hpy188III	TCNNGA	7 cut(s)	172, 289, 467, 653, 704, 713, 830
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	232, 673, 971
HpyCH4III	ACNGT	2 cut(s)	137, 253
HpyCH4IV	ACGT	2 cut(s)	520, 580
HpyCH4V	TGCA	4 cut(s)	82, 89, 395, 548
HpyF3I	CTNAG	3 cut(s)	58, 336, 540
HpySE526I	ACGT	2 cut(s)	520, 580
Hsp92II	CATG	8 cut(s)	194, 470, 480, 692, 833, 870, 875, 913
HspAI	GCGC	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	826
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
LmnI	GCTCC	3 cut(s)	460, 563, 682
Lsp1109I	GCAGC	2 cut(s)	94, 379
LweI	GCATC	2 cut(s)	330, 958
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	520, 580
MaeIII	GTNAC	3 cut(s)	576, 934, 1000
MalI	GATC	9 cut(s)	243, 273, 322, 346, 711, 789, 828, 879, 955
MboI	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
MboII	GAAGA	6 cut(s)	602, 719, 854, 857, 860, 869
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	3 cut(s)	271, 709, 787
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	7 cut(s)	37, 201, 396, 599, 665, 717, 993
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	306, 965
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	965
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
NheI	GCTAGC	1 cut(s)	761
NlaIII	CATG	8 cut(s)	194, 470, 480, 692, 833, 870, 875, 913
NlaIV	GGNNCC	4 cut(s)	145, 442, 642, 732
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	4 cut(s)	480, 692, 870, 913
PagI	TCATGA	2 cut(s)	466, 829
PciI	ACATGT	1 cut(s)	866
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	803
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	2 cut(s)	84, 394
Ppu21I	YACGTR	1 cut(s)	581
PpuMI	RGGWCCY	1 cut(s)	730
PscI	ACATGT	1 cut(s)	866
PshAI	GACNNNNGTC	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	963
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	4 cut(s)	145, 442, 642, 732
PspPI	GGNCC	4 cut(s)	730, 739, 1036, 1065
PspPPI	RGGWCCY	1 cut(s)	730
PsuI	RGATCY	3 cut(s)	271, 709, 787
PsyI	GACNNNGTC	1 cut(s)	743
RsaI	GTAC	2 cut(s)	145, 258
RsaNI	GTAC	2 cut(s)	144, 257
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	83, 393
Sau3AI	GATC	9 cut(s)	241, 271, 320, 344, 709, 787, 826, 877, 953
Sau96I	GGNCC	4 cut(s)	730, 739, 1036, 1065
ScrFI	CCNGG	2 cut(s)	306, 965
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	330, 958
SfcI	CTRYAG	2 cut(s)	10, 252
SinI	GGWCC	2 cut(s)	730, 739
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	7 cut(s)	37, 201, 396, 599, 665, 717, 993
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	304, 963
StyI	CCWWGG	6 cut(s)	42, 387, 411, 561, 635, 644
TaaI	ACNGT	2 cut(s)	137, 253
TaiI	ACGT	2 cut(s)	523, 583
TaqI	TCGA	2 cut(s)	430, 952
TasI	AATT	7 cut(s)	37, 201, 396, 599, 665, 717, 993
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	2 cut(s)	82, 392
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	3 cut(s)	417, 598, 855
Tth111I	GACNNNGTC	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	730, 739
XapI	RAATTY	3 cut(s)	37, 599, 665
XceI	RCATGY	4 cut(s)	480, 692, 870, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.