RchiOBHm_Chr2g0131571

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
47895101 .. 47895942
842 bp
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UTR
Exon/CDS
Intron
PRQ50291

Sequence Viewer

Length: 255 bp
ATGAAGCAAGACATTATCAGCAAGATGCAGCTCGATGGAGCTCTTTGCTTTCTTATTCTTCTTCGTATAATCTGCTTCAGTCATTGTTGCAGGCTTATTTCCGATTGCCTCATCAACCTCTTGCTGAACCAGAACGTTCTTCATCTTCCTCTGCCAAAGCGTGAACTTGTCATTGCCATTAAAGGGCTTAATGGACGGTTTCACATCTCCTGCTTCGACAATGACTTTGCTGTTCACCATTGCAAAACACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.6

Weight (kDa)

8.56

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 31, 41
AluI AGCT 2 cut(s) 31, 41
Alw21I GWGCWC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsuHPI GGTGA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 29
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmsI GCATC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse3DI GCAATG 2 cut(s) 171, 238
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 2 cut(s) 171, 238
BseXI GCAGC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 43
BsrDI GCAATG 2 cut(s) 171, 238
Bst4CI ACNGT 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 92
CviJI RGCY 4 cut(s) 31, 41, 94, 187
CviKI_1 RGCY 4 cut(s) 31, 41, 94, 187
Ecl136II GAGCTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 43
FaiI YATR 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 164, 235
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 164, 235
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 28, 90, 243
HpySE526I ACGT 1 cut(s) 135
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 76, 143, 223
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 15
MaeII ACGT 1 cut(s) 135
MboII GAAGA 4 cut(s) 50, 53, 131, 137
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 3 cut(s) 119, 128, 159
MseI TTAA 2 cut(s) 180, 189
PkrI GCNGC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 135
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 180, 189
SatI GCNGC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 33, 43, 120, 138, 253
SfaNI GCATC 1 cut(s) 15
SgeI CNNG 9 cut(s) 20, 34, 44, 103, 133, 142, 173, 179, 222
SstI GAGCTC 1 cut(s) 43
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 33, 216
Tru1I TTAA 2 cut(s) 180, 189
Tru9I TTAA 2 cut(s) 180, 189
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 17, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.