Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005103

Physical Location & Seq

Genomic Coordinates Forward (+)

6347605 .. 6351041

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGCAAGACATTATCAGCAAGATGCAGCTCAATGGAGCTCTTTGCTTTCTTATTCTTCTTCGTATAATCTGCTTCAGTCATTGTTGCAGGCTTATCTCCAATTGCCTCATCAACCTCTTGCTGAACCAGAACGTTCTTCATCTTCCTTTGCCAAAGCGTGAAGTTAAATGCCGTAAATCCAAGGCTGCAATTGATGAAACTTCCAAGGACTTGGTAGTGGCTCGAAAAAGTGGTGCCTATATAGTTGCTCCTTGCTCTCATGATGGGGCATGTCCTTTGGAGAAAGCTGGTAAATATTGTCATTTTGTTCAACGTTTGGAGAGAACTTCTACTCAGCGTGCATACAAGCGCTCCAAGGGTGGTCAGCCGTTACGTGGATTTGAAGATGAGAAATTTAGCTTCATTGCTGTCAGGCGAGGACAAAGACCAAGGGAACCTTGGCCTCTTGATGGTGTGAAATTTGAGACTTTGAAGGAGCAACATGCTAAAAGAACTCTGGAAGATCTTGAAATTGACTATGAGGACCCAGAGGACCAAGTCAGCTCGCAACAAGCTAGCCTCATTCCATTTGAAAAACCAGATCCGATTACCTATGATTCTGATGTCGTGGAAGTTGATGATCATGAGGATAATGAAGAAGAAGAGGAGGAAGATGACACATGTCATGCCGATCTTGGGGGTGGTTGGGGTAGGATTATCTACATGCCTGTTCGGAGGGGCAAGCAGGTAACTATGGATGTGTGTCGATCAACCAACCAGGATGCTTCAGAAGGAACACTTCAACGAATTGTTGTCACAAAGAATAAGAACCCTACATTACATAAGCAGGCCCGAAAGTCTCTCTGGGGAGACTTGTGGCCCTTTCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

291

Amino Acids

33.31

Weight (kDa)

6.72

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	76 - 146	2.7e-14	Mitochondrial small ribosomal subunit Rsm22
Rsm22	PF09243	223 - 288	8.2e-10	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64600
fragaria_vesca	FvH4_5g11440 FvH4_5g11440 FvH4_5g11440 FvH4_5g11440
malus_domestica	MD06G1113800.v1.1 MD14G1134800.v1.1
prunus_persica	Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1
pyrus_communis	pycom06g10630
rosa_chinensis	RchiOBHm_Chr2g0131571 RchiOBHm_Chr2g0164461 RchiOBHm_Chr7g0186411 RchiOBHm_Chr7g0186431
rosa_laevigata	RLG00000004846
rosa_multiflora	Rmu_sc0000645.1_g000044
rosa_roxburghii	Rroxscaffold_2G00076410 Rroxscaffold_3G00268160
rosa_rugosa	Rorug02G0594900 Rorug06G0474000 Rorug06G0474000
rosa_samantha	Rh7AG067300 Rh7BG083100 Rh7BG171200 Rh7CG080600 Rh7CG235500 Rh7DG081200
rosa_wichuraiana	Rw7G006770 Rw7G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
AccB1I	GGYRCC	1 cut(s)	236
AclI	AACGTT	2 cut(s)	135, 316
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	395, 461
AcuI	CTGAAG	2 cut(s)	61, 753
AfeI	AGCGCT	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	377, 452, 678
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	7 cut(s)	314, 386, 475, 512, 575, 785, 869
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	6 cut(s)	31, 41, 290, 402, 546, 557
AluI	AGCT	6 cut(s)	31, 41, 290, 402, 546, 557
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	461, 846, 846
AlwI	GGATC	1 cut(s)	578
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	3 cut(s)	443, 831, 860
ApeKI	GCWGC	2 cut(s)	28, 188
ApoI	RAATTY	2 cut(s)	395, 461
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	526, 535, 832, 861
AsuNHI	GCTAGC	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	526, 535
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	40, 175
BccI	CCATC	2 cut(s)	260, 446
BceAI	ACGGC	2 cut(s)	159, 355
BciT130I	CCWGG	1 cut(s)	761
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	461, 846, 846
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	718
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	2 cut(s)	29, 189
BlsI	GCNGC	2 cut(s)	30, 190
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	2 cut(s)	526, 535
BmgT120I	GGNCC	4 cut(s)	526, 535, 832, 861
BmiI	GGNNCC	3 cut(s)	238, 438, 528
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	2 cut(s)	15, 754
BmtI	GCTAGC	1 cut(s)	561
BoxI	GACNNNNGTC	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	183, 207, 357, 431, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 452, 678
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	5 cut(s)	183, 207, 357, 431, 440
BseGI	GGATG	2 cut(s)	745, 769
BseLI	CCNNNNNNNGG	3 cut(s)	377, 452, 678
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	2 cut(s)	40, 175
BshFI	GGCC	3 cut(s)	445, 833, 862
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	377, 452, 678
BsmAI	GTCTC	3 cut(s)	461, 846, 846
BsnI	GGCC	3 cut(s)	445, 833, 862
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	505, 583, 622, 673, 749
BspANI	GGCC	3 cut(s)	445, 833, 862
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	2 cut(s)	262, 625
BspLI	GGNNCC	3 cut(s)	238, 438, 528
BspMI	ACCTGC	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	5 cut(s)	183, 207, 357, 431, 440
BssMI	GATC	5 cut(s)	505, 583, 622, 673, 749
BssT1I	CCWWGG	5 cut(s)	183, 207, 357, 431, 440
Bst2UI	CCWGG	1 cut(s)	761
Bst6I	CTCTTC	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	6 cut(s)	92, 342, 548, 559, 725, 831
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	745, 769
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	5 cut(s)	508, 586, 625, 676, 752
BstMAI	GTCTC	3 cut(s)	461, 846, 846
BstMBI	GATC	5 cut(s)	505, 583, 622, 673, 749
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	4 cut(s)	276, 488, 666, 709
BstPAI	GACNNNNGTC	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	40, 175
BstX2I	RGATCY	2 cut(s)	505, 583
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	2 cut(s)	505, 583
BsuRI	GGCC	3 cut(s)	445, 833, 862
BtsCI	GGATG	2 cut(s)	745, 769
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	6 cut(s)	92, 342, 548, 559, 725, 831
CciI	TCATGA	2 cut(s)	262, 625
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	4 cut(s)	526, 535, 832, 861
CviAII	CATG	7 cut(s)	263, 273, 485, 626, 663, 668, 706
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	5 cut(s)	507, 585, 624, 675, 751
DpnII	GATC	5 cut(s)	505, 583, 622, 673, 749
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	5 cut(s)	183, 207, 357, 431, 440
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	526, 535
Eco47III	AGCGCT	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	61, 753
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	5 cut(s)	183, 207, 357, 431, 440
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	5 cut(s)	183, 207, 357, 431, 440
FaeI	CATG	7 cut(s)	266, 276, 488, 629, 666, 671, 709
FalI	AAGNNNNNCTT	4 cut(s)	424, 456, 765, 797
FatI	CATG	7 cut(s)	262, 272, 484, 625, 662, 667, 705
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	29, 189
FokI	GGATG	2 cut(s)	752, 776
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	29, 189
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	29, 189
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	445, 833, 862
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	266, 276, 488, 629, 666, 671, 709
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	599
Hpy188I	TCNGA	4 cut(s)	588, 604, 717, 772
Hpy188III	TCNNGA	5 cut(s)	263, 449, 500, 509, 626
HpyAV	CCTTC	2 cut(s)	469, 767
HpyCH4IV	ACGT	3 cut(s)	135, 316, 376
HpyCH4V	TGCA	4 cut(s)	28, 90, 191, 344
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	135, 316, 376
Hsp92II	CATG	7 cut(s)	266, 276, 488, 629, 666, 671, 709
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	505, 583, 622, 673, 749
LmnI	GCTCC	4 cut(s)	38, 256, 359, 478
Lsp1109I	GCAGC	2 cut(s)	40, 175
LweI	GCATC	2 cut(s)	15, 754
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	3 cut(s)	135, 316, 376
MaeIII	GTNAC	3 cut(s)	372, 730, 796
MalI	GATC	5 cut(s)	507, 585, 624, 675, 751
MboI	GATC	5 cut(s)	505, 583, 622, 673, 749
MfeI	CAATTG	2 cut(s)	103, 192
MflI	RGATCY	2 cut(s)	505, 583
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	6 cut(s)	103, 192, 395, 461, 513, 789
MseI	TTAA	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	761
MunI	CAATTG	2 cut(s)	103, 192
MvaI	CCWGG	1 cut(s)	761
NdeII	GATC	5 cut(s)	505, 583, 622, 673, 749
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	7 cut(s)	266, 276, 488, 629, 666, 671, 709
NlaIV	GGNNCC	3 cut(s)	238, 438, 528
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	4 cut(s)	276, 488, 666, 709
PagI	TCATGA	2 cut(s)	262, 625
PciI	ACATGT	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	30, 190
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	662
PshAI	GACNNNNGTC	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	43
Psp1406I	AACGTT	2 cut(s)	135, 316
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	3 cut(s)	238, 438, 528
PspPI	GGNCC	4 cut(s)	526, 535, 832, 861
PspPPI	RGGWCCY	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	505, 583
PsyI	GACNNNGTC	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	29, 189
Sau3AI	GATC	5 cut(s)	505, 583, 622, 673, 749
Sau96I	GGNCC	4 cut(s)	526, 535, 832, 861
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	15, 754
SinI	GGWCC	2 cut(s)	526, 535
Sse9I	AATT	6 cut(s)	103, 192, 395, 461, 513, 789
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	5 cut(s)	183, 207, 357, 431, 440
TaiI	ACGT	3 cut(s)	138, 319, 379
TaqI	TCGA	2 cut(s)	226, 748
TasI	AATT	6 cut(s)	103, 192, 395, 461, 513, 789
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	2 cut(s)	28, 188
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	5 cut(s)	17, 131, 213, 394, 651
Tth111I	GACNNNGTC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	526, 535
XapI	RAATTY	2 cut(s)	395, 461
XceI	RCATGY	4 cut(s)	276, 488, 666, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.