MD06G1113800.v1.1

Methyltransferase-like protein 17

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
25196931 .. 25200720
3790 bp
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UTR
Exon/CDS
Intron
MD06G1113800.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGCGACGACTCTGCTCCCGGAGACCGCCCAAAAGCTCCTAACCCGAGAAGCCCTCCGCTCCGCTGCCAAACAATCCCAGCGCTGCCTCACAACCCCCGTCCGCCTCCGCCGCGCCATAAAAAAATACCTCCGAGAGCAGGATGAGCCCCACATGAAGAGGAAGGTGCTGAGGCTATCGGAATCCTTCAGCCAAATCAAGGATGTGAACTCGCAGCTTGTTACGGCGACTTCACAGCAGCTCGTTGAGGACCCTTTGCGGTCTGTCGACCAATCGCAGAGGTGGAAGATCAGGAGCAACTATGGAGATATCGGACTCACCTACAGAGATGACGAGACCATTGCTTATGTTGCTTCCAGAATGCCTGCTGTTTTCTCTGCCTGTCACAGAGTTCTCAAGGAGGTTCGTAGAAGGATACCTGAGTTCTCTCCAGCTAAAGTGTTGGATTTTGGAGCTGGCACGGGCTCGGCTTTCTGGGCACTACGAGAAGTCTGGCCACATTCCTTGGAGAAAGTTAATTTAGTGGAGCCATCCCAATCAATGCAGCGGGCTGGGCAGAAGCTTACACAAGGTCAGAAGAACTTGCCACTTATTCATAGTTATGATAGCCTCCAGTCATTGACAAAAAGTTTCACCAAGTCAGAGCGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTCAAGGATCGAATTACTATAGTACGCCAACTATGGGATCTTACACGGGATGTCCTGGTTTTGATTGAACCTGGAACACCGCAAGGATCTAGTATCATTTCTCAGATGCGTTCTCATATATTATGGATGGAAAAAAGGAAATGCCGTAAATCTAAAGATGGATCTGAAGAAACTTCAAAGGACTTGGTGACTCAAAAGAGTGGTGCATTTATAGTTGCTCCGTGCTCTCATGATGGACAATGTCCGCTGGAAAAAGCTGGAAAGTATTGTCATTTTGTTCAGCGCTTGGAGAGGACATCTGTTCAGCGTGCATTCAAGCGATCCAAGGGTGGGCAACCATTACGTGGCTTTGAAGATGAGAAATTTAGCTTTGTTGCATTCAGGCGAGGACAAAGACCACGGGAACCTTGGCCGCTTGATGGTATGAAATTTGAGACTTTAAAGGAGCAACATGCCAAACGGAGTCCAGAAGATCTCGAGATAGACCTTGATGAGTCAATTAGCTCGCAGCAAGCTGATCTCGTTCCATTTGAAGAACCAAATCCAGTTAACTATGATTCCGATGTTATGGAAACTGATATGGTGGATGAAAATGACAAAAACAACGAAGAGGAAGATGAAACAGGTCATGCTGATCTTGGTGGCGGTTGGGGTAGGATTATCTATATGCCTGTACGAAGGGGCAAACAGGTTACAATGGATGTTTGTCGATCAACCAAACGGGATGGTTCAGAAGGTGAACTTCAGAGAGTGGTTGTCACAAAGAGTAAGAACCCTACATTACATCTGCAGGCCCGAAAGTCTATATGGGGAGACTTGTGGCCTTTCTGA

Protein Analysis

509

Amino Acids

58.08

Weight (kDa)

9.03

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rsm22 PF09243 112 - 364 5.6e-49 Mitochondrial small ribosomal subunit Rsm22
Methyltransf_23 PF13489 132 - 236 3.4e-06 Methyltransferase domain
Rsm22 PF09243 442 - 507 2.3e-08 Mitochondrial small ribosomal subunit Rsm22
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1040
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 114
AclWI GGATC 5 cut(s) 711, 741, 790, 865, 1011
AcoI YGGCCR 2 cut(s) 494, 1106
AcsI RAATTY 2 cut(s) 1058, 1124
AcuI CTGAAG 3 cut(s) 172, 882, 1424
AfaI GTAC 2 cut(s) 720, 1371
AfeI AGCGCT 2 cut(s) 83, 980
AfiI CCNNNNNNNGG 6 cut(s) 139, 199, 730, 1026, 1040, 1115
AgsI TTSAA 5 cut(s) 764, 873, 1012, 1049, 1229
AjnI CCWGG 2 cut(s) 750, 766
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 4 cut(s) 17, 329, 1124, 1503
AlwI GGATC 5 cut(s) 711, 741, 790, 865, 1011
Ama87I CYCGRG 2 cut(s) 45, 1172
Aor51HI AGCGCT 2 cut(s) 83, 980
AoxI GGCC 4 cut(s) 494, 1106, 1488, 1517
ApeKI GCWGC 6 cut(s) 65, 84, 214, 238, 544, 1204
ApoI RAATTY 2 cut(s) 1058, 1124
AspLEI GCGC 3 cut(s) 84, 116, 981
AspS9I GGNCC 2 cut(s) 250, 1489
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 310, 625, 895, 1445
AvaI CYCGRG 2 cut(s) 45, 1172
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 407, 440
BalI TGGCCA 1 cut(s) 496
BanII GRGCYC 2 cut(s) 150, 467
Bbv12I GWGCWC 1 cut(s) 923
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 6 cut(s) 52, 71, 226, 250, 556, 1216
BccI CCATC 7 cut(s) 538, 700, 817, 848, 923, 1109, 1415
BceAI ACGGC 2 cut(s) 240, 825
BcgI CGANNNNNNTGC 3 cut(s) 29, 323, 357
BciT130I CCWGG 2 cut(s) 752, 768
BciVI GTATCC 1 cut(s) 408
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 17, 329, 1124, 1503
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 3 cut(s) 322, 714, 1484
BfoI RGCGCY 2 cut(s) 85, 982
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 1168
BisI GCNGC 8 cut(s) 66, 85, 112, 215, 239, 545, 1109, 1205
BlsI GCNGC 8 cut(s) 67, 86, 113, 216, 240, 546, 1110, 1206
Bme1390I CCNGG 3 cut(s) 20, 752, 768
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 2 cut(s) 45, 1172
BmgT120I GGNCC 2 cut(s) 250, 1489
BmiI GGNNCC 3 cut(s) 252, 528, 1101
BmrFI CCNGG 3 cut(s) 20, 752, 768
BmsI GCATC 1 cut(s) 792
BplI GAGNNNNNCTC 2 cut(s) 39, 71
BpmI CTGGAG 2 cut(s) 414, 596
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 380, 683
BpuMI CCSGG 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 1040
BsaI GGTCTC 2 cut(s) 17, 329
BsaJI CCNNGG 4 cut(s) 504, 1020, 1094, 1103
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 199, 730, 1026, 1040, 1115
Bse1I ACTGG 2 cut(s) 613, 1241
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 752, 768
BseDI CCNNGG 4 cut(s) 504, 1020, 1094, 1103
BseGI GGATG 8 cut(s) 148, 208, 530, 751, 828, 1288, 1402, 1426
BseLI CCNNNNNNNGG 6 cut(s) 139, 199, 730, 1026, 1040, 1115
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 161, 411, 812
BseNI ACTGG 2 cut(s) 613, 1241
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 6 cut(s) 52, 71, 226, 250, 556, 1216
BseYI CCCAGC 2 cut(s) 78, 551
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 496, 1108, 1490, 1519
BsiHKAI GWGCWC 1 cut(s) 923
BsiHKCI CYCGRG 2 cut(s) 45, 1172
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 6 cut(s) 139, 199, 730, 1026, 1040, 1115
BsmAI GTCTC 4 cut(s) 17, 329, 1124, 1503
BsmI GAATGC 3 cut(s) 366, 1007, 1073
BsnI GGCC 4 cut(s) 496, 1108, 1490, 1519
Bso31I GGTCTC 2 cut(s) 17, 329
BsoBI CYCGRG 2 cut(s) 45, 1172
Bsp1286I GDGCHC 4 cut(s) 150, 467, 481, 923
BspANI GGCC 4 cut(s) 496, 1108, 1490, 1519
BspCNI CTCAG 3 cut(s) 162, 412, 811
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 3 cut(s) 252, 528, 1101
BspMAI CTGCAG 1 cut(s) 1488
BspPI GGATC 5 cut(s) 711, 741, 790, 865, 1011
BspTNI GGTCTC 2 cut(s) 17, 329
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 2 cut(s) 613, 1241
BssECI CCNNGG 4 cut(s) 504, 1020, 1094, 1103
BssT1I CCWWGG 3 cut(s) 504, 1020, 1103
Bst2UI CCWGG 2 cut(s) 752, 768
Bst6I CTCTTC 2 cut(s) 152, 1299
BstBAI YACGTR 1 cut(s) 1040
BstC8I GCNNGC 7 cut(s) 366, 457, 549, 1005, 1202, 1209, 1488
BstDEI CTNAG 3 cut(s) 170, 420, 798
BstDSI CCRYGG 1 cut(s) 1094
BstF5I GGATG 8 cut(s) 148, 208, 530, 751, 828, 1288, 1402, 1426
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 2 cut(s) 85, 982
BstHHI GCGC 3 cut(s) 84, 116, 981
BstMAI GTCTC 4 cut(s) 17, 329, 1124, 1503
BstMWI GCNNNNNNNGC 5 cut(s) 111, 145, 350, 476, 553
BstNI CCWGG 2 cut(s) 752, 768
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 3 cut(s) 18, 750, 766
BstSFI CTRYAG 3 cut(s) 322, 714, 1484
BstSLI GKGCMC 1 cut(s) 481
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 6 cut(s) 52, 71, 226, 250, 556, 1216
BstX2I RGATCY 4 cut(s) 733, 782, 857, 1168
BstYI RGATCY 4 cut(s) 733, 782, 857, 1168
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 496, 1108, 1490, 1519
BtgI CCRYGG 1 cut(s) 1094
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 8 cut(s) 148, 208, 530, 751, 828, 1288, 1402, 1426
Cac8I GCNNGC 7 cut(s) 366, 457, 549, 1005, 1202, 1209, 1488
CciI TCATGA 1 cut(s) 925
CfoI GCGC 3 cut(s) 84, 116, 981
Cfr13I GGNCC 2 cut(s) 250, 1489
Csp6I GTAC 2 cut(s) 719, 1370
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 5 cut(s) 154, 653, 926, 1148, 1325
CviQI GTAC 2 cut(s) 719, 1370
DdeI CTNAG 3 cut(s) 170, 420, 798
DraI TTTAAA 1 cut(s) 1137
EaeI YGGCCR 2 cut(s) 494, 1106
Eam1104I CTCTTC 2 cut(s) 152, 1299
EarI CTCTTC 2 cut(s) 152, 1299
EciI GGCGGA 2 cut(s) 92, 98
Eco130I CCWWGG 3 cut(s) 504, 1020, 1103
Eco24I GRGCYC 2 cut(s) 150, 467
Eco31I GGTCTC 2 cut(s) 17, 329
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 250
Eco47III AGCGCT 2 cut(s) 83, 980
Eco57I CTGAAG 3 cut(s) 172, 882, 1424
Eco88I CYCGRG 2 cut(s) 45, 1172
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 750, 766
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 3 cut(s) 504, 1020, 1103
EcoT38I GRGCYC 2 cut(s) 150, 467
ErhI CCWWGG 3 cut(s) 504, 1020, 1103
FaeI CATG 5 cut(s) 157, 656, 929, 1151, 1328
FalI AAGNNNNNCTT 2 cut(s) 1422, 1454
FatI CATG 5 cut(s) 153, 652, 925, 1147, 1324
FauI CCCGC 1 cut(s) 540
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 8 cut(s) 66, 85, 112, 215, 239, 545, 1109, 1205
FokI GGATG 8 cut(s) 155, 215, 517, 758, 835, 1295, 1409, 1433
FriOI GRGCYC 2 cut(s) 150, 467
Fsp4HI GCNGC 8 cut(s) 66, 85, 112, 215, 239, 545, 1109, 1205
FspBI CTAG 1 cut(s) 786
GlaI GCGC 3 cut(s) 83, 115, 980
GluI GCNGC 8 cut(s) 66, 85, 112, 215, 239, 545, 1109, 1205
GsaI CCCAGC 2 cut(s) 82, 555
GsuI CTGGAG 2 cut(s) 414, 596
HaeII RGCGCY 2 cut(s) 85, 982
HaeIII GGCC 4 cut(s) 496, 1108, 1490, 1519
HapII CCGG 1 cut(s) 20
HhaI GCGC 3 cut(s) 84, 116, 981
Hin1II CATG 5 cut(s) 157, 656, 929, 1151, 1328
Hin6I GCGC 3 cut(s) 82, 114, 979
HinP1I GCGC 3 cut(s) 82, 114, 979
HincII GTYRAC 2 cut(s) 268, 1246
HindII GTYRAC 2 cut(s) 268, 1246
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 7 cut(s) 10, 182, 315, 886, 1159, 1190, 1253
HpaI GTTAAC 1 cut(s) 1246
HpaII CCGG 1 cut(s) 20
HphI GGTGA 4 cut(s) 310, 625, 895, 1445
Hpy166II GTNNAC 4 cut(s) 208, 268, 1246, 1436
Hpy188III TCNNGA 6 cut(s) 292, 357, 926, 1163, 1172, 1174
Hpy8I GTNNAC 4 cut(s) 208, 268, 1246, 1436
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 157, 196, 405, 1368, 1424
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 5 cut(s) 544, 902, 1007, 1073, 1486
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 145, 350, 476, 553
HpyF3I CTNAG 3 cut(s) 170, 420, 798
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 5 cut(s) 157, 656, 929, 1151, 1328
HspAI GCGC 3 cut(s) 82, 114, 979
KspAI GTTAAC 1 cut(s) 1246
LmnI GCTCC 8 cut(s) 21, 42, 65, 294, 452, 526, 919, 1141
Lsp1109I GCAGC 6 cut(s) 52, 71, 226, 250, 556, 1216
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 786
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 5 cut(s) 220, 383, 883, 1387, 1453
MbiI CCGCTC 1 cut(s) 60
MboII GAAGA 9 cut(s) 169, 298, 589, 875, 1061, 1178, 1241, 1316, 1322
MflI RGATCY 4 cut(s) 733, 782, 857, 1168
MhlI GDGCHC 4 cut(s) 150, 467, 481, 923
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 6 cut(s) 517, 663, 708, 1058, 1124, 1194
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 5 cut(s) 4, 309, 880, 1168, 1199
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 496
MseI TTAA 3 cut(s) 516, 1136, 1245
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 496
MspA1I CMGCKG 3 cut(s) 65, 547, 943
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 20, 752, 768
Mva1269I GAATGC 3 cut(s) 366, 1007, 1073
MvaI CCWGG 2 cut(s) 752, 768
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 111, 145, 350, 476, 553
NciI CCSGG 1 cut(s) 20
NlaIII CATG 5 cut(s) 157, 656, 929, 1151, 1328
NlaIV GGNNCC 3 cut(s) 252, 528, 1101
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 3 cut(s) 383, 883, 1453
NspI RCATGY 1 cut(s) 1151
PaeR7I CTCGAG 1 cut(s) 1172
PagI TCATGA 1 cut(s) 925
PctI GAATGC 3 cut(s) 366, 1007, 1073
PfeI GAWTC 2 cut(s) 182, 1253
PflFI GACNNNGTC 1 cut(s) 936
PflMI CCANNNNNTGG 1 cut(s) 1040
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 8 cut(s) 67, 86, 113, 216, 240, 546, 1110, 1206
PleI GAGTC 5 cut(s) 4, 309, 880, 1167, 1198
PpsI GAGTC 5 cut(s) 4, 309, 880, 1167, 1198
Ppu21I YACGTR 1 cut(s) 1040
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 750, 766
PspFI CCCAGC 2 cut(s) 78, 551
PspGI CCWGG 2 cut(s) 750, 766
PspN4I GGNNCC 3 cut(s) 252, 528, 1101
PspPI GGNCC 2 cut(s) 250, 1489
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 1488
PsuI RGATCY 4 cut(s) 733, 782, 857, 1168
PsyI GACNNNGTC 1 cut(s) 936
RsaI GTAC 2 cut(s) 720, 1371
RsaNI GTAC 2 cut(s) 719, 1370
RseI CAYNNNNRTG 1 cut(s) 600
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 3 cut(s) 516, 1136, 1245
SatI GCNGC 8 cut(s) 66, 85, 112, 215, 239, 545, 1109, 1205
Sau96I GGNCC 2 cut(s) 250, 1489
SchI GAGTC 5 cut(s) 4, 309, 880, 1168, 1199
ScrFI CCNGG 3 cut(s) 20, 752, 768
SduI GDGCHC 4 cut(s) 150, 467, 481, 923
SfaNI GCATC 1 cut(s) 792
SfcI CTRYAG 3 cut(s) 322, 714, 1484
Sfr274I CTCGAG 1 cut(s) 1172
SinI GGWCC 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 1172
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 3 cut(s) 395, 698, 1172
SmoI CTYRAG 3 cut(s) 395, 698, 1172
Sse9I AATT 6 cut(s) 517, 663, 708, 1058, 1124, 1194
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 18, 750, 766
StyI CCWWGG 3 cut(s) 504, 1020, 1103
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 4 cut(s) 267, 706, 1173, 1405
TasI AATT 6 cut(s) 517, 663, 708, 1058, 1124, 1194
TauI GCSGC 2 cut(s) 114, 1111
TfiI GAWTC 2 cut(s) 182, 1253
Tru1I TTAA 3 cut(s) 516, 1136, 1245
Tru9I TTAA 3 cut(s) 516, 1136, 1245
TseFI GTSAC 3 cut(s) 383, 883, 1453
TseI GCWGC 6 cut(s) 65, 84, 214, 238, 544, 1204
Tsp45I GTSAC 3 cut(s) 383, 883, 1453
TspDTI ATGAA 5 cut(s) 170, 584, 1136, 1299, 1329
TspGWI ACGGA 2 cut(s) 906, 1171
Tth111I GACNNNGTC 1 cut(s) 936
Van91I CCANNNNNTGG 1 cut(s) 1040
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 2 cut(s) 1058, 1124
XceI RCATGY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 1101
XhoI CTCGAG 1 cut(s) 1172
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.