Rh7CG235500

Methyltransferase-like protein 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005103
Physical Location & Seq
Reverse (-)
22017802 .. 22019050
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG235500.1

Sequence Viewer

Length: 258 bp
ATGGTTCAGAGGCAGAGAAAGCTCGTTGAGGACCCTTTGCAGTATGTGGACCAGTCACAGAGGTGGAAGATCAAGAGCTCTTTTGGAGATATTGGCCTTACTTATATAGACGATGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTCTCTGCTTGTCATAGAGTACTCAAGGAGGTTCGTACAAGGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGAGTTCAGCTTTCTAG

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

9.3

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rsm22 PF09243 39 - 84 1.2e-08 Mitochondrial small ribosomal subunit Rsm22
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 174, 190
AjnI CCWGG 1 cut(s) 199
AleI CACNNNNGTG 1 cut(s) 61
AluBI AGCT 4 cut(s) 22, 78, 149, 251
AluI AGCT 4 cut(s) 22, 78, 149, 251
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 31, 49
AvaII GGWCC 2 cut(s) 31, 49
BanII GRGCYC 1 cut(s) 80
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 2 cut(s) 31, 49
BmgT120I GGNCC 2 cut(s) 31, 49
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 69
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 52
BssMI GATC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 147, 238
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 19, 131
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 147, 238
Cfr13I GGNCC 2 cut(s) 31, 49
Csp6I GTAC 2 cut(s) 173, 189
CviJI RGCY 6 cut(s) 22, 78, 96, 149, 196, 251
CviKI_1 RGCY 6 cut(s) 22, 78, 96, 149, 196, 251
CviQI GTAC 2 cut(s) 173, 189
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 31, 49
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 80
FaiI YATR 5 cut(s) 45, 105, 107, 129, 168
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 256
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 73, 138
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 131
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 7 cut(s) 65, 151, 159, 186, 213, 222, 225
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 54
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 79, 145
MhlI GDGCHC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 3, 22, 54, 175
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 19, 131
NdeII GATC 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 61
PctI GAATGC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 31, 49
PspPPI RGGWCCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 174, 190
RsaNI GTAC 2 cut(s) 173, 189
RseI CAYNNNNRTG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 80
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 31, 49
ScaI AGTACT 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 80
SetI ASST 7 cut(s) 24, 65, 80, 151, 186, 205, 253
SinI GGWCC 2 cut(s) 31, 49
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SspMI CTAG 1 cut(s) 256
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 199
TatI WGTACW 1 cut(s) 172
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 31, 49
XspI CTAG 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.