AT1G64690

Protein BRANCHLESS TRICHOME

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009538
Physical Location & Seq
Forward (+)
24037475 .. 24039177
1703 bp
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UTR
Exon/CDS
Intron
AT1G64690.2

Sequence Viewer

Length: 822 bp
ATGAAGGATATGAAGATGCAGAGCAGCCCTGAAACGATGATGACCAGAATCCCCACTCCAGATCCTCACAGTACCGGTGTACGAGAAGATGCAATGGACTCAGTCTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCATCAACACCAACGCAAGGCATTTATTTGGGATCTGAATTTCATAAAGGTGTTCATGGAATCTGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAGAAAAGCTCGAAGACGGGCAGAGCTGATGATCAAGAAGCTGGCTAAAGATGTGGAGGAGGAGAGAATGGCTAGAGAAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTCTGAGAAGTCAGAGATGGTTCGGATGAAACGAGATCTTGAAGAAGAGAGACAGATGCACAGGTTGGCAGAGGTTTTGAGAGAAGAGAGAGTTCAGATGAAGCTGATGGATGCAAGGCTTTTCTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAATAGGATGATGAAACCTAAGATATTGGAGAGAGCGTGTAGCTCACCGGCTAGGAGGAGGTGCGAGAATCCGCAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAGATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTCAAAATTCTGCTCAGACAAAAGACCACCCCAAGATGTACTCCTCTTCTCTCCTCTCCTCCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

32.6

Weight (kDa)

9.48

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 362, 382, 653
AclWI GGATC 2 cut(s) 56, 201
AcsI RAATTY 2 cut(s) 199, 759
AfaI GTAC 3 cut(s) 73, 81, 793
AfiI CCNNNNNNNGG 1 cut(s) 178
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 262, 391, 443, 729
AjnI CCWGG 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 159, 445
AlwI GGATC 2 cut(s) 56, 201
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 2 cut(s) 199, 759
AsiGI ACCGGT 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 412, 502
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 159, 445
BfaI CTAG 3 cut(s) 230, 354, 633
BglII AGATCT 1 cut(s) 436
BisI GCNGC 2 cut(s) 25, 383
BlsI GCNGC 2 cut(s) 26, 384
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 6 cut(s) 6, 79, 172, 360, 447, 502
BpiI GAAGAC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 2 cut(s) 42, 755
BpuEI CTTGAG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 2 cut(s) 74, 628
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 432, 517, 594
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 4 cut(s) 114, 164, 396, 781
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 9 cut(s) 353, 356, 380, 545, 652, 786, 796, 801, 804
BseXI GCAGC 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 2 cut(s) 75, 629
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 159, 445
Bsp143I GATC 6 cut(s) 61, 193, 249, 312, 436, 704
BspACI CCGC 3 cut(s) 362, 382, 653
BspCNI CTCAG 4 cut(s) 113, 163, 397, 780
BspPI GGATC 2 cut(s) 56, 201
BspQI GCTCTTC 2 cut(s) 151, 392
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 74, 628
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 2 cut(s) 74, 628
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 6 cut(s) 61, 193, 249, 312, 436, 704
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 5 cut(s) 151, 392, 441, 480, 804
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 5 cut(s) 100, 150, 405, 600, 767
BstF5I GGATG 3 cut(s) 432, 517, 594
BstKTI GATC 6 cut(s) 64, 196, 252, 315, 439, 707
BstMAI GTCTC 2 cut(s) 159, 445
BstMBI GATC 6 cut(s) 61, 193, 249, 312, 436, 704
BstMWI GCNNNNNNNGC 2 cut(s) 359, 379
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 3 cut(s) 61, 193, 436
BstYI RGATCY 3 cut(s) 61, 193, 436
BtsCI GGATG 3 cut(s) 432, 517, 594
Cac8I GCNNGC 1 cut(s) 324
Cfr10I RCCGGY 2 cut(s) 74, 628
Csp6I GTAC 3 cut(s) 72, 80, 792
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 1 cut(s) 217
CviQI GTAC 3 cut(s) 72, 80, 792
DdeI CTNAG 5 cut(s) 100, 150, 405, 600, 767
DpnI GATC 6 cut(s) 63, 195, 251, 314, 438, 706
DpnII GATC 6 cut(s) 61, 193, 249, 312, 436, 704
Eam1104I CTCTTC 5 cut(s) 151, 392, 441, 480, 804
EarI CTCTTC 5 cut(s) 151, 392, 441, 480, 804
EcoRII CCWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 220
FaiI YATR 6 cut(s) 11, 126, 136, 206, 218, 279
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 25, 383
FokI GGATG 3 cut(s) 439, 524, 601
Fsp4HI GCNGC 2 cut(s) 25, 383
FspBI CTAG 3 cut(s) 230, 354, 633
GluI GCNGC 2 cut(s) 25, 383
GsuI CTGGAG 2 cut(s) 42, 755
HapII CCGG 2 cut(s) 75, 629
Hin1II CATG 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 5 cut(s) 48, 98, 221, 649, 669
HpaII CCGG 2 cut(s) 75, 629
HphI GGTGA 1 cut(s) 618
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 8 cut(s) 198, 226, 406, 415, 426, 498, 544, 770
Hpy188III TCNNGA 4 cut(s) 59, 242, 316, 440
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 6 cut(s) 19, 92, 108, 373, 460, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 379
HpyF3I CTNAG 5 cut(s) 100, 150, 405, 600, 767
Hsp92II CATG 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 6 cut(s) 61, 193, 249, 312, 436, 704
LguI GCTCTTC 2 cut(s) 151, 392
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 6 cut(s) 6, 79, 172, 360, 447, 502
MaeI CTAG 3 cut(s) 230, 354, 633
MalI GATC 6 cut(s) 63, 195, 251, 314, 438, 706
MboI GATC 6 cut(s) 61, 193, 249, 312, 436, 704
MboII GAAGA 9 cut(s) 25, 98, 138, 306, 379, 455, 458, 497, 791
MflI RGATCY 3 cut(s) 61, 193, 436
MluCI AATT 4 cut(s) 199, 257, 545, 759
MlyI GAGTC 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 2 cut(s) 75, 629
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 359, 379
NdeII GATC 6 cut(s) 61, 193, 249, 312, 436, 704
NlaIII CATG 1 cut(s) 220
PciSI GCTCTTC 2 cut(s) 151, 392
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PfeI GAWTC 4 cut(s) 48, 221, 649, 669
PflFI GACNNNGTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 2 cut(s) 26, 384
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PsuI RGATCY 3 cut(s) 61, 193, 436
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 3 cut(s) 73, 81, 793
RsaNI GTAC 3 cut(s) 72, 80, 792
RseI CAYNNNNRTG 1 cut(s) 209
SapI GCTCTTC 2 cut(s) 151, 392
SatI GCNGC 2 cut(s) 25, 383
Sau3AI GATC 6 cut(s) 61, 193, 249, 312, 436, 704
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 115
SfaNI GCATC 6 cut(s) 6, 79, 172, 360, 447, 502
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 4 cut(s) 199, 257, 545, 759
SsiI CCGC 3 cut(s) 362, 382, 653
SspMI CTAG 3 cut(s) 230, 354, 633
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 292
TasI AATT 4 cut(s) 199, 257, 545, 759
TatI WGTACW 1 cut(s) 791
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 4 cut(s) 48, 221, 649, 669
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 8 cut(s) 17, 26, 141, 193, 205, 443, 515, 608
TspGWI ACGGA 1 cut(s) 666
Tth111I GACNNNGTC 1 cut(s) 101
XapI RAATTY 2 cut(s) 199, 759
XspI CTAG 3 cut(s) 230, 354, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.