Prupe.5G131500_v2.0.a1

Protein BRANCHLESS TRICHOME

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009538
Physical Location & Seq
Forward (+)
12668485 .. 12670120
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G131500.1

Sequence Viewer

Length: 1128 bp
ATGGAGGAGATGATGATGAGGACCAGTTCTGCTACTAGTAGCCCAGAAACTAGCAGAAATGAAACCATTAATTCTATAGAGCCCATCACCACCTCCACTTGCCCAAGCTGGAAACTTTATGAAAACCCATTTTATAATTCTCATCTCCGCCATCAAAATCAACCCCAACAACAACAGCAGCAATGCCAAAGTAGCAGCAGTAACAAGCAACAAGTTCATCATTGCCTGCACCTCCCTATCTCTGCTCGCAAGCTTGCTGCCACTTTCTGGGATCTAACCTTCTTCAAGCCAGTCATGGAGTCTGAGATGGATTACACACGAGCCCAGATCATAGAATTGAAAGCTGAGCTCGAATATGAACGCAAGGCACGTAAGAAGTTGGAGTCTTCAAACAAGAGGCTGGCCAAAGAGTTGGGTGAGGAGAGAAGGGGAAGAGAAGCGATTGAGAGGGTGTGTGAAGAGCTTGCCAGAGAGATTTCATTTGGGAAATCAGAGATTAGTAGGATGAAGAAAGAGATAGAGGAGGAGAGAAAGATGCTTAGAATGGCTGAGGTGCTGAGAGAAGAGAGAGTTCAGATGAAGCTCGCCGAGGCGAGGATTCTATTTGAAGAGAAGCTGTTAGAGTTGGAGGGTTGTAAACAAATGCAGAGCACTGAGAATTCACATTTCAAGATCAAAGACAAGAGTGAGGATGTTAATGCTGCAAGTTTTTCAGGAAAGTCAGCTAGCAATGATAAAAACATTGGTGTTGATTGTTCAAGAGACTCAATGAGTTTGGTGGTTTTGGGTGAAAAGTCTTCTGCTTTTTCAGGTGATCATAATAATGACTATGTTTCCAGTGTGTCTGCTACAACTTCAAGGTCAGTGCTTTTGGGTGAGAAGGCAGCTTGCAGTGACAACAGCGGTGGTTTTTCATCAATGGCAATTCAGAAAAGAGCCTCACCAGAACCAGAAAATCCTCACATAAAGAGAGGGATCAAAGGGTTTGTTGAATTCCCAAGAGTGGTCAGAGCAATTGGATCCAAAAGCAGGCATTGGGGTACAAAGCTGGAATGTCAAAAGGCTCAGCTCAGAATTCTGCTGAAGCAAAAGAGCCCCATCAGATCCAATAGTTTCATTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

42.71

Weight (kDa)

8.97

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 2 cut(s) 148, 903
AclWI GGATC 5 cut(s) 279, 983, 1014, 1027, 1098
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 3 cut(s) 658, 992, 1074
AcuI CTGAAG 1 cut(s) 1103
AfaI GTAC 1 cut(s) 1042
AfiI CCNNNNNNNGG 4 cut(s) 267, 594, 1003, 1029
AgsI TTSAA 8 cut(s) 286, 340, 390, 608, 670, 759, 858, 992
AhlI ACTAGT 1 cut(s) 35
Alw21I GWGCWC 2 cut(s) 351, 653
Alw26I GTCTC 1 cut(s) 756
AlwI GGATC 5 cut(s) 279, 983, 1014, 1027, 1098
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 5 cut(s) 178, 195, 257, 701, 884
ApoI RAATTY 3 cut(s) 658, 992, 1074
AseI ATTAAT 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 6 cut(s) 79, 428, 800, 824, 887, 933
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 404
BamHI GGATCC 1 cut(s) 1019
BanII GRGCYC 4 cut(s) 84, 325, 351, 1097
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 2 cut(s) 378, 789
Bbv12I GWGCWC 2 cut(s) 351, 653
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 5 cut(s) 190, 207, 244, 688, 896
BccI CCATC 4 cut(s) 92, 159, 301, 1106
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 756
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 3 cut(s) 36, 51, 726
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 5 cut(s) 179, 196, 258, 702, 885
BlpI GCTNAGC 2 cut(s) 345, 1065
BlsI GCNGC 5 cut(s) 180, 197, 259, 703, 886
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 1021
BmsI GCATC 1 cut(s) 525
BmtI GCTAGC 1 cut(s) 729
BpiI GAAGAC 2 cut(s) 378, 789
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 2 cut(s) 345, 1065
BsaAI YACGTR 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 594, 1003, 1029
Bse1I ACTGG 3 cut(s) 24, 290, 837
Bse3DI GCAATG 3 cut(s) 188, 220, 736
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 2 cut(s) 510, 697
BseLI CCNNNNNNNGG 4 cut(s) 267, 594, 1003, 1029
BseMI GCAATG 3 cut(s) 188, 220, 736
BseMII CTCAG 7 cut(s) 294, 336, 540, 548, 645, 1079, 1084
BseNI ACTGG 3 cut(s) 24, 290, 837
BseRI GAGGAG 4 cut(s) 20, 434, 536, 539
BseXI GCAGC 5 cut(s) 190, 207, 244, 688, 896
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 351, 653
BslI CCNNNNNNNGG 4 cut(s) 267, 594, 1003, 1029
BsmAI GTCTC 1 cut(s) 756
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 5 cut(s) 84, 325, 351, 653, 1097
Bsp143I GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
Bsp1720I GCTNAGC 2 cut(s) 345, 1065
BspACI CCGC 2 cut(s) 148, 903
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 7 cut(s) 295, 337, 541, 549, 646, 1078, 1083
BspLI GGNNCC 1 cut(s) 1021
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 5 cut(s) 279, 983, 1014, 1027, 1098
BspQI GCTCTTC 1 cut(s) 453
BsrDI GCAATG 3 cut(s) 188, 220, 736
BsrI ACTGG 3 cut(s) 24, 290, 837
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst6I CTCTTC 4 cut(s) 427, 453, 558, 603
BstBAI YACGTR 1 cut(s) 371
BstDEI CTNAG 8 cut(s) 303, 345, 539, 549, 557, 654, 1065, 1070
BstF5I GGATG 2 cut(s) 510, 697
BstKTI GATC 7 cut(s) 274, 330, 675, 817, 978, 1022, 1106
BstMAI GTCTC 1 cut(s) 756
BstMBI GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 190, 207, 244, 688, 896
BstV2I GAAGAC 2 cut(s) 378, 789
BstX2I RGATCY 3 cut(s) 271, 1019, 1103
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 3 cut(s) 271, 1019, 1103
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 510, 697
BtsI GCAGTG 1 cut(s) 898
BtsIMutI CAGTG 4 cut(s) 651, 844, 870, 898
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 1041
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 1041
DdeI CTNAG 8 cut(s) 303, 345, 539, 549, 557, 654, 1065, 1070
DpnI GATC 7 cut(s) 273, 329, 674, 816, 977, 1021, 1105
DpnII GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 4 cut(s) 427, 453, 558, 603
EarI CTCTTC 4 cut(s) 427, 453, 558, 603
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 4 cut(s) 84, 325, 351, 1097
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 1103
EcoICRI GAGCTC 1 cut(s) 349
EcoRI GAATTC 3 cut(s) 658, 992, 1074
EcoT38I GRGCYC 4 cut(s) 84, 325, 351, 1097
FaeI CATG 1 cut(s) 298
FaiI YATR 9 cut(s) 77, 120, 135, 296, 332, 357, 819, 831, 965
FatI CATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 5 cut(s) 179, 196, 258, 702, 885
FokI GGATG 2 cut(s) 517, 704
FriOI GRGCYC 4 cut(s) 84, 325, 351, 1097
Fsp4HI GCNGC 5 cut(s) 179, 196, 258, 702, 885
FspBI CTAG 3 cut(s) 36, 51, 726
GluI GCNGC 5 cut(s) 179, 196, 258, 702, 885
HaeIII GGCC 1 cut(s) 404
Hin1II CATG 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 4 cut(s) 299, 383, 598, 764
HphI GGTGA 6 cut(s) 79, 428, 800, 824, 887, 933
Hpy166II GTNNAC 1 cut(s) 638
Hpy188I TCNGA 7 cut(s) 304, 493, 576, 930, 1010, 1073, 1103
Hpy188III TCNNGA 3 cut(s) 670, 714, 759
Hpy8I GTNNAC 1 cut(s) 638
HpyAV CCTTC 3 cut(s) 289, 420, 874
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 229, 646, 704, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 8 cut(s) 303, 345, 539, 549, 557, 654, 1065, 1070
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
LguI GCTCTTC 1 cut(s) 453
Lsp1109I GCAGC 5 cut(s) 190, 207, 244, 688, 896
LweI GCATC 1 cut(s) 525
MaeI CTAG 3 cut(s) 36, 51, 726
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 200, 893
MalI GATC 7 cut(s) 273, 329, 674, 816, 977, 1021, 1105
MboI GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
MboII GAAGA 8 cut(s) 274, 378, 444, 470, 520, 575, 620, 789
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 3 cut(s) 271, 1019, 1103
MhlI GDGCHC 5 cut(s) 84, 325, 351, 653, 1097
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 8 cut(s) 70, 136, 335, 658, 924, 992, 1014, 1074
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 308, 392, 758
MmeI TCCRAC 2 cut(s) 360, 606
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 2 cut(s) 69, 696
MslI CAYNNNNRTG 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 903
MunI CAATTG 1 cut(s) 1014
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 1021
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PfeI GAWTC 1 cut(s) 598
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 5 cut(s) 180, 197, 259, 703, 886
PleI GAGTC 3 cut(s) 307, 391, 758
PpsI GAGTC 3 cut(s) 307, 391, 758
Ppu21I YACGTR 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 69
PsiI TTATAA 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 1021
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 3 cut(s) 271, 1019, 1103
RsaI GTAC 1 cut(s) 1042
RsaNI GTAC 1 cut(s) 1041
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 2 cut(s) 69, 696
SatI GCNGC 5 cut(s) 179, 196, 258, 702, 885
Sau3AI GATC 7 cut(s) 271, 327, 672, 814, 975, 1019, 1103
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 3 cut(s) 308, 392, 758
SduI GDGCHC 5 cut(s) 84, 325, 351, 653, 1097
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 822
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 8 cut(s) 70, 136, 335, 658, 924, 992, 1014, 1074
SsiI CCGC 2 cut(s) 148, 903
SspMI CTAG 3 cut(s) 36, 51, 726
SstI GAGCTC 1 cut(s) 351
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 351
TasI AATT 8 cut(s) 70, 136, 335, 658, 924, 992, 1014, 1074
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 2 cut(s) 69, 696
Tru9I TTAA 2 cut(s) 69, 696
TscAI CASTG 4 cut(s) 658, 844, 870, 898
TseFI GTSAC 1 cut(s) 893
TseI GCWGC 5 cut(s) 178, 195, 257, 701, 884
Tsp45I GTSAC 1 cut(s) 893
TspDTI ATGAA 9 cut(s) 75, 135, 206, 372, 468, 521, 593, 903, 1105
TspRI CASTG 4 cut(s) 658, 844, 870, 898
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 21
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 3 cut(s) 658, 992, 1074
XspI CTAG 3 cut(s) 36, 51, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.