Rh7CG086600

Protein BRANCHLESS TRICHOME

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
6531132 .. 6532759
1628 bp
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UTR
Exon/CDS
Intron
Rh7CG086600.1

Sequence Viewer

Length: 543 bp
ATGAAGCTCTCTGAGGCCAAGTTTCTTTTTGAAGAGAAAGTATTTGAGTTGAGTTCCAAACCTATACGAAATGAGAAGTCTGCTGCTTGTGTTGACAATGATGACCCAATTTGTTCCAATGTGGTTAGGACTAATTCGAAGTCGGGGGCCTGCAGTGAAAATAGTGGTGGATTTTCGACAATGGCGATTCAGAGAAGGGCTTCACCGGAATCGGAGAATCCACACATAAAGAGAGGGATCAAGGGGTTTGTGGAATTTCCGAGAGTGGTTCGAGCAATTGGGTCCAAAAGTAGGCATTGGGGTACAAAGCTAGAGTGCCAGAAAGCTCAGCTGAGGATTCTACTGAAGCAAAAGAGCCCCATCAGATCCAATAGTCTCATTATCAAGAAAAGCCATAACATGATTGAAAACCATGAGCTTTGCCACCTTAGAAAAATGCTGCAATCATTCCTTACAGAGCAAAAGATAGCGGCTCTGATATGCATTACACCCTGGAAATGGAATCTAAGCACAAAAACAAGTCTAGCCTTTGAGGGTCCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.33

Weight (kDa)

9.75

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 470
AclWI GGATC 2 cut(s) 245, 360
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 291, 498
AgsI TTSAA 2 cut(s) 32, 407
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 5 cut(s) 7, 310, 326, 331, 418
AluI AGCT 5 cut(s) 7, 310, 326, 331, 418
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 2 cut(s) 245, 360
AoxI GGCC 2 cut(s) 15, 147
ApeKI GCWGC 2 cut(s) 83, 439
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 199
AspS9I GGNCC 3 cut(s) 147, 282, 536
AsuHPI GGTGA 1 cut(s) 195
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 282, 536
BanII GRGCYC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 70, 426
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 2 cut(s) 311, 524
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 3 cut(s) 84, 440, 471
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 85, 441, 472
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 2 cut(s) 282, 536
BmgT120I GGNCC 3 cut(s) 147, 282, 536
BmiI GGNNCC 3 cut(s) 148, 283, 537
BmrFI CCNGG 1 cut(s) 493
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 498
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 491
BseLI CCNNNNNNNGG 2 cut(s) 291, 498
BseMII CTCAG 2 cut(s) 323, 341
BseXI GCAGC 2 cut(s) 70, 426
BshFI GGCC 2 cut(s) 17, 149
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 291, 498
BsmAI GTCTC 1 cut(s) 380
BsnI GGCC 2 cut(s) 17, 149
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 237, 365
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 1 cut(s) 470
BspANI GGCC 2 cut(s) 17, 149
BspCNI CTCAG 3 cut(s) 4, 324, 340
BspLI GGNNCC 3 cut(s) 148, 283, 537
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 2 cut(s) 245, 360
BspT104I TTCGAA 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 237, 365
Bst2UI CCWGG 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 5 cut(s) 12, 327, 332, 428, 506
BstKTI GATC 2 cut(s) 240, 368
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 237, 365
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 70, 426
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 2 cut(s) 17, 149
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 147, 282, 536
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 400, 413
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 5 cut(s) 12, 327, 332, 428, 506
DpnI GATC 2 cut(s) 239, 367
DpnII GATC 2 cut(s) 237, 365
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 282, 536
Eco57I CTGAAG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 359
FaeI CATG 2 cut(s) 403, 416
FaiI YATR 7 cut(s) 65, 227, 396, 401, 414, 481, 541
FatI CATG 2 cut(s) 399, 412
Fnu4HI GCNGC 3 cut(s) 84, 440, 471
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 3 cut(s) 84, 440, 471
FspBI CTAG 2 cut(s) 311, 524
GluI GCNGC 3 cut(s) 84, 440, 471
HaeIII GGCC 2 cut(s) 17, 149
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 403, 416
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 5 cut(s) 187, 209, 217, 337, 502
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 6 cut(s) 13, 192, 214, 261, 365, 477
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 153, 442, 483
HpyF3I CTNAG 5 cut(s) 12, 327, 332, 428, 506
Hsp92II CATG 2 cut(s) 403, 416
Kzo9I GATC 2 cut(s) 237, 365
LpnPI CCDG 5 cut(s) 163, 219, 332, 478, 505
Lsp1109I GCAGC 2 cut(s) 70, 426
MaeI CTAG 2 cut(s) 311, 524
MalI GATC 2 cut(s) 239, 367
MboI GATC 2 cut(s) 237, 365
MboII GAAGA 1 cut(s) 44
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 4 cut(s) 108, 133, 254, 276
MnlI CCTC 4 cut(s) 7, 227, 327, 526
Mph1103I ATGCAT 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 199
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 493
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 493
NdeII GATC 2 cut(s) 237, 365
NlaIII CATG 2 cut(s) 403, 416
NlaIV GGNNCC 3 cut(s) 148, 283, 537
NsiI ATGCAT 1 cut(s) 485
NspV TTCGAA 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 199
PfeI GAWTC 5 cut(s) 187, 209, 217, 337, 502
PkrI GCNGC 3 cut(s) 85, 441, 472
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 3 cut(s) 148, 283, 537
PspPI GGNCC 3 cut(s) 147, 282, 536
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SatI GCNGC 3 cut(s) 84, 440, 471
Sau3AI GATC 2 cut(s) 237, 365
Sau96I GGNCC 3 cut(s) 147, 282, 536
ScrFI CCNGG 1 cut(s) 493
SduI GDGCHC 1 cut(s) 359
SetI ASST 7 cut(s) 9, 64, 312, 328, 333, 420, 429
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 2 cut(s) 282, 536
Sse9I AATT 4 cut(s) 108, 133, 254, 276
SsiI CCGC 1 cut(s) 470
SspMI CTAG 2 cut(s) 311, 524
StyD4I CCNGG 1 cut(s) 491
TaqI TCGA 3 cut(s) 137, 176, 271
TasI AATT 4 cut(s) 108, 133, 254, 276
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 5 cut(s) 187, 209, 217, 337, 502
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 83, 439
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 282, 536
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 2 cut(s) 311, 524
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.