Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009538

Physical Location & Seq

Genomic Coordinates Forward (+)

6400763 .. 6404519

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGAGAAGATGATGATGACTACCAGTAGCAGCCCAGAAACTAGCACAAACGAAACCACTACCACTTCAACTTTCCCAAGCTGGAAACTGTACGAAAACCCATTTTATAATTCTCAACCTCAACATCAAAACCACTCAGAAAAACAACCACAATGCCAAATTAACACCACCAAGAACCAACATTGCCTTCACCTCCCTATCTCTGCTCGAAAGCTCGCTGCTTCGTTCTGGGATCTCACATTTTTCAAACCCGTAATGGAGACTGAAATGGATTACACAAGAGCCCAGATCATGGAACTGAAAGCTGAGCTTGAATACGAGCGAAAGACGCGAAAGAAGTTGGAGGTGATCAACAAGAAGCTTGCCAAAGATTTGGGTGAGGAAAGGAGGGCGAGAGAAGCATTTGAGAATGTGTGTGAAGAACTAGCGAGAGAGATTTCAAGTCGAAATTCAGAGATTAATAGGATGAGGAAGGAAATGGATGAGGAGAGGAAGATGCTGAGAGTGGCTGAGGTGATTAGAGAAGAAAGAGTTCAGATGAAGCTCTCTGAGGCCAAGTTTCTATTTGAAGAGAAAGTATTTGAGTTGAGTTCCAAACCTATACGAACTGAGAAGTCTGCTGCTTATGTTGACAATGATGACCCAATTTGTTCCAATGTGGTTAGGACTAATTCGAAGTCGGGGGCCTGCAGTGAAAATAGTGGTGGATTTTCGACAATGGCGATTCAGAGAAGGGCTTCACCGGAATCGGAGAATCCACACATAAAGAGAGGGATCAAGGGGTTTGTGGAATTTCCGAGAGTGGTTCGAGCAATTGGGTCCAAAAGTAGGCATTGGGGTACAAAGCTAGAGTGCCAGAAAGCTCAGCTGAGGATTCTACTGAAGCAAAAGAGCCCCATCAGATCCAATAGTCTCATTATCAGTACATCGAATAAATGGAGAAGAAATGAGCTTAAAGGCAGAAGGGATGCAGAAATAAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

38.42

Weight (kDa)

9.47

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64690 AT1G64690 AT1G64690 AT1G64690
fragaria_vesca	FvH4_5g10770
malus_domestica	MD06G1120900.v1.1 MD14G1137500.v1.1
prunus_persica	Prupe.5G131500_v2.0.a1
pyrus_communis	pycom06g11220 pycom12486g00040 pycom14g11270
rosa_chinensis	RchiOBHm_Chr7g0187371
rosa_laevigata	RLG00000004789
rosa_multiflora	Rmu_sc0001758.1_g000003 Rmu_sc0023375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267520
rosa_rugosa	Rorug06G0481100
rosa_samantha	Rh7AG085500 Rh7BG086900 Rh7CG086600 Rh7DG087600
rosa_wichuraiana	Rw7G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccII	CGCG	1 cut(s)	334
AclWI	GGATC	3 cut(s)	243, 785, 900
AcsI	RAATTY	2 cut(s)	451, 794
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	3 cut(s)	95, 844, 928
AfiI	CCNNNNNNNGG	2 cut(s)	295, 831
AgsI	TTSAA	5 cut(s)	72, 250, 317, 444, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
Alw26I	GTCTC	2 cut(s)	257, 920
AlwI	GGATC	3 cut(s)	243, 785, 900
AoxI	GGCC	2 cut(s)	555, 687
ApeKI	GCWGC	3 cut(s)	33, 221, 623
ApoI	RAATTY	2 cut(s)	451, 794
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	2 cut(s)	534, 739
AspS9I	GGNCC	2 cut(s)	687, 822
AsuHPI	GGTGA	5 cut(s)	185, 361, 392, 529, 735
AsuII	TTCGAA	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	822
BanII	GRGCYC	2 cut(s)	289, 899
BbvCI	CCTCAGC	2 cut(s)	513, 872
BbvI	GCAGC	3 cut(s)	45, 208, 610
BccI	CCATC	1 cut(s)	908
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	257, 920
BfaI	CTAG	3 cut(s)	45, 428, 851
BfmI	CTRYAG	1 cut(s)	691
BisI	GCNGC	3 cut(s)	34, 222, 624
BlpI	GCTNAGC	2 cut(s)	309, 867
BlsI	GCNGC	3 cut(s)	35, 223, 625
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	2 cut(s)	687, 822
BmiI	GGNNCC	2 cut(s)	688, 823
BmsI	GCATC	2 cut(s)	489, 961
Bpu10I	CCTNAGC	2 cut(s)	513, 872
Bpu1102I	GCTNAGC	2 cut(s)	309, 867
Bpu14I	TTCGAA	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 831
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	184
BseGI	GGATG	3 cut(s)	474, 490, 976
BseLI	CCNNNNNNNGG	2 cut(s)	295, 831
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	8 cut(s)	153, 300, 494, 504, 543, 603, 863, 881
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	2 cut(s)	20, 503
BseXI	GCAGC	3 cut(s)	45, 208, 610
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	557, 689
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	295, 831
BsmAI	GTCTC	2 cut(s)	257, 920
BsnI	GGCC	2 cut(s)	557, 689
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	289, 899
Bsp143I	GATC	5 cut(s)	235, 291, 351, 777, 905
Bsp1720I	GCTNAGC	2 cut(s)	309, 867
BspANI	GGCC	2 cut(s)	557, 689
BspCNI	CTCAG	8 cut(s)	152, 301, 495, 505, 544, 604, 864, 880
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	688, 823
BspMAI	CTGCAG	1 cut(s)	695
BspPI	GGATC	3 cut(s)	243, 785, 900
BspT104I	TTCGAA	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	235, 291, 351, 777, 905
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	219, 366, 691
BstDEI	CTNAG	8 cut(s)	139, 309, 503, 513, 552, 612, 867, 872
BstF5I	GGATG	3 cut(s)	474, 490, 976
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	5 cut(s)	238, 294, 354, 780, 908
BstMAI	GTCTC	2 cut(s)	257, 920
BstMBI	GATC	5 cut(s)	235, 291, 351, 777, 905
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 401
BstSFI	CTRYAG	1 cut(s)	691
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	45, 208, 610
BstX2I	RGATCY	2 cut(s)	235, 905
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	235, 905
BsuRI	GGCC	2 cut(s)	557, 689
BtsCI	GGATG	3 cut(s)	474, 490, 976
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	219, 366, 691
Cfr13I	GGNCC	2 cut(s)	687, 822
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	94, 843, 927
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	3 cut(s)	94, 843, 927
DdeI	CTNAG	8 cut(s)	139, 309, 503, 513, 552, 612, 867, 872
DpnI	GATC	5 cut(s)	237, 293, 353, 779, 907
DpnII	GATC	5 cut(s)	235, 291, 351, 777, 905
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	289, 899
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	687
EcoT38I	GRGCYC	2 cut(s)	289, 899
FaeI	CATG	1 cut(s)	298
FaiI	YATR	5 cut(s)	111, 296, 605, 630, 767
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	34, 222, 624
FokI	GGATG	3 cut(s)	481, 497, 983
FriOI	GRGCYC	2 cut(s)	289, 899
Fsp4HI	GCNGC	3 cut(s)	34, 222, 624
FspBI	CTAG	3 cut(s)	45, 428, 851
GluI	GCNGC	3 cut(s)	34, 222, 624
HaeIII	GGCC	2 cut(s)	557, 689
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	727, 749, 757, 877
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	5 cut(s)	185, 361, 392, 529, 735
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	8 cut(s)	142, 457, 540, 553, 732, 754, 801, 905
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	4 cut(s)	200, 469, 729, 960
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	693, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 401
HpyF3I	CTNAG	8 cut(s)	139, 309, 503, 513, 552, 612, 867, 872
Hsp92II	CATG	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	235, 291, 351, 777, 905
LpnPI	CCDG	8 cut(s)	40, 51, 70, 217, 302, 703, 759, 872
Lsp1109I	GCAGC	3 cut(s)	45, 208, 610
LweI	GCATC	2 cut(s)	489, 961
MaeI	CTAG	3 cut(s)	45, 428, 851
MalI	GATC	5 cut(s)	237, 293, 353, 779, 907
MboI	GATC	5 cut(s)	235, 291, 351, 777, 905
MboII	GAAGA	6 cut(s)	22, 434, 508, 539, 584, 957
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	2 cut(s)	235, 905
MhlI	GDGCHC	2 cut(s)	289, 899
MluCI	AATT	7 cut(s)	112, 162, 451, 648, 673, 794, 816
MmeI	TCCRAC	1 cut(s)	324
MroXI	GAANNNNTTC	2 cut(s)	534, 739
MseI	TTAA	3 cut(s)	165, 462, 957
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	816
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	331, 401
NdeII	GATC	5 cut(s)	235, 291, 351, 777, 905
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	688, 823
NspV	TTCGAA	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	534, 739
PfeI	GAWTC	4 cut(s)	727, 749, 757, 877
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	35, 223, 625
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	688, 823
PspPI	GGNCC	2 cut(s)	687, 822
PstI	CTGCAG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	235, 905
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	3 cut(s)	95, 844, 928
RsaNI	GTAC	3 cut(s)	94, 843, 927
SaqAI	TTAA	3 cut(s)	165, 462, 957
SatI	GCNGC	3 cut(s)	34, 222, 624
Sau3AI	GATC	5 cut(s)	235, 291, 351, 777, 905
Sau96I	GGNCC	2 cut(s)	687, 822
SduI	GDGCHC	2 cut(s)	289, 899
SfaNI	GCATC	2 cut(s)	489, 961
SfcI	CTRYAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	822
Sse9I	AATT	7 cut(s)	112, 162, 451, 648, 673, 794, 816
SspMI	CTAG	3 cut(s)	45, 428, 851
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	6 cut(s)	211, 448, 677, 716, 811, 932
TasI	AATT	7 cut(s)	112, 162, 451, 648, 673, 794, 816
TatI	WGTACW	1 cut(s)	926
TfiI	GAWTC	4 cut(s)	727, 749, 757, 877
Tru1I	TTAA	3 cut(s)	165, 462, 957
Tru9I	TTAA	3 cut(s)	165, 462, 957
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	3 cut(s)	33, 221, 623
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	700
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	822
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	451, 794
XmnI	GAANNNNTTC	2 cut(s)	534, 739
XspI	CTAG	3 cut(s)	45, 428, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.