pycom14g11270

Protein BRANCHLESS TRICHOME

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009538
Physical Location & Seq
Forward (+)
14236161 .. 14237207
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g11270.1

Sequence Viewer

Length: 1005 bp
ATGTTCATGATGATGGGCACCAGTACTACTACTACTCCTAGCCCAGAAAATATCAGAAATATTGAAACCACCACCTCCACTTTCCCAACCTGGAAACTTTACGAAAACCCTTCATATAATTCTCATCAAAATCCACTCCCACGACAACAAAACCAGCAGCAGCAGTGCCGAAACTTTAGCAACAAGCAACAAGAAGTCCACCACTGCCTGCACCTCCCCATCTCCGCCCGCAAGCTTGCCGCTTCCTTCTGGGATCTCACCTTCTTCAAGCCGGCAATGGAGTCCGAGAGGGATTACACGCGAGCCCAGATCACCGAAATGAAAGCGAAGCTCAAATACGAGCGAAAAGCGCGCAAGAAGGTGGAGAGTTCAAACAAGATGCTGGCAAAAGAGTTGGGGGAGGAGAGAAGAGAGATTTCTTTCGGGAAGTCGGAGATCATTAGGAACAGGAAAGAGATCGAGGAGGAGAGGAAAATGCTTCGAATGGTGGAGATGCTGAGAGAGGAGAGGCTTCAGATGAAGCTCACCGAGGCGAGGCTTCTGTTCGAAGAGAAGGTGTTAGAACTGGAGGGGTGTAAACAAATGCTAAGCGCCGCAGAGAACTCACATTTCAAGACCAAACACAGGAGTGAGGACGCTAATGTTGCTAGTTTTAATAATTCGAGTGAAAAGTCTGGTGCTTTTAGTGGTGATCGAAACAATGACTCTGTTTCCAGTTTTTCGACTGCAACTTCAAGGGAAGTGATTTTGGGTGAGAAAGCAGCTTTTAGTGAAAACAGTGGAGGTTTTTCATCAATGGCGGTTCAGAAAAGATCCTCACCAGAACCAGAAAATCCTCACATAAGGAGAGGGATCAAAGGATTTGTTGAATTCCCAAGAGTTGTCAGAGCAATTGGATCAAAAAGTAGGCATTGGGGTACAAAGCTGGAATGCCAAAAAGCTCAGCTCAGAATTCTGATGAAGCAAAAGAGCCCCATTAGATCCAATAGTTTCATTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

38.55

Weight (kDa)

9.73

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 2 cut(s) 301, 352
AciI CCGC 5 cut(s) 225, 229, 240, 594, 800
AclWI GGATC 5 cut(s) 261, 807, 860, 904, 975
AcsI RAATTY 2 cut(s) 869, 951
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 2 cut(s) 25, 919
AfiI CCNNNNNNNGG 2 cut(s) 534, 624
AgsI TTSAA 6 cut(s) 65, 268, 372, 613, 735, 869
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 627
AluBI AGCT 7 cut(s) 235, 331, 523, 764, 925, 941, 946
AluI AGCT 7 cut(s) 235, 331, 523, 764, 925, 941, 946
AlwI GGATC 5 cut(s) 261, 807, 860, 904, 975
ApeKI GCWGC 3 cut(s) 157, 160, 761
ApoI RAATTY 2 cut(s) 869, 951
AspLEI GCGC 3 cut(s) 352, 354, 593
AsuHPI GGTGA 6 cut(s) 250, 304, 517, 701, 764, 810
AsuII TTCGAA 2 cut(s) 481, 546
BaeGI GKGCMC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 2 cut(s) 307, 974
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbvI GCAGC 3 cut(s) 169, 172, 773
BccI CCATC 2 cut(s) 7, 227
BciT130I CCWGG 1 cut(s) 91
BfaI CTAG 2 cut(s) 39, 648
BfoI RGCGCY 1 cut(s) 594
BisI GCNGC 5 cut(s) 158, 161, 240, 594, 762
BlpI GCTNAGC 2 cut(s) 587, 942
BlsI GCNGC 5 cut(s) 159, 162, 241, 595, 763
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 369, 483
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 2 cut(s) 587, 942
Bpu14I TTCGAA 2 cut(s) 481, 546
BsaJI CCNNGG 1 cut(s) 528
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 534, 624
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 3 cut(s) 21, 570, 714
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 534, 624
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 488, 956, 961
BseNI ACTGG 3 cut(s) 21, 570, 714
BsePI GCGCGC 1 cut(s) 350
BseRI GAGGAG 4 cut(s) 416, 476, 479, 518
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 3 cut(s) 169, 172, 773
BsgI GTGCAG 1 cut(s) 194
Bsh1236I CGCG 2 cut(s) 301, 352
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 534, 624
BsmI GAATGC 1 cut(s) 935
Bsp119I TTCGAA 2 cut(s) 481, 546
Bsp1286I GDGCHC 3 cut(s) 20, 307, 974
Bsp143I GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
Bsp1720I GCTNAGC 2 cut(s) 587, 942
BspACI CCGC 5 cut(s) 225, 229, 240, 594, 800
BspCNI CTCAG 3 cut(s) 489, 955, 960
BspFNI CGCG 2 cut(s) 301, 352
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 5 cut(s) 261, 807, 860, 904, 975
BspT104I TTCGAA 2 cut(s) 481, 546
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 3 cut(s) 21, 570, 714
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 528
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 2 cut(s) 403, 543
BstBI TTCGAA 2 cut(s) 481, 546
BstC8I GCNNGC 8 cut(s) 209, 229, 233, 237, 273, 303, 352, 384
BstDEI CTNAG 4 cut(s) 497, 587, 942, 947
BstFNI CGCG 2 cut(s) 301, 352
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 3 cut(s) 352, 354, 593
BstKTI GATC 9 cut(s) 256, 312, 438, 459, 694, 815, 855, 899, 983
BstMBI GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
BstMWI GCNNNNNNNGC 2 cut(s) 349, 644
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 2 cut(s) 301, 352
BstV1I GCAGC 3 cut(s) 169, 172, 773
BstX2I RGATCY 3 cut(s) 253, 812, 980
BstYI RGATCY 3 cut(s) 253, 812, 980
BtsI GCAGTG 2 cut(s) 170, 202
BtsIMutI CAGTG 3 cut(s) 170, 202, 784
Cac8I GCNNGC 8 cut(s) 209, 229, 233, 237, 273, 303, 352, 384
CciI TCATGA 1 cut(s) 6
CfoI GCGC 3 cut(s) 352, 354, 593
Cfr10I RCCGGY 1 cut(s) 271
CseI GACGC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 24, 918
CviAII CATG 1 cut(s) 7
CviQI GTAC 2 cut(s) 24, 918
DdeI CTNAG 4 cut(s) 497, 587, 942, 947
DpnI GATC 9 cut(s) 255, 311, 437, 458, 693, 814, 854, 898, 982
DpnII GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
Eam1104I CTCTTC 2 cut(s) 403, 543
EarI CTCTTC 2 cut(s) 403, 543
EciI GGCGGA 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 307, 974
Eco57I CTGAAG 1 cut(s) 497
EcoRI GAATTC 2 cut(s) 869, 951
EcoRII CCWGG 1 cut(s) 89
EcoT38I GRGCYC 2 cut(s) 307, 974
FaeI CATG 1 cut(s) 10
FaiI YATR 4 cut(s) 8, 115, 117, 842
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 5 cut(s) 158, 161, 240, 594, 762
FriOI GRGCYC 2 cut(s) 307, 974
Fsp4HI GCNGC 5 cut(s) 158, 161, 240, 594, 762
FspBI CTAG 2 cut(s) 39, 648
GlaI GCGC 3 cut(s) 351, 353, 592
GluI GCNGC 5 cut(s) 158, 161, 240, 594, 762
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 594
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 644
HhaI GCGC 3 cut(s) 352, 354, 593
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 3 cut(s) 350, 352, 591
HinP1I GCGC 3 cut(s) 350, 352, 591
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 281, 704
HpaII CCGG 1 cut(s) 272
HphI GGTGA 6 cut(s) 250, 304, 517, 701, 764, 810
Hpy166II GTNNAC 2 cut(s) 199, 578
Hpy188I TCNGA 8 cut(s) 56, 286, 433, 516, 807, 887, 950, 957
Hpy188III TCNNGA 3 cut(s) 7, 424, 613
Hpy8I GTNNAC 2 cut(s) 199, 578
HpyAV CCTTC 5 cut(s) 120, 256, 271, 352, 547
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 2 cut(s) 211, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 644
HpyF3I CTNAG 4 cut(s) 497, 587, 942, 947
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 3 cut(s) 350, 352, 591
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
Lsp1109I GCAGC 3 cut(s) 169, 172, 773
LweI GCATC 2 cut(s) 369, 483
MaeI CTAG 2 cut(s) 39, 648
MalI GATC 9 cut(s) 255, 311, 437, 458, 693, 814, 854, 898, 982
MboI GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
MboII GAAGA 3 cut(s) 256, 420, 560
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 3 cut(s) 253, 812, 980
MhlI GDGCHC 3 cut(s) 20, 307, 974
MluCI AATT 5 cut(s) 118, 658, 869, 891, 951
MlyI GAGTC 2 cut(s) 290, 698
MmeI TCCRAC 1 cut(s) 411
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 3 cut(s) 11, 317, 627
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 2 cut(s) 301, 352
MwoI GCNNNNNNNGC 2 cut(s) 349, 644
NaeI GCCGGC 1 cut(s) 273
NdeII GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 19
NspV TTCGAA 2 cut(s) 481, 546
OliI CACNNNNGTG 1 cut(s) 627
PagI TCATGA 1 cut(s) 6
PauI GCGCGC 1 cut(s) 350
PctI GAATGC 1 cut(s) 935
PdiI GCCGGC 1 cut(s) 273
PkrI GCNGC 5 cut(s) 159, 162, 241, 595, 763
PleI GAGTC 2 cut(s) 289, 698
PpsI GAGTC 2 cut(s) 289, 698
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 3 cut(s) 253, 812, 980
PteI GCGCGC 1 cut(s) 350
RsaI GTAC 2 cut(s) 25, 919
RsaNI GTAC 2 cut(s) 24, 918
RseI CAYNNNNRTG 3 cut(s) 11, 317, 627
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 5 cut(s) 158, 161, 240, 594, 762
Sau3AI GATC 9 cut(s) 253, 309, 435, 456, 691, 812, 852, 896, 980
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 290, 698
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 3 cut(s) 20, 307, 974
SfaNI GCATC 2 cut(s) 369, 483
SfuI TTCGAA 2 cut(s) 481, 546
SmiMI CAYNNNNRTG 3 cut(s) 11, 317, 627
Sse9I AATT 5 cut(s) 118, 658, 869, 891, 951
SsiI CCGC 5 cut(s) 225, 229, 240, 594, 800
SspI AATATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 39, 648
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 6 cut(s) 459, 481, 546, 662, 694, 722
TasI AATT 5 cut(s) 118, 658, 869, 891, 951
TatI WGTACW 1 cut(s) 23
TauI GCSGC 2 cut(s) 242, 596
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 3 cut(s) 170, 209, 784
TseI GCWGC 3 cut(s) 157, 160, 761
TspDTI ATGAA 6 cut(s) 102, 335, 533, 780, 974, 982
TspRI CASTG 3 cut(s) 170, 209, 784
XapI RAATTY 2 cut(s) 869, 951
XspI CTAG 2 cut(s) 39, 648
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.