Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009538

Physical Location & Seq

Genomic Coordinates Forward (+)

22468508 .. 22469554

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1137500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATGGGCACCAGTACTACTACTCCTCCTAGCCCAGAAAATATCAGAAATATTGAAACCACCACCTCCACTTTCCCAACCTGGAAACTTTACGAAAACCCTTCTTATAATTCTCATAAACTTCATCAAAATCCACTCCCACGACAACAAAACCAGCAGCAGCAGTGCCGAAACTTTAGCAACAAGCAACAAGAAGTCCACCACTGCCTGCACCTCCCCATCTCCGCCCGCAAGCTCGCCGCTTCCTTCTGGGATCTCACCTTCTTCGAGCCGGCAATGGAGTCCGAGATGGATTACACGCGAGCCCAGATCACCGAAATGAAGGCGAAGCTCAAATACGAGCGAAAAGCGCGCAAGAAGGTGGAGATTTCAAACAAGATGCTGGCAAAAGAGTTGGGGGAGGAGAGAAGGTTGAGAAAAGCGATAGAGAGGGTTTGCGAGGAGCTTGCCGGAGAGATTTCTTTCGGGAAGTCGGAGATCATTAGGATCAGGAAAGAGATCGAGGAGGAGAGGAAAATGCTTCGAATGGTGGAGATGCTGAGAGAGGAGAGGCTTCAGATGAAGCTCACCGAGGCGAGGCTTCTGTTCGAAGAGAAGGTGTTAGAACTGGAGGGGTGTAAACAAATGCTGAGCGCTGCAGAGAACTCACATTTCAAGATCAAACACAAGAGTGAGGACGCTAATGTTGCTAGTTTTAACAATTCGAGTGAAAAGTCTGGTGCTTTTAGCGGTGATCGAAACAATGACTCTGTTTCCAGTTTTTCTACTGCAACTTCAAGGGAAGTGCTTTTGGGTGAGAAAGCTGCTTTTAGTGAAAACAGTGGAGGTTTTTCATCAATGGCAGTTCAGAAAAGATCCTCACCAGAACCAGAAAATCCTCACATAAAGAGAGGGATCAAAGGATTTGTTGAATTCCCAAGAGTTGTCAGAGCAATTGGATCAAAAAGTAGGCATTGGGGTACAAAGCTGGAATGCCAAAAAGCTCAGCTCAGAATTCTGATGAAGCAAAAGAGCCCCATTAGATCCAATAGTTTCATTATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

40.05

Weight (kDa)

9.53

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64690 AT1G64690 AT1G64690 AT1G64690
fragaria_vesca	FvH4_5g10770
malus_domestica	MD06G1120900.v1.1 MD14G1137500.v1.1
prunus_persica	Prupe.5G131500_v2.0.a1
pyrus_communis	pycom06g11220 pycom12486g00040 pycom14g11270
rosa_chinensis	RchiOBHm_Chr7g0187371
rosa_laevigata	RLG00000004789
rosa_multiflora	Rmu_sc0001758.1_g000003 Rmu_sc0023375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267520
rosa_rugosa	Rorug06G0481100
rosa_samantha	Rh7AG085500 Rh7BG086900 Rh7CG086600 Rh7DG087600
rosa_wichuraiana	Rw7G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	2 cut(s)	301, 352
AciI	CCGC	4 cut(s)	225, 229, 240, 729
AclWI	GGATC	6 cut(s)	261, 494, 849, 902, 946, 1017
AcsI	RAATTY	2 cut(s)	911, 993
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	16, 961
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	1 cut(s)	576
AgsI	TTSAA	5 cut(s)	56, 372, 655, 777, 911
AjnI	CCWGG	1 cut(s)	80
AleI	CACNNNNGTG	1 cut(s)	669
AluBI	AGCT	8 cut(s)	235, 331, 445, 565, 803, 967, 983, 988
AluI	AGCT	8 cut(s)	235, 331, 445, 565, 803, 967, 983, 988
AlwI	GGATC	6 cut(s)	261, 494, 849, 902, 946, 1017
Aor51HI	AGCGCT	1 cut(s)	634
ApeKI	GCWGC	4 cut(s)	157, 160, 635, 803
ApoI	RAATTY	2 cut(s)	911, 993
AspLEI	GCGC	3 cut(s)	352, 354, 635
AsuHPI	GGTGA	6 cut(s)	250, 304, 559, 743, 806, 852
AsuII	TTCGAA	2 cut(s)	523, 588
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	307, 1016
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbvI	GCAGC	4 cut(s)	169, 172, 622, 790
BccI	CCATC	2 cut(s)	227, 283
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	82
BfaI	CTAG	2 cut(s)	30, 690
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	636
BisI	GCNGC	5 cut(s)	158, 161, 240, 636, 804
BlpI	GCTNAGC	2 cut(s)	629, 984
BlsI	GCNGC	5 cut(s)	159, 162, 241, 637, 805
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	369, 525
BpmI	CTGGAG	1 cut(s)	629
Bpu1102I	GCTNAGC	2 cut(s)	629, 984
Bpu14I	TTCGAA	2 cut(s)	523, 588
BsaJI	CCNNGG	1 cut(s)	570
BsaXI	ACNNNNNCTCC	6 cut(s)	7, 10, 37, 40, 395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	3 cut(s)	12, 612, 756
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	530, 620, 998, 1003
BseNI	ACTGG	3 cut(s)	12, 612, 756
BsePI	GCGCGC	1 cut(s)	350
BseRI	GAGGAG	6 cut(s)	15, 416, 455, 518, 521, 560
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	4 cut(s)	169, 172, 622, 790
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	2 cut(s)	301, 352
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	272, 450
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	977
Bsp119I	TTCGAA	2 cut(s)	523, 588
Bsp1286I	GDGCHC	3 cut(s)	11, 307, 1016
Bsp1720I	GCTNAGC	2 cut(s)	629, 984
BspACI	CCGC	4 cut(s)	225, 229, 240, 729
BspCNI	CTCAG	4 cut(s)	531, 621, 997, 1002
BspFNI	CGCG	2 cut(s)	301, 352
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	6 cut(s)	261, 494, 849, 902, 946, 1017
BspT104I	TTCGAA	2 cut(s)	523, 588
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	12, 612, 756
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	570
BssHII	GCGCGC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	1 cut(s)	585
BstBI	TTCGAA	2 cut(s)	523, 588
BstC8I	GCNNGC	9 cut(s)	209, 229, 233, 237, 273, 303, 352, 384, 447
BstDEI	CTNAG	4 cut(s)	539, 629, 984, 989
BstFNI	CGCG	2 cut(s)	301, 352
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	3 cut(s)	352, 354, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 686
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	301, 352
BstV1I	GCAGC	4 cut(s)	169, 172, 622, 790
BstX2I	RGATCY	3 cut(s)	253, 854, 1022
BstYI	RGATCY	3 cut(s)	253, 854, 1022
BtsI	GCAGTG	2 cut(s)	170, 202
BtsIMutI	CAGTG	3 cut(s)	170, 202, 826
Cac8I	GCNNGC	9 cut(s)	209, 229, 233, 237, 273, 303, 352, 384, 447
CfoI	GCGC	3 cut(s)	352, 354, 635
Cfr10I	RCCGGY	1 cut(s)	271
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	2 cut(s)	15, 960
CviQI	GTAC	2 cut(s)	15, 960
DdeI	CTNAG	4 cut(s)	539, 629, 984, 989
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
EciI	GGCGGA	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	307, 1016
Eco47III	AGCGCT	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	539
EcoRI	GAATTC	2 cut(s)	911, 993
EcoRII	CCWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	307, 1016
FaiI	YATR	3 cut(s)	108, 117, 884
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	5 cut(s)	158, 161, 240, 636, 804
FriOI	GRGCYC	2 cut(s)	307, 1016
Fsp4HI	GCNGC	5 cut(s)	158, 161, 240, 636, 804
FspBI	CTAG	2 cut(s)	30, 690
GlaI	GCGC	3 cut(s)	351, 353, 634
GluI	GCNGC	5 cut(s)	158, 161, 240, 636, 804
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	636
HapII	CCGG	2 cut(s)	272, 450
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	3 cut(s)	352, 354, 635
Hin6I	GCGC	3 cut(s)	350, 352, 633
HinP1I	GCGC	3 cut(s)	350, 352, 633
HinfI	GANTC	2 cut(s)	281, 746
HpaII	CCGG	2 cut(s)	272, 450
HphI	GGTGA	6 cut(s)	250, 304, 559, 743, 806, 852
Hpy166II	GTNNAC	2 cut(s)	199, 620
Hpy188I	TCNGA	8 cut(s)	47, 286, 475, 558, 849, 929, 992, 999
Hpy188III	TCNNGA	3 cut(s)	466, 490, 655
Hpy8I	GTNNAC	2 cut(s)	199, 620
HpyAV	CCTTC	7 cut(s)	111, 256, 271, 316, 352, 402, 589
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4V	TGCA	3 cut(s)	211, 638, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 686
HpyF3I	CTNAG	4 cut(s)	539, 629, 984, 989
HspAI	GCGC	3 cut(s)	350, 352, 633
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	169, 172, 622, 790
LweI	GCATC	2 cut(s)	369, 525
MaeI	CTAG	2 cut(s)	30, 690
MboII	GAAGA	2 cut(s)	256, 602
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	3 cut(s)	253, 854, 1022
MhlI	GDGCHC	3 cut(s)	11, 307, 1016
MluCI	AATT	5 cut(s)	109, 700, 911, 933, 993
MlyI	GAGTC	2 cut(s)	290, 740
MmeI	TCCRAC	1 cut(s)	453
MroNI	GCCGGC	1 cut(s)	271
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	317, 669
MspI	CCGG	2 cut(s)	272, 450
MspR9I	CCNGG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	2 cut(s)	301, 352
MwoI	GCNNNNNNNGC	2 cut(s)	349, 686
NaeI	GCCGGC	1 cut(s)	273
NgoMIV	GCCGGC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	10
NspV	TTCGAA	2 cut(s)	523, 588
OliI	CACNNNNGTG	1 cut(s)	669
PauI	GCGCGC	1 cut(s)	350
PctI	GAATGC	1 cut(s)	977
PdiI	GCCGGC	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	159, 162, 241, 637, 805
PleI	GAGTC	2 cut(s)	289, 740
PpsI	GAGTC	2 cut(s)	289, 740
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	3 cut(s)	253, 854, 1022
PteI	GCGCGC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	16, 961
RsaNI	GTAC	2 cut(s)	15, 960
RseI	CAYNNNNRTG	2 cut(s)	317, 669
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	5 cut(s)	158, 161, 240, 636, 804
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	290, 740
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	11, 307, 1016
SfaNI	GCATC	2 cut(s)	369, 525
SfcI	CTRYAG	1 cut(s)	636
SfuI	TTCGAA	2 cut(s)	523, 588
SmiMI	CAYNNNNRTG	2 cut(s)	317, 669
Sse9I	AATT	5 cut(s)	109, 700, 911, 933, 993
SsiI	CCGC	4 cut(s)	225, 229, 240, 729
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	2 cut(s)	30, 690
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	821
TaqI	TCGA	6 cut(s)	267, 501, 523, 588, 704, 736
TasI	AATT	5 cut(s)	109, 700, 911, 933, 993
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	3 cut(s)	170, 209, 826
TseI	GCWGC	4 cut(s)	157, 160, 635, 803
TspDTI	ATGAA	6 cut(s)	113, 335, 575, 822, 1016, 1024
TspRI	CASTG	3 cut(s)	170, 209, 826
XapI	RAATTY	2 cut(s)	911, 993
XspI	CTAG	2 cut(s)	30, 690
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.