Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009538

Physical Location & Seq

Genomic Coordinates Reverse (-)

6101109 .. 6102047

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGGAGAAGATGATGATGATGATGATGACTTCCAGTAGCAGCCCAGAAACCAGCACAAACGAAGCCACTACCACTTCAGCTTTCCCAAGCTGGAAACTTTACGAGAATCCATTTTATAACTCTCAACCTCAGCATCAAAACCACCCAGAAAAACAACCACAATGCCAAATTAGCACCACCAAGAACCATCATTGCCTTCACCTCCCTATCTCTGCTCGAAAGCTCGCTGCTTCGTTTTGGGATCTCACATTTTTCAAGCCAGTAATGGAGACTGAGATGGAGTACACAAGAGCCCAGATCATGGAACTGAAAGCTGAGCTTGAGTACGAGAGAAAGACAAGAAAGAAGTTTGAGGTGATCAACAAGAAGCTTGCCAAAGAGTTAAGTGAGGAGAGGAGGGCGAGAGAAGCAATTGAGAGTGTGTGTGAAGAACTAGCGAGAGAGATTTCAAGTCGGAATTCAGAGATTAATAGGATGAGGAAGGAAATGGAGGAAGAAAGGAAGATGCTGAGAGTGGCTGAGGTGATCAGAGAAGAGAGAGTTCAGATGAAGCTCTCTGAGGCCAAGTTTCTTTTTGAAGAGAAGGTGTTTCAGTTGAGTTGCAAACCAGTTCAAACTGAGAAGTCTCCTACTTGTGTTGAAAATGATGATCCAGTTTGCTCCGATGTGGTTTGGACTAATTCGAAGTCGGGGGTTAGCCGTGAAAATAGTGGTGGATTTTCAACAATGGCGATTCAGAGAAGGGCTTCACCGGAATCGGAGAATCCACACATAAAGAGAGGGATCAAAGGATTTGTGGAATTTCCGAGAGTGGTTCGAGCAATTGGGTCCAAAAGTAGGCATTGGGGTACAAAGTTGGAGTGCCAGAAAGCTCAGCTGAGGATTCTACTGAAGCAAAAGAGCCCCATCAGATCCAATAGTCTCATTATCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

36.27

Weight (kDa)

9.06

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64690 AT1G64690 AT1G64690 AT1G64690
fragaria_vesca	FvH4_5g10770
malus_domestica	MD06G1120900.v1.1 MD14G1137500.v1.1
prunus_persica	Prupe.5G131500_v2.0.a1
pyrus_communis	pycom06g11220 pycom12486g00040 pycom14g11270
rosa_chinensis	RchiOBHm_Chr7g0187371
rosa_laevigata	RLG00000004789
rosa_multiflora	Rmu_sc0001758.1_g000003 Rmu_sc0023375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267520
rosa_rugosa	Rorug06G0481100
rosa_samantha	Rh7AG085500 Rh7BG086900 Rh7CG086600 Rh7DG087600
rosa_wichuraiana	Rw7G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	304
AclWI	GGATC	4 cut(s)	252, 647, 794, 909
AcsI	RAATTY	2 cut(s)	460, 803
AcuI	CTGAAG	2 cut(s)	63, 914
AfaI	GTAC	3 cut(s)	287, 329, 853
AfiI	CCNNNNNNNGG	2 cut(s)	304, 840
AgsI	TTSAA	6 cut(s)	259, 453, 581, 617, 644, 726
AluBI	AGCT	9 cut(s)	83, 93, 226, 317, 322, 373, 556, 875, 880
AluI	AGCT	9 cut(s)	83, 93, 226, 317, 322, 373, 556, 875, 880
Alw26I	GTCTC	3 cut(s)	266, 633, 929
AlwI	GGATC	4 cut(s)	252, 647, 794, 909
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	2 cut(s)	42, 230
ApoI	RAATTY	2 cut(s)	460, 803
AseI	ATTAAT	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	831
AsuHPI	GGTGA	4 cut(s)	194, 370, 538, 744
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	831
BanII	GRGCYC	2 cut(s)	298, 908
BbvCI	CCTCAGC	3 cut(s)	132, 522, 881
BbvI	GCAGC	2 cut(s)	54, 217
BccI	CCATC	3 cut(s)	198, 274, 917
BceAI	ACGGC	1 cut(s)	687
BclI	TGATCA	2 cut(s)	360, 528
BcoDI	GTCTC	3 cut(s)	266, 633, 929
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	2 cut(s)	43, 231
BlpI	GCTNAGC	2 cut(s)	318, 876
BlsI	GCNGC	2 cut(s)	44, 232
Bme18I	GGWCC	1 cut(s)	831
BmgT120I	GGNCC	1 cut(s)	831
BmiI	GGNNCC	1 cut(s)	832
BmsI	GCATC	2 cut(s)	145, 498
Bpu10I	CCTNAGC	3 cut(s)	132, 522, 881
Bpu1102I	GCTNAGC	2 cut(s)	318, 876
Bpu14I	TTCGAA	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 840
Bse1I	ACTGG	4 cut(s)	36, 263, 611, 656
Bse3DI	GCAATG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	304, 840
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	9 cut(s)	146, 267, 309, 503, 513, 552, 612, 872, 890
BseNI	ACTGG	4 cut(s)	36, 263, 611, 656
BseRI	GAGGAG	3 cut(s)	20, 407, 412
BseXI	GCAGC	2 cut(s)	54, 217
BshFI	GGCC	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	755
BslI	CCNNNNNNNGG	2 cut(s)	304, 840
BsmAI	GTCTC	3 cut(s)	266, 633, 929
BsnI	GGCC	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	298, 908
Bsp143I	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
Bsp1720I	GCTNAGC	2 cut(s)	318, 876
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	9 cut(s)	145, 268, 310, 504, 514, 553, 613, 873, 889
BspLI	GGNNCC	1 cut(s)	832
BspPI	GGATC	4 cut(s)	252, 647, 794, 909
BspT104I	TTCGAA	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	36, 263, 611, 656
BssMI	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
Bst6I	CTCTTC	2 cut(s)	531, 576
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	228, 375
BstDEI	CTNAG	9 cut(s)	132, 276, 318, 512, 522, 561, 621, 876, 881
BstF5I	GGATG	1 cut(s)	483
BstKTI	GATC	7 cut(s)	247, 303, 363, 531, 655, 789, 917
BstMAI	GTCTC	3 cut(s)	266, 633, 929
BstMBI	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 410
BstV1I	GCAGC	2 cut(s)	54, 217
BstX2I	RGATCY	2 cut(s)	244, 914
BstYI	RGATCY	2 cut(s)	244, 914
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	228, 375
Cfr13I	GGNCC	1 cut(s)	831
Csp6I	GTAC	3 cut(s)	286, 328, 852
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	3 cut(s)	286, 328, 852
DdeI	CTNAG	9 cut(s)	132, 276, 318, 512, 522, 561, 621, 876, 881
DpnI	GATC	7 cut(s)	246, 302, 362, 530, 654, 788, 916
DpnII	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
Eam1104I	CTCTTC	2 cut(s)	531, 576
EarI	CTCTTC	2 cut(s)	531, 576
Eco24I	GRGCYC	2 cut(s)	298, 908
Eco47I	GGWCC	1 cut(s)	831
Eco57I	CTGAAG	2 cut(s)	63, 914
EcoRI	GAATTC	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	298, 908
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	120, 305, 776
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	360, 528
Fnu4HI	GCNGC	2 cut(s)	43, 231
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	2 cut(s)	298, 908
Fsp4HI	GCNGC	2 cut(s)	43, 231
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	2 cut(s)	43, 231
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	755
Hin1II	CATG	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	5 cut(s)	109, 736, 758, 766, 886
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	4 cut(s)	194, 370, 538, 744
Hpy166II	GTNNAC	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	4 cut(s)	209, 478, 580, 738
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 410
HpyF3I	CTNAG	9 cut(s)	132, 276, 318, 512, 522, 561, 621, 876, 881
Hsp92II	CATG	1 cut(s)	307
Ksp22I	TGATCA	2 cut(s)	360, 528
Kzo9I	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	54, 217
LweI	GCATC	2 cut(s)	145, 498
MaeI	CTAG	1 cut(s)	437
MalI	GATC	7 cut(s)	246, 302, 362, 530, 654, 788, 916
MboI	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
MboII	GAAGA	6 cut(s)	22, 443, 509, 517, 548, 593
MfeI	CAATTG	2 cut(s)	414, 825
MflI	RGATCY	2 cut(s)	244, 914
MhlI	GDGCHC	2 cut(s)	298, 908
MluCI	AATT	6 cut(s)	171, 414, 460, 682, 803, 825
MmeI	TCCRAC	2 cut(s)	437, 840
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	2 cut(s)	386, 471
MspA1I	CMGCKG	1 cut(s)	880
MspI	CCGG	1 cut(s)	755
MunI	CAATTG	2 cut(s)	414, 825
MwoI	GCNNNNNNNGC	2 cut(s)	174, 410
NdeII	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	686
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	5 cut(s)	109, 736, 758, 766, 886
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	44, 232
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	832
PspPI	GGNCC	1 cut(s)	831
PsuI	RGATCY	2 cut(s)	244, 914
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	3 cut(s)	287, 329, 853
RsaNI	GTAC	3 cut(s)	286, 328, 852
SaqAI	TTAA	2 cut(s)	386, 471
SatI	GCNGC	2 cut(s)	43, 231
Sau3AI	GATC	7 cut(s)	244, 300, 360, 528, 652, 786, 914
Sau96I	GGNCC	1 cut(s)	831
SduI	GDGCHC	2 cut(s)	298, 908
SfaNI	GCATC	2 cut(s)	145, 498
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	6 cut(s)	171, 414, 460, 682, 803, 825
SspMI	CTAG	1 cut(s)	437
TaqI	TCGA	3 cut(s)	220, 686, 820
TasI	AATT	6 cut(s)	171, 414, 460, 682, 803, 825
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	5 cut(s)	109, 736, 758, 766, 886
Tru1I	TTAA	2 cut(s)	386, 471
Tru9I	TTAA	2 cut(s)	386, 471
TseI	GCWGC	2 cut(s)	42, 230
TspDTI	ATGAA	1 cut(s)	566
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	831
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	2 cut(s)	460, 803
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.