pycom06g11220

Protein BRANCHLESS TRICHOME

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009538
Physical Location & Seq
Forward (+)
16520755 .. 16522376
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11220.2

Sequence Viewer

Length: 1224 bp
ATGAATCTAGGCAACACTATGTGGCAGTACGGACATGGTACTGGTATAATTTTTTTCTTTGATACAACACAATCCATCCAGATCTCCAAAGCAACTTCCCTCCAAAGATCAAATGGGCCTACCCCAATTGCTTTCCTGGCTGAGATAGTCCCCATTAGAAGAAAAATAAAGAGAAAGGTAAAAAGAAAGAAGCAGGAGAAGATGTTCATGATGATGAGCACCAATAGTACTCCTCCTCCTAGCCCAGGAAATACCAGAAATATTGAAATCACCACTTCCGCTTTCCCTACCTGGAAACTGTACGAAAACCCTTTTTATAATTCTCAAAAACCCCATCAAAATCCTCCCCTACAACCACAAAACCAGCAGCGTTCATCATTGCCTGCACCTCCCCATCTCCGCCCGCAAGCTCGCCGCTTCCTTCTGGGATCGATCACCTTCTTCAAGCCGGTAATGGAGTCCGAGATGGATTACACGCGAGCCCAGATCATCGAAATGAAAGCCGAGCTCGAGTACCAGCGTAAGGCGCGCAAGAAGTTGGAGAGCTCGAACAAGAGGTTGGCCAAGGAGTTGGGGGAGGAGAGGAGGGCGAGAGAAGCGATCGAGAGGGTTTGCGAGGAGCTTGCTAGAGAGATTTCTTTCGGGAAGTCGGAGATCACGAAGATGAGGAAAGAGATCGAGGAGGAGAGGAAAATGCTTCGAATGGCGGAGGTGCTGAGGGAGGAGAGAGTTCAGATGAAGCTCGCCGAGGCGAGACTTCTGTTCGAAGAGAAGGTGTTAGAGTTGGAGGGGTGTAAAAAAATGCTGTGTGCCGCCGAGAACTCACATTTCAAGATCAAACATAAAAATGAGGTTGTTAACGTTGCTAGTTTGGATAGTTCCAGTGAAATGTCTGGGGCTTTTTGTGGTGATCGGAACAATGATTCTGTTTCCAGTTTTTCTACTGCAACTTCAAGGGAAGTGCTTTTGGGTGAAAAAGCAGCTTTCAGTGAAAACAGCGGTGGATTTTCATCCATGGCGGTTCAGAAAAGAGCCTCACCAGAACCAGAAAATCCTCACATAAAGAGAGGGATCAAGGGGTTTGTTGAATTCCCAAGAGTTGTCAGAGCAATTGGATCAAAAAGTAGGCATTGGGGCACAAAGCTTGAGTGCCAAAAAGCTCAGCTCAGAATTCTTATGAAGCAAAAGAGCCCCATTAGATCCAATAGTTTCATTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

46.6

Weight (kDa)

9.93

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AccII CGCG 2 cut(s) 478, 529
AciI CCGC 8 cut(s) 279, 400, 404, 415, 707, 813, 999, 1019
AclI AACGTT 1 cut(s) 861
AclWI GGATC 4 cut(s) 436, 1079, 1123, 1194
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 2 cut(s) 1088, 1170
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 5 cut(s) 29, 40, 229, 302, 515
AfiI CCNNNNNNNGG 2 cut(s) 245, 523
AgsI TTSAA 5 cut(s) 266, 445, 832, 954, 1088
AjnI CCWGG 3 cut(s) 135, 244, 290
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 9 cut(s) 410, 508, 546, 622, 742, 983, 1144, 1160, 1165
AluI AGCT 9 cut(s) 410, 508, 546, 622, 742, 983, 1144, 1160, 1165
Alw21I GWGCWC 3 cut(s) 221, 510, 548
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 4 cut(s) 436, 1079, 1123, 1194
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 2 cut(s) 116, 561
ApeKI GCWGC 2 cut(s) 367, 980
ApoI RAATTY 2 cut(s) 1088, 1170
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 529, 531
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 5 cut(s) 262, 427, 920, 983, 1029
AsuII TTCGAA 2 cut(s) 700, 765
AvaI CYCGRG 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 1139
BalI TGGCCA 1 cut(s) 563
BanII GRGCYC 4 cut(s) 484, 510, 548, 1193
Bbv12I GWGCWC 3 cut(s) 221, 510, 548
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 2 cut(s) 379, 992
BccI CCATC 4 cut(s) 83, 342, 402, 460
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 3 cut(s) 137, 246, 292
BcoDI GTCTC 1 cut(s) 748
BfaI CTAG 4 cut(s) 8, 240, 627, 867
BglII AGATCT 1 cut(s) 81
BisI GCNGC 4 cut(s) 368, 415, 813, 981
BlpI GCTNAGC 1 cut(s) 1161
BlsI GCNGC 4 cut(s) 369, 416, 814, 982
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 3 cut(s) 137, 246, 292
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 3 cut(s) 137, 246, 292
Bpu10I CCTNAGC 1 cut(s) 716
Bpu1102I GCTNAGC 1 cut(s) 1161
Bpu14I TTCGAA 2 cut(s) 700, 765
BpuEI CTTGAG 1 cut(s) 1166
Bsa29I ATCGAT 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 1009
BsaJI CCNNGG 4 cut(s) 244, 564, 747, 1014
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 523
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 3 cut(s) 46, 882, 933
Bse3DI GCAATG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 1009
BseBI CCWGG 3 cut(s) 137, 246, 292
BseCI ATCGAT 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 244, 564, 747, 1014
BseGI GGATG 2 cut(s) 75, 1010
BseJI GATNNNNATC 1 cut(s) 1009
BseLI CCNNNNNNNGG 2 cut(s) 245, 523
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 4 cut(s) 132, 707, 1175, 1180
BseNI ACTGG 3 cut(s) 46, 882, 933
BsePI GCGCGC 1 cut(s) 527
BseRI GAGGAG 8 cut(s) 222, 225, 593, 598, 632, 695, 698, 737
BseSI GKGCMC 1 cut(s) 1139
BseXI GCAGC 2 cut(s) 379, 992
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 478, 529
Bsh1285I CGRYCG 1 cut(s) 603
BshFI GGCC 2 cut(s) 118, 563
BshVI ATCGAT 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 603
BsiHKAI GWGCWC 3 cut(s) 221, 510, 548
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 245, 523
BsmAI GTCTC 1 cut(s) 748
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 118, 563
BsoBI CYCGRG 1 cut(s) 509
Bsp119I TTCGAA 2 cut(s) 700, 765
Bsp1286I GDGCHC 6 cut(s) 221, 484, 510, 548, 1139, 1193
Bsp1720I GCTNAGC 1 cut(s) 1161
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 8 cut(s) 279, 400, 404, 415, 707, 813, 999, 1019
BspANI GGCC 2 cut(s) 118, 563
BspCNI CTCAG 4 cut(s) 133, 708, 1174, 1179
BspDI ATCGAT 1 cut(s) 431
BspFNI CGCG 2 cut(s) 478, 529
BspHI TCATGA 1 cut(s) 207
BspPI GGATC 4 cut(s) 436, 1079, 1123, 1194
BspT104I TTCGAA 2 cut(s) 700, 765
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 3 cut(s) 46, 882, 933
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 4 cut(s) 244, 564, 747, 1014
BssHII GCGCGC 1 cut(s) 527
BssT1I CCWWGG 2 cut(s) 564, 1014
Bst2UI CCWGG 3 cut(s) 137, 246, 292
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 762
BstBI TTCGAA 2 cut(s) 700, 765
BstC8I GCNNGC 8 cut(s) 384, 404, 408, 412, 480, 529, 624, 744
BstDEI CTNAG 4 cut(s) 141, 716, 1161, 1166
BstDSI CCRYGG 1 cut(s) 1014
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 75, 1010
BstFNI CGCG 2 cut(s) 478, 529
BstHHI GCGC 2 cut(s) 529, 531
BstMAI GTCTC 1 cut(s) 748
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 3 cut(s) 137, 526, 596
BstNI CCWGG 3 cut(s) 137, 246, 292
BstSCI CCNGG 3 cut(s) 135, 244, 290
BstSLI GKGCMC 1 cut(s) 1139
BstUI CGCG 2 cut(s) 478, 529
BstV1I GCAGC 2 cut(s) 379, 992
BstX2I RGATCY 2 cut(s) 81, 1199
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 2 cut(s) 81, 1199
Bsu15I ATCGAT 1 cut(s) 431
BsuRI GGCC 2 cut(s) 118, 563
BsuTUI ATCGAT 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 1014
BtsCI GGATG 2 cut(s) 75, 1010
BtsIMutI CAGTG 2 cut(s) 889, 994
Cac8I GCNNGC 8 cut(s) 384, 404, 408, 412, 480, 529, 624, 744
CciI TCATGA 1 cut(s) 207
CfoI GCGC 2 cut(s) 529, 531
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 431
Csp6I GTAC 5 cut(s) 28, 39, 228, 301, 514
CviAII CATG 3 cut(s) 35, 208, 1015
CviQI GTAC 5 cut(s) 28, 39, 228, 301, 514
DdeI CTNAG 4 cut(s) 141, 716, 1161, 1166
DraIII CACNNNGTG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
EciI GGCGGA 2 cut(s) 389, 722
Ecl136II GAGCTC 2 cut(s) 508, 546
Eco130I CCWWGG 2 cut(s) 564, 1014
Eco24I GRGCYC 4 cut(s) 484, 510, 548, 1193
Eco53kI GAGCTC 2 cut(s) 508, 546
Eco88I CYCGRG 1 cut(s) 509
EcoICRI GAGCTC 2 cut(s) 508, 546
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRI GAATTC 2 cut(s) 1088, 1170
EcoRII CCWGG 3 cut(s) 135, 244, 290
EcoT14I CCWWGG 2 cut(s) 564, 1014
EcoT38I GRGCYC 4 cut(s) 484, 510, 548, 1193
ErhI CCWWGG 2 cut(s) 564, 1014
FaeI CATG 3 cut(s) 38, 211, 1018
FaiI YATR 9 cut(s) 20, 36, 47, 209, 318, 843, 1016, 1061, 1178
FaqI GGGAC 1 cut(s) 134
FatI CATG 3 cut(s) 34, 207, 1014
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 368, 415, 813, 981
FokI GGATG 2 cut(s) 62, 997
FriOI GRGCYC 4 cut(s) 484, 510, 548, 1193
Fsp4HI GCNGC 4 cut(s) 368, 415, 813, 981
FspBI CTAG 4 cut(s) 8, 240, 627, 867
GlaI GCGC 2 cut(s) 528, 530
GluI GCNGC 4 cut(s) 368, 415, 813, 981
HaeIII GGCC 2 cut(s) 118, 563
HapII CCGG 1 cut(s) 449
HhaI GCGC 2 cut(s) 529, 531
Hin1II CATG 3 cut(s) 38, 211, 1018
Hin6I GCGC 2 cut(s) 527, 529
HinP1I GCGC 2 cut(s) 527, 529
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 3 cut(s) 4, 458, 923
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 1 cut(s) 449
HphI GGTGA 5 cut(s) 262, 427, 920, 983, 1029
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 7 cut(s) 463, 652, 735, 915, 1026, 1106, 1169
Hpy188III TCNNGA 6 cut(s) 79, 208, 604, 643, 658, 832
Hpy8I GTNNAC 1 cut(s) 859
HpyAV CCTTC 3 cut(s) 431, 448, 766
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 2 cut(s) 386, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 526, 596
HpyF3I CTNAG 4 cut(s) 141, 716, 1161, 1166
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 3 cut(s) 38, 211, 1018
HspAI GCGC 2 cut(s) 527, 529
KspAI GTTAAC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 379, 992
MaeI CTAG 4 cut(s) 8, 240, 627, 867
MaeII ACGT 1 cut(s) 861
MboII GAAGA 5 cut(s) 171, 211, 433, 673, 779
MfeI CAATTG 2 cut(s) 126, 1110
MflI RGATCY 2 cut(s) 81, 1199
MhlI GDGCHC 6 cut(s) 221, 484, 510, 548, 1139, 1193
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 6 cut(s) 48, 126, 319, 1088, 1110, 1170
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 3 cut(s) 519, 630, 765
Mox20I TGGCCA 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 203
MscI TGGCCA 1 cut(s) 563
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 4 cut(s) 212, 494, 662, 846
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 3 cut(s) 137, 246, 292
MunI CAATTG 2 cut(s) 126, 1110
MvaI CCWGG 3 cut(s) 137, 246, 292
MvnI CGCG 2 cut(s) 478, 529
MwoI GCNNNNNNNGC 3 cut(s) 137, 526, 596
NcoI CCATGG 1 cut(s) 1014
NlaIII CATG 3 cut(s) 38, 211, 1018
NmeAIII GCCGAG 3 cut(s) 529, 772, 841
NspV TTCGAA 2 cut(s) 700, 765
PaeR7I CTCGAG 1 cut(s) 509
PagI TCATGA 1 cut(s) 207
PauI GCGCGC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 4, 923
PkrI GCNGC 4 cut(s) 369, 416, 814, 982
Ple19I CGATCG 1 cut(s) 603
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 2 cut(s) 510, 548
Psp1406I AACGTT 1 cut(s) 861
Psp6I CCWGG 3 cut(s) 135, 244, 290
PspGI CCWGG 3 cut(s) 135, 244, 290
PspPI GGNCC 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 509
PsuI RGATCY 2 cut(s) 81, 1199
PteI GCGCGC 1 cut(s) 527
PvuI CGATCG 1 cut(s) 603
RsaI GTAC 5 cut(s) 29, 40, 229, 302, 515
RsaNI GTAC 5 cut(s) 28, 39, 228, 301, 514
RseI CAYNNNNRTG 4 cut(s) 212, 494, 662, 846
SacI GAGCTC 2 cut(s) 510, 548
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 4 cut(s) 368, 415, 813, 981
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 3 cut(s) 137, 246, 292
SduI GDGCHC 6 cut(s) 221, 484, 510, 548, 1139, 1193
Sfr274I CTCGAG 1 cut(s) 509
SfuI TTCGAA 2 cut(s) 700, 765
SlaI CTCGAG 1 cut(s) 509
SmiMI CAYNNNNRTG 4 cut(s) 212, 494, 662, 846
SmlI CTYRAG 2 cut(s) 509, 1145
SmoI CTYRAG 2 cut(s) 509, 1145
Sse9I AATT 6 cut(s) 48, 126, 319, 1088, 1110, 1170
SsiI CCGC 8 cut(s) 279, 400, 404, 415, 707, 813, 999, 1019
SspI AATATT 1 cut(s) 262
SspMI CTAG 4 cut(s) 8, 240, 627, 867
SstI GAGCTC 2 cut(s) 510, 548
StyD4I CCNGG 3 cut(s) 135, 244, 290
StyI CCWWGG 2 cut(s) 564, 1014
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 864
TaqI TCGA 8 cut(s) 431, 492, 510, 548, 603, 678, 700, 765
TasI AATT 6 cut(s) 48, 126, 319, 1088, 1110, 1170
TatI WGTACW 1 cut(s) 227
TauI GCSGC 2 cut(s) 417, 815
TfiI GAWTC 2 cut(s) 4, 923
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 2 cut(s) 889, 994
TseI GCWGC 2 cut(s) 367, 980
TspDTI ATGAA 8 cut(s) 17, 196, 363, 512, 752, 999, 1193, 1201
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 889, 994
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 1088, 1170
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 4 cut(s) 8, 240, 627, 867
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.