Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Forward (+)

24331373 .. 24333999

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCTATAAATATAAGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAGACGTTCTTGATCCGTTTAATAGATCAATCACTCTAAAGGTTACTTATGGCCAAAGAGAGGTGACTAATGGCTTGGATCTAAGGCCTTCTCAGGTTCAAAACAAGCCAAGAGTTGAGATTGGTGGAGAAGACCTCAGGAACTTCTATACTTTGGTTATGGTGGATCCAGATGTTCCAAGTCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCCCTGCTACAACTGGAACAACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGTCCCACTGCAGGAATTCATCGTGTCGTGTTTATATTGTTTCGACAGCTTGGCAGGCAAACAGTGTATGCACCAGGGTGGCGCCAGAACTTCAACACTCGCGAGTTTGCTGAGATCTACAATCTCGGCCTTCCCGTGGCCGCAGTTTTCTACAATTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAAGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0010119 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

175

Amino Acids

19.81

Weight (kDa)

7.75

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	96 - 176	3.2e-10	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	1 cut(s)	435
AciI	CCGC	2 cut(s)	474, 510
AclWI	GGATC	4 cut(s)	53, 132, 206, 219
AcoI	YGGCCR	2 cut(s)	97, 471
AcsI	RAATTY	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	415
AfiI	CCNNNNNNNGG	4 cut(s)	106, 265, 344, 469
AgsI	TTSAA	2 cut(s)	146, 427
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	1 cut(s)	409
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	12, 42
AlwI	GGATC	4 cut(s)	53, 132, 206, 219
AoxI	GGCC	4 cut(s)	97, 131, 460, 471
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	121, 233, 280
AxyI	CCTNAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	12, 42
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	418
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	2 cut(s)	474, 508
BlsI	GCNGC	2 cut(s)	475, 509
Bme1390I	CCNGG	1 cut(s)	408
BmiI	GGNNCC	2 cut(s)	213, 416
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	4 cut(s)	165, 197, 240, 272
BsaHI	GRCGYC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	407, 468
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 265, 344, 469
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	407, 468
BseLI	CCNNNNNNNGG	4 cut(s)	106, 265, 344, 469
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	152, 196, 435
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	4 cut(s)	99, 133, 462, 473
BshNI	GGYRCC	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	106, 265, 344, 469
BsmAI	GTCTC	2 cut(s)	12, 42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	99, 133, 462, 473
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	5 cut(s)	58, 71, 124, 211, 447
Bsp68I	TCGCGA	1 cut(s)	435
BspACI	CCGC	2 cut(s)	474, 510
BspANI	GGCC	4 cut(s)	99, 133, 462, 473
BspCNI	CTCAG	3 cut(s)	151, 195, 436
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	213, 416
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	4 cut(s)	53, 132, 206, 219
BspT107I	GGYRCC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	407, 468
BssMI	GATC	5 cut(s)	58, 71, 124, 211, 447
BssNI	GRCGYC	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	4 cut(s)	128, 138, 182, 444
BstDSI	CCRYGG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	61, 74, 127, 214, 450
BstMAI	GTCTC	2 cut(s)	12, 42
BstMBI	GATC	5 cut(s)	58, 71, 124, 211, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	3 cut(s)	124, 211, 447
BstYI	RGATCY	3 cut(s)	124, 211, 447
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	99, 133, 462, 473
BtgI	CCRYGG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 402
BtuMI	TCGCGA	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	417
CviJI	RGCY	8 cut(s)	99, 120, 133, 154, 382, 462, 473, 507
CviKI_1	RGCY	8 cut(s)	99, 120, 133, 154, 382, 462, 473, 507
DdeI	CTNAG	4 cut(s)	128, 138, 182, 444
DinI	GGCGCC	1 cut(s)	416
DpnI	GATC	5 cut(s)	60, 73, 126, 213, 449
DpnII	GATC	5 cut(s)	58, 71, 124, 211, 447
EaeI	YGGCCR	2 cut(s)	97, 471
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	42
FaiI	YATR	8 cut(s)	8, 14, 29, 96, 195, 206, 368, 402
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	474, 508
Fsp4HI	GCNGC	2 cut(s)	474, 508
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	2 cut(s)	474, 508
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	4 cut(s)	99, 133, 462, 473
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HphI	GGTGA	3 cut(s)	121, 233, 280
Hpy188I	TCNGA	2 cut(s)	248, 495
Hpy188III	TCNNGA	4 cut(s)	56, 184, 215, 434
HpyAV	CCTTC	2 cut(s)	144, 473
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	344, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	4 cut(s)	128, 138, 182, 444
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	415
HspAI	GCGC	1 cut(s)	415
KasI	GGCGCC	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	58, 71, 124, 211, 447
Lsp1109I	GCAGC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	4 cut(s)	88, 109, 268, 320
MalI	GATC	5 cut(s)	60, 73, 126, 213, 449
MboI	GATC	5 cut(s)	58, 71, 124, 211, 447
MboII	GAAGA	2 cut(s)	188, 528
MfeI	CAATTG	1 cut(s)	487
MflI	RGATCY	3 cut(s)	124, 211, 447
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	348, 487
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	33, 100, 191, 249, 254, 489, 506
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	409
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	388
NarI	GGCGCC	1 cut(s)	415
NdeII	GATC	5 cut(s)	58, 71, 124, 211, 447
NlaIV	GGNNCC	2 cut(s)	213, 416
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	109, 268
NruI	TCGCGA	1 cut(s)	435
OliI	CACNNNNGTG	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	475, 509
PluTI	GGCGCC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	213, 416
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	3 cut(s)	124, 211, 447
RruI	TCGCGA	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	474, 508
Sau3AI	GATC	5 cut(s)	58, 71, 124, 211, 447
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	8 cut(s)	54, 90, 111, 144, 183, 246, 302, 384
SfcI	CTRYAG	1 cut(s)	342
SfoI	GGCGCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	409
Sse9I	AATT	2 cut(s)	348, 487
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	2 cut(s)	474, 510
SspDI	GGCGCC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	376
TasI	AATT	2 cut(s)	348, 487
TauI	GCSGC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	346, 402
TseFI	GTSAC	2 cut(s)	109, 268
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	2 cut(s)	109, 268
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	346, 402
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	348
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.