RchiOBHm_Chr3g0447431

Protein HEADING DATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005338
Physical Location & Seq
Forward (+)
142081 .. 143529
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41489

Sequence Viewer

Length: 525 bp
ATGCCCAGGGACAGGGACCCTCTTGTTGTGGGAAGAGTCATAGGGGATGTTTTGGACCCCTTTACAAGGTCTGTTTCTCTCCGGGTGACTTTCGCTACCAGGGAGGTTAACAATGGTTGTGAGCTCAAACCTTCCCAAGTTGTCACCCAACCTCGAGTTGATATAGGTGGGGAGGATCTTAGGACCTTCTATACTCTGGTCATGGTGGATCCTGATGCACCTAGCCCAAGTGACCCCAACCTGAAGGAATATATGCATTGGTTAGTCACTGATATTCCTGCAACAACTGGGGCAAGTTTCGGCCAAGAGATTGTGTGTTATGAAAGTCCACGGCCAACAGTGGGGATTCATCGCTTTGTTTTTGTGTTGTTCCGGCAGTTGGGAAGGCAAACCGTGTATGCTCCAGGATGGCGCCAAAACTTTAACACCAAAGACTTTGCCGAGCTCTACAATCTTGGATCACCAGTGGCTGCGGTTTACTTTAACTGCCAAAGGGAAAGTGGCTCCGGCGGAAGGAGAAGATAA

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

7.73

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 60 - 147 1.1e-11 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AciI CCGC 2 cut(s) 473, 510
AclWI GGATC 4 cut(s) 183, 203, 216, 466
AcoI YGGCCR 2 cut(s) 301, 332
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 412
AfiI CCNNNNNNNGG 5 cut(s) 12, 66, 341, 379, 513
AjnI CCWGG 3 cut(s) 5, 98, 403
AluBI AGCT 2 cut(s) 124, 445
AluI AGCT 2 cut(s) 124, 445
Alw21I GWGCWC 2 cut(s) 126, 447
AlwI GGATC 4 cut(s) 183, 203, 216, 466
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 2 cut(s) 301, 332
ApeKI GCWGC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 3 cut(s) 16, 55, 183
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 3 cut(s) 97, 136, 453
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 3 cut(s) 16, 55, 183
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 2 cut(s) 126, 447
Bbv12I GWGCWC 2 cut(s) 126, 447
BbvI GCAGC 1 cut(s) 457
BccI CCATC 1 cut(s) 402
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 3 cut(s) 7, 100, 405
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 415
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 4 cut(s) 7, 83, 100, 405
Bme18I GGWCC 3 cut(s) 16, 55, 183
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 16, 55, 183
BmiI GGNNCC 6 cut(s) 17, 18, 57, 210, 413, 505
BmrFI CCNGG 4 cut(s) 7, 83, 100, 405
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 4 cut(s) 5, 6, 99, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 66, 341, 379, 513
Bse1I ACTGG 2 cut(s) 292, 464
BseBI CCWGG 3 cut(s) 7, 100, 405
BseDI CCNNGG 4 cut(s) 5, 6, 99, 329
BseGI GGATG 2 cut(s) 52, 413
BseLI CCNNNNNNNGG 5 cut(s) 12, 66, 341, 379, 513
BseNI ACTGG 2 cut(s) 292, 464
BseXI GCAGC 1 cut(s) 457
BshFI GGCC 2 cut(s) 303, 334
BshNI GGYRCC 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 126, 447
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 3 cut(s) 82, 373, 507
BslFI GGGAC 2 cut(s) 23, 29
BslI CCNNNNNNNGG 5 cut(s) 12, 66, 341, 379, 513
BsmFI GGGAC 2 cut(s) 23, 29
BsnI GGCC 2 cut(s) 303, 334
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 126, 447
Bsp143I GATC 3 cut(s) 175, 208, 458
BspACI CCGC 2 cut(s) 473, 510
BspANI GGCC 2 cut(s) 303, 334
BspLI GGNNCC 6 cut(s) 17, 18, 57, 210, 413, 505
BspPI GGATC 4 cut(s) 183, 203, 216, 466
BspT107I GGYRCC 1 cut(s) 411
BsrI ACTGG 2 cut(s) 292, 464
BssECI CCNNGG 4 cut(s) 5, 6, 99, 329
BssMI GATC 3 cut(s) 175, 208, 458
BssNI GRCGYC 1 cut(s) 412
Bst2UI CCWGG 3 cut(s) 7, 100, 405
Bst4CI ACNGT 2 cut(s) 340, 394
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 329
BstENI CCTNNNNNAGG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 52, 413
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 3 cut(s) 178, 211, 461
BstMBI GATC 3 cut(s) 175, 208, 458
BstNI CCWGG 3 cut(s) 7, 100, 405
BstSCI CCNGG 4 cut(s) 5, 81, 98, 403
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 175, 208
BstYI RGATCY 2 cut(s) 175, 208
BsuRI GGCC 2 cut(s) 303, 334
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 52, 413
BtsIMutI CAGTG 3 cut(s) 267, 345, 471
CaiI CAGNNNCTG 1 cut(s) 470
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 3 cut(s) 16, 55, 183
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 124, 225, 303, 334, 445, 470, 504
CviKI_1 RGCY 7 cut(s) 124, 225, 303, 334, 445, 470, 504
DdeI CTNAG 1 cut(s) 179
DinI GGCGCC 1 cut(s) 413
DpnI GATC 3 cut(s) 177, 210, 460
DpnII GATC 3 cut(s) 175, 208, 458
EaeI YGGCCR 2 cut(s) 301, 332
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 1 cut(s) 525
Ecl136II GAGCTC 2 cut(s) 124, 445
Eco24I GRGCYC 2 cut(s) 126, 447
Eco47I GGWCC 3 cut(s) 16, 55, 183
Eco53kI GAGCTC 2 cut(s) 124, 445
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 2 cut(s) 124, 445
EcoNI CCTNNNNNAGG 1 cut(s) 64
EcoO109I RGGNCCY 2 cut(s) 16, 183
EcoRII CCWGG 3 cut(s) 5, 98, 403
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 2 cut(s) 126, 447
EgeI GGCGCC 1 cut(s) 413
EheI GGCGCC 1 cut(s) 413
FaeI CATG 1 cut(s) 205
FaiI YATR 8 cut(s) 41, 164, 192, 203, 252, 254, 321, 399
FaqI GGGAC 2 cut(s) 23, 29
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 2 cut(s) 59, 420
FriOI GRGCYC 2 cut(s) 126, 447
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 413
GluI GCNGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 2 cut(s) 303, 334
HapII CCGG 3 cut(s) 82, 373, 507
HhaI GCGC 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 36, 346
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 3 cut(s) 82, 373, 507
HphI GGTGA 3 cut(s) 97, 136, 453
Hpy166II GTNNAC 3 cut(s) 109, 329, 478
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 109, 329, 478
HpyAV CCTTC 5 cut(s) 141, 196, 238, 378, 507
HpyCH4III ACNGT 2 cut(s) 340, 394
HpyCH4V TGCA 3 cut(s) 218, 256, 281
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 412
KasI GGCGCC 1 cut(s) 411
KflI GGGWCCC 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 175, 208, 458
LmnI GCTCC 2 cut(s) 406, 509
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 4 cut(s) 85, 142, 230, 265
MalI GATC 3 cut(s) 177, 210, 460
MboI GATC 3 cut(s) 175, 208, 458
MboII GAAGA 1 cut(s) 45
MflI RGATCY 2 cut(s) 175, 208
MhlI GDGCHC 2 cut(s) 126, 447
Mly113I GGCGCC 1 cut(s) 412
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 4 cut(s) 30, 97, 162, 166
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 3 cut(s) 108, 423, 483
MspI CCGG 3 cut(s) 82, 373, 507
MspR9I CCNGG 4 cut(s) 7, 83, 100, 405
MvaI CCWGG 3 cut(s) 7, 100, 405
NarI GGCGCC 1 cut(s) 412
NciI CCSGG 1 cut(s) 83
NdeII GATC 3 cut(s) 175, 208, 458
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 6 cut(s) 17, 18, 57, 210, 413, 505
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 4 cut(s) 85, 142, 230, 265
NsiI ATGCAT 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 153
PasI CCCWGGG 1 cut(s) 6
PfeI GAWTC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 2 cut(s) 16, 183
Psp124BI GAGCTC 2 cut(s) 126, 447
Psp5II RGGWCCY 2 cut(s) 16, 183
Psp6I CCWGG 3 cut(s) 5, 98, 403
PspGI CCWGG 3 cut(s) 5, 98, 403
PspN4I GGNNCC 6 cut(s) 17, 18, 57, 210, 413, 505
PspPI GGNCC 3 cut(s) 16, 55, 183
PspPPI RGGWCCY 2 cut(s) 16, 183
PspXI VCTCGAGB 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 175, 208
SacI GAGCTC 2 cut(s) 126, 447
SaqAI TTAA 3 cut(s) 108, 423, 483
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 3 cut(s) 175, 208, 458
Sau96I GGNCC 3 cut(s) 16, 55, 183
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 4 cut(s) 7, 83, 100, 405
SduI GDGCHC 2 cut(s) 126, 447
SfaNI GCATC 1 cut(s) 205
SfoI GGCGCC 1 cut(s) 413
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 3 cut(s) 16, 55, 183
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SsiI CCGC 2 cut(s) 473, 510
SspDI GGCGCC 1 cut(s) 411
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 2 cut(s) 126, 447
StyD4I CCNGG 4 cut(s) 5, 81, 98, 403
TaaI ACNGT 2 cut(s) 340, 394
TaqI TCGA 1 cut(s) 154
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 108, 423, 483
Tru9I TTAA 3 cut(s) 108, 423, 483
TscAI CASTG 3 cut(s) 274, 345, 471
TseFI GTSAC 4 cut(s) 85, 142, 230, 265
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 4 cut(s) 85, 142, 230, 265
TspDTI ATGAA 2 cut(s) 336, 338
TspRI CASTG 3 cut(s) 274, 345, 471
VpaK11BI GGWCC 3 cut(s) 16, 55, 183
XagI CCTNNNNNAGG 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XhoI CTCGAG 1 cut(s) 153
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.