Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

11000771 .. 11003010

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAGATGTTCTTGATCCTTTCACGAGGTTGGTCTCTCTTAAGGTCACTTATGGCCATAGAGAGGTTACTAATGGCTTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGATTGGAGGAGACGACTTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCTCACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCACCACTGGAAATGCCTTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCTCGGGAATTCATCGTATTGTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCACCGGGGTGGCGCCAACAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTTCCTGTGGCTGCCTCTTACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0010119 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

175

Amino Acids

19.69

Weight (kDa)

7.76

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	63 - 144	2.6e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	265
AclWI	GGATC	5 cut(s)	14, 53, 132, 206, 219
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	187, 348
AcuI	CTGAAG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	106, 265, 344
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	427, 487
AjiI	CACGTC	1 cut(s)	335
AleI	CACNNNNGTG	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	82, 168
AlwI	GGATC	5 cut(s)	14, 53, 132, 206, 219
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	2 cut(s)	97, 131
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	187, 348
AspLEI	GCGC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	233, 280
AvaI	CYCGRG	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	414
BauI	CACGAG	2 cut(s)	67, 432
BbsI	GAAGAC	2 cut(s)	394, 455
BbvI	GCAGC	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	82, 168
BfoI	RGCGCY	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	213, 416
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	394, 455
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	198, 342, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 265, 344
Bse1I	ACTGG	2 cut(s)	266, 295
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	198, 342, 407
BseLI	CCNNNNNNNGG	3 cut(s)	106, 265, 344
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	266, 295
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	2 cut(s)	99, 133
BshNI	GGYRCC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	376, 407
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	106, 265, 344
BsmAI	GTCTC	2 cut(s)	82, 168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	99, 133
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	5 cut(s)	19, 58, 124, 211, 447
BspANI	GGCC	2 cut(s)	99, 133
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	213, 416
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	5 cut(s)	14, 53, 132, 206, 219
BspT107I	GGYRCC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	266, 295
BssECI	CCNNGG	3 cut(s)	198, 342, 407
BssMI	GATC	5 cut(s)	19, 58, 124, 211, 447
BssNI	GRCGYC	1 cut(s)	415
BssSI	CACGAG	2 cut(s)	67, 432
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	2 cut(s)	67, 432
Bst4CI	ACNGT	2 cut(s)	397, 423
BstACI	GRCGYC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	128, 444
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	22, 61, 127, 214, 450
BstMAI	GTCTC	2 cut(s)	82, 168
BstMBI	GATC	5 cut(s)	19, 58, 124, 211, 447
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	2 cut(s)	394, 455
BstX2I	RGATCY	4 cut(s)	19, 124, 211, 447
BstYI	RGATCY	4 cut(s)	19, 124, 211, 447
BsuRI	GGCC	2 cut(s)	99, 133
BtrI	CACGTC	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	43, 259, 288
BveI	ACCTGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	417
CviJI	RGCY	5 cut(s)	99, 120, 133, 473, 507
CviKI_1	RGCY	5 cut(s)	99, 120, 133, 473, 507
DdeI	CTNAG	2 cut(s)	128, 444
DinI	GGCGCC	1 cut(s)	416
DpnI	GATC	5 cut(s)	21, 60, 126, 213, 449
DpnII	GATC	5 cut(s)	19, 58, 124, 211, 447
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	168
FaiI	YATR	5 cut(s)	96, 102, 206, 278, 402
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	474
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	99, 133
HapII	CCGG	2 cut(s)	376, 407
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	226, 328
HpaII	CCGG	2 cut(s)	376, 407
HphI	GGTGA	2 cut(s)	233, 280
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	147, 185, 386
Hpy188III	TCNNGA	5 cut(s)	56, 67, 215, 345, 434
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	397, 423
HpyCH4IV	ACGT	2 cut(s)	334, 524
HpyCH4V	TGCA	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	128, 444
HpySE526I	ACGT	2 cut(s)	334, 524
Hsp92I	GRCGYC	1 cut(s)	415
HspAI	GCGC	1 cut(s)	415
KasI	GGCGCC	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	19, 58, 124, 211, 447
LpnPI	CCDG	8 cut(s)	228, 247, 276, 294, 389, 420, 480, 506
Lsp1109I	GCAGC	1 cut(s)	460
MaeII	ACGT	2 cut(s)	334, 524
MaeIII	GTNAC	3 cut(s)	88, 109, 268
MalI	GATC	5 cut(s)	21, 60, 126, 213, 449
MboI	GATC	5 cut(s)	19, 58, 124, 211, 447
MboII	GAAGA	3 cut(s)	399, 455, 528
MflI	RGATCY	4 cut(s)	19, 124, 211, 447
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	187, 348
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	235, 337
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	33, 63, 100, 164, 249, 304, 352, 487, 489
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	8, 84
MslI	CAYNNNNRTG	1 cut(s)	409
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	2 cut(s)	376, 407
MspR9I	CCNGG	1 cut(s)	408
NarI	GGCGCC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	19, 58, 124, 211, 447
NlaIV	GGNNCC	2 cut(s)	213, 416
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	88, 268
OliI	CACNNNNGTG	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	2 cut(s)	234, 336
PluTI	GGCGCC	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	234, 336
PspN4I	GGNNCC	2 cut(s)	213, 416
PsuI	RGATCY	4 cut(s)	19, 124, 211, 447
RseI	CAYNNNNRTG	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	8, 84
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	19, 58, 124, 211, 447
SchI	GAGTC	2 cut(s)	235, 337
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	8 cut(s)	74, 90, 111, 200, 283, 315, 337, 527
SfoI	GGCGCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	83, 138
SmoI	CTYRAG	2 cut(s)	83, 138
Sse9I	AATT	2 cut(s)	187, 348
SseBI	AGGCCT	1 cut(s)	133
SspDI	GGCGCC	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	397, 423
TaiI	ACGT	2 cut(s)	337, 527
TasI	AATT	2 cut(s)	187, 348
Tru1I	TTAA	2 cut(s)	8, 84
Tru9I	TTAA	2 cut(s)	8, 84
TscAI	CASTG	3 cut(s)	43, 266, 295
TseFI	GTSAC	2 cut(s)	88, 268
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	88, 268
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	3 cut(s)	43, 266, 295
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	83
XapI	RAATTY	2 cut(s)	187, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.