Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Forward (+)

72039212 .. 72044326

Gene Structure 5115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0601700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGTCATTTATAACCCCCAATAAATTTTCAAATTTGAATCAGGTGCCAGACTGTTTAAGTAAAGTATCTTCATTCATTGCTGGGTACTTAATAGCATTTGTATTGATGTGGGATCTGGCCATTGTGGGACTCCCACTTGCTTTGCTTCTGATACTTCCCGGTTGGATCTGTGGAAGAAGTTTAACAGGATTAGCAAGAAAGAGAAGAGAAGAATGCATCAAGGCTGGATCAATAGCAGAGCAGGCAATATCATCCATTAGAACAGTTTATGCAGTTACTGGAGAGAACAACACTATATACCAATTCTCTGAAGCTCTACGAGGGACCATAAAGCTGGGGTTGAAGCAGGGCATGATTAAAGGTTTGGCCATTGGTAGCAGTACTGGCACAGCATTTGCCAATTGGGCTGTCATGTCTTATTATGGTAGCAGAAAGGTCATATCCTATGGTGCTCTAGGAGGGGCCATTTCAGCAGTTGGCCAGTTGATGGTCCATGGAGGAGCGGAAATGGGTGCTGCTTTATCGAATTTGAAGTACATTGCAGAAGCATGTTCAGCTGGGGATCATATCCTGGAGATTATTAATCGAGTTCCAGAGATTGATTTAGACAACATGGAAGGTGCAATTTTGGAGCATGTTACAAGCAAAGTTGAATTTAATCATGTGAAGTTTGCTTACCCCTCAAGACCTGAGAGCATCATCCTGAACAGATTCTGTCTAACCGTACCAGCAGGAAAAACTGTTGCGTTGGTGGGCTCAAGCGGATCAGGAAAATCCACAGTGATATCCCTCTTGCAAAGATTTTATGATCCACTTGAGGGAGAGATTCTCCTAAATGGAGTTGCTATTGATAAACTGCAGCTTAAGTGGCTAAGGTCACAAATGGCATCCGTAAGCCAAGAGCCTTCATTGTTCTCAACCTCCATTAAAGATAACATACTTCTAGGCAAGGAGGATGGTACAAGAGAGGAAATAGTTGAGGCAGCCAAAGCCAGCAACGCTCATGATTTTATATGTCAGTTGCCTCAAGGATATGATACCCAGGTTGGTGAGAGAGGCAGTCAAGTATCTGGCGGCCAAAAGCAGAGAATAGCTATTGCAAGAGCACTAATAAAGAAACCTCATATTCTTCTCCTTGATGAAGCCACAAGTGCATTAGACTCAGAGTCGGAAAGGCTTGTTCAAGAAGCCCTCCACAGGGCTGCCATGGGCAGAACTACCATTGTCATTGCACACCGCTTGTCCACAATTCGAAATGCTGATCTTATTGGTGTCATGCAAAATGGTTGTGTCATAGAAACCGGCTCACACGATGAACTGATTCAACACCAAAATGGACTGTACACTTCTTTTGTTCGTCTCCAACAAACAGAAACCCCAGAAGATCAATTTCAATGTACTGGTGCTAGTACTACTACTCTTCCAGTAATAGTGAGTCCGTTAAACTTGACCTCCCAGCTTGGTGGATCTGATAGTACTACTGCAAAAGAATATCCAAACATGGTCACACGAAAATCGTCAATTTGGAGATTGTTATCTATAACTTCTCCAGAGTGGAAACAAGCAATTTTGGGGTGTTTGAGTGCAATAATTTTTGGAGCAGTTCAACCCCTGTACGGACTCACCATGGGTACCACATTATCAGTGCTTTTCTCAACAAATCATTATGAGATCAAAGAGAGAATCAGGATTCTCGCCTTCTGTTTTCTTGGGTTGTCCCTTTTTGCATTGCTCATAAATATCATCCAACACTACAATTTCACATACATGGGGGAGTATTTGACCAATCGGATTAGAGAAACGTTGTTGTCAAAGATCCTCACTTTTGAAGTTGCATGGTTCGATGAGGTTCAAAATTCTAGCGGTGCCATTTGTGCTCAGCTCACCAAGGACGCTGAATTGGTGAGATCTTTAGCGGGTGACAGAATGGGTCTTCTTGTACAAACAATTTCTGCTGTAACTGTAGCATGGGCGATGGGTCTAATAATTGCATGGAGGCTTGCCATACTCATCATTGCCGTCCAACCCATAGTCATCCTCAGCCTCTATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGCCACCAAAGCCCAAGAGGAAAGTTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGGACCGTTACTGCCTTCTCGGCCCAGAACAGGATTTTGAAAATGCTAGACAAGGCCCAAGGAACCCCACGTAGAGAAAACCTGCGACAATCGTGGTTTGCAGGTATCGGACTCGGGTTCGCCGAGAGCATTACAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCAGCAGGGTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAAGTACCGGTCGGGTCATAGCAAATGCCGGAAGCATGACATCGGATCTTGCCATGGGCTTGGATGCAATCACGTCCATTTTTAGTATCTTAGACCGGACCACAAGAATCGAACCCCGAGCTCCAGAAGAAGCCCAGGTAGAAAAGACAACAGGTCATGTCCAATTCCGAAAGTCGACAGCATTGGTCGGACAAAGTGGATCAGGTAAGTCAACAGTCATCGCATTAATCAAGAGGTTCTATGATCCAAACCAAGGTGTAGTGGAAATAGACGGTCGAGATGTAAAATCATACCACCTTAGGTCATTGAGGAAACACATGGCATTAGTCAGCCAAGAGCCAATGTTATTTGCTGGGACCGTGAGAGAGAACATTGTATATGGCGCATCAGATAAGATTGATGAAATGATGATCATCGAGGCTGCAAGGAGTGCCAATGCTCATGATTTTATCAGTGGATTAATTGACGGAAAACCAGCAGTGTTGCTATTAGATGAAGCAACCAGCGCACTTGATAGTCAATCCGAGAAGGTATTGCAAGACTCGCTAGAGAGGTTGAGGACTAGTGTGGTTGTGGCTCACAGGTTAAGTACTATACAGAACTGTGAGCTCATTGTGGTGCTTGATCAAGGAAAGGTGGTGGAGAAAGGGACTCACTCTTCTCTTTTGTCCAAGGGGCCGACAGGCACTTATTACTCATTGATCAACCTCTCAAGAACGCAATCTTCAAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

1036

Amino Acids

113.19

Weight (kDa)

8.64

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	17 - 150	2e-18	ABC transporter transmembrane region
ABC_tran	PF00005	236 - 384	1.6e-32	ABC transporter
ABC_membrane	PF00664	523 - 790	1.6e-42	ABC transporter transmembrane region
ABC_tran	PF00005	847 - 927	1.3e-14	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
Acc36I	ACCTGC	2 cut(s)	2232, 2234
Acc65I	GGTACC	1 cut(s)	1631
AccB1I	GGYRCC	3 cut(s)	43, 1631, 1865
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	2549
AciI	CCGC	6 cut(s)	503, 762, 1074, 1237, 1863, 1916
AclI	AACGTT	1 cut(s)	1802
AcoI	YGGCCR	4 cut(s)	117, 366, 478, 1075
AcsI	RAATTY	5 cut(s)	23, 31, 526, 653, 1855
AcuI	CTGAAG	2 cut(s)	330, 2145
AfiI	CCNNNNNNNGG	7 cut(s)	487, 818, 1197, 1198, 1616, 2172, 2627
AflII	CTTAAG	1 cut(s)	863
AgeI	ACCGGT	1 cut(s)	2381
AhdI	GACNNNNNGTC	2 cut(s)	1165, 2526
AhlI	ACTAGT	1 cut(s)	2936
AjiI	CACGTC	1 cut(s)	2448
AjnI	CCWGG	3 cut(s)	570, 1041, 2508
Alw21I	GWGCWC	5 cut(s)	454, 1108, 1879, 2497, 2985
Alw26I	GTCTC	2 cut(s)	1364, 2351
AlwNI	CAGNNNCTG	2 cut(s)	278, 714
Ama87I	CYCGRG	2 cut(s)	2255, 2490
AoxI	GGCC	8 cut(s)	117, 366, 462, 478, 1075, 2163, 2196, 3050
ApeKI	GCWGC	7 cut(s)	515, 859, 983, 1202, 2120, 2310, 2795
ApoI	RAATTY	5 cut(s)	23, 31, 526, 653, 1855
AseI	ATTAAT	3 cut(s)	582, 2600, 2834
AsiGI	ACCGGT	1 cut(s)	2381
Asp700I	GAANNNNTTC	2 cut(s)	710, 1320
Asp718I	GGTACC	1 cut(s)	1631
AspLEI	GCGC	2 cut(s)	2759, 2882
AspS9I	GGNCC	9 cut(s)	324, 462, 490, 2145, 2164, 2197, 2472, 2730, 3050
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	5 cut(s)	1061, 1615, 1876, 1915, 1931
AsuII	TTCGAA	1 cut(s)	1252
AvaI	CYCGRG	2 cut(s)	2255, 2490
AvaII	GGWCC	5 cut(s)	324, 490, 2145, 2472, 2730
AxyI	CCTNAGG	1 cut(s)	2672
BaeI	ACNNNNGTAYC	2 cut(s)	1029, 1062
BalI	TGGCCA	3 cut(s)	119, 368, 480
BanI	GGYRCC	3 cut(s)	43, 1631, 1865
BanII	GRGCYC	3 cut(s)	758, 2497, 2985
BarI	GAAGNNNNNNTAC	4 cut(s)	52, 84, 659, 691
BbsI	GAAGAC	1 cut(s)	1925
Bbv12I	GWGCWC	5 cut(s)	454, 1108, 1879, 2497, 2985
BbvCI	CCTCAGC	1 cut(s)	2039
BbvI	GCAGC	7 cut(s)	502, 871, 995, 1189, 2132, 2322, 2782
BccI	CCATC	4 cut(s)	481, 950, 1969, 2087
BceAI	ACGGC	1 cut(s)	2003
BciT130I	CCWGG	3 cut(s)	572, 1043, 2510
BclI	TGATCA	3 cut(s)	2784, 2998, 3075
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	1364, 2351
BcuI	ACTAGT	1 cut(s)	2936
BfaI	CTAG	7 cut(s)	455, 944, 1407, 1860, 2189, 2921, 2937
BfmI	CTRYAG	2 cut(s)	857, 1962
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	2 cut(s)	2232, 2234
BglI	GCCNNNNNGGC	2 cut(s)	404, 2162
BglII	AGATCT	1 cut(s)	1907
BisI	GCNGC	8 cut(s)	516, 860, 984, 1075, 1203, 2121, 2311, 2796
BlpI	GCTNAGC	2 cut(s)	1878, 2052
BlsI	GCNGC	8 cut(s)	517, 861, 985, 1076, 1204, 2122, 2312, 2797
BmcAI	AGTACT	4 cut(s)	382, 1411, 1477, 2965
Bme1390I	CCNGG	4 cut(s)	159, 572, 1043, 2510
Bme18I	GGWCC	5 cut(s)	324, 490, 2145, 2472, 2730
BmeRI	GACNNNNNGTC	2 cut(s)	1165, 2526
BmeT110I	CYCGRG	2 cut(s)	2255, 2490
BmgBI	CACGTC	1 cut(s)	2448
BmgT120I	GGNCC	9 cut(s)	324, 462, 490, 2145, 2164, 2197, 2472, 2730, 3050
BmiI	GGNNCC	8 cut(s)	45, 325, 463, 1633, 1867, 2206, 2731, 3051
BmrFI	CCNGG	4 cut(s)	159, 572, 1043, 2510
BmsI	GCATC	5 cut(s)	225, 705, 896, 2428, 2768
BpiI	GAAGAC	1 cut(s)	1925
BplI	GAGNNNNNCTC	2 cut(s)	813, 845
BpmI	CTGGAG	4 cut(s)	300, 593, 1533, 2481
Bpu10I	CCTNAGC	2 cut(s)	872, 2039
Bpu1102I	GCTNAGC	2 cut(s)	1878, 2052
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	5 cut(s)	667, 742, 836, 1011, 3070
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	2213
BsaBI	GATNNNNATC	2 cut(s)	1534, 2786
BsaWI	WCCGGW	3 cut(s)	2142, 2381, 2469
BsaXI	ACNNNNNCTCC	2 cut(s)	1436, 1466
Bsc4I	CCNNNNNNNGG	7 cut(s)	487, 818, 1197, 1198, 1616, 2172, 2627
Bse118I	RCCGGY	2 cut(s)	1301, 2381
Bse1I	ACTGG	5 cut(s)	283, 388, 481, 1405, 1424
Bse21I	CCTNAGG	1 cut(s)	2672
Bse3DI	GCAATG	5 cut(s)	75, 537, 1227, 1727, 2013
Bse8I	GATNNNNATC	2 cut(s)	1534, 2786
BseBI	CCWGG	3 cut(s)	572, 1043, 2510
BseGI	GGATG	7 cut(s)	251, 699, 887, 961, 1743, 2034, 2443
BseJI	GATNNNNATC	2 cut(s)	1534, 2786
BseLI	CCNNNNNNNGG	7 cut(s)	487, 818, 1197, 1198, 1616, 2172, 2627
BseMI	GCAATG	5 cut(s)	75, 537, 1227, 1727, 2013
BseMII	CTCAG	5 cut(s)	681, 1176, 1892, 2053, 2285
BseNI	ACTGG	5 cut(s)	283, 388, 481, 1405, 1424
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	7 cut(s)	502, 871, 995, 1189, 2132, 2322, 2782
BseYI	CCCAGC	5 cut(s)	80, 334, 557, 1455, 2726
Bsh1285I	CGRYCG	2 cut(s)	2386, 2650
BshFI	GGCC	8 cut(s)	119, 368, 464, 480, 1077, 2165, 2198, 3052
BshNI	GGYRCC	3 cut(s)	43, 1631, 1865
BshTI	ACCGGT	1 cut(s)	2381
BsiEI	CGRYCG	2 cut(s)	2386, 2650
BsiHKAI	GWGCWC	5 cut(s)	454, 1108, 1879, 2497, 2985
BsiHKCI	CYCGRG	2 cut(s)	2255, 2490
BsiSI	CCGG	6 cut(s)	159, 1302, 2143, 2382, 2403, 2470
BslFI	GGGAC	5 cut(s)	141, 337, 1702, 2743, 3037
BslI	CCNNNNNNNGG	7 cut(s)	487, 818, 1197, 1198, 1616, 2172, 2627
BsmAI	GTCTC	2 cut(s)	1364, 2351
BsmBI	CGTCTC	1 cut(s)	1364
BsmFI	GGGAC	5 cut(s)	141, 337, 1702, 2743, 3037
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	8 cut(s)	119, 368, 464, 480, 1077, 2165, 2198, 3052
BsoBI	CYCGRG	2 cut(s)	2255, 2490
Bsp119I	TTCGAA	1 cut(s)	1252
Bsp1286I	GDGCHC	6 cut(s)	454, 758, 1108, 1879, 2497, 2985
Bsp1407I	TGTACA	2 cut(s)	1341, 1939
Bsp1720I	GCTNAGC	2 cut(s)	1878, 2052
Bsp19I	CCATGG	4 cut(s)	493, 1206, 1626, 2427
BspACI	CCGC	6 cut(s)	503, 762, 1074, 1237, 1863, 1916
BspANI	GGCC	8 cut(s)	119, 368, 464, 480, 1077, 2165, 2198, 3052
BspCNI	CTCAG	5 cut(s)	682, 1175, 1891, 2052, 2286
BspHI	TCATGA	2 cut(s)	1003, 2815
BspLI	GGNNCC	8 cut(s)	45, 325, 463, 1633, 1867, 2206, 2731, 3051
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	2 cut(s)	2232, 2234
BspT104I	TTCGAA	1 cut(s)	1252
BspT107I	GGYRCC	3 cut(s)	43, 1631, 1865
BspTI	CTTAAG	1 cut(s)	863
BsrBI	CCGCTC	1 cut(s)	503
BsrDI	GCAATG	5 cut(s)	75, 537, 1227, 1727, 2013
BsrFI	RCCGGY	2 cut(s)	1301, 2381
BsrGI	TGTACA	2 cut(s)	1341, 1939
BsrI	ACTGG	5 cut(s)	283, 388, 481, 1405, 1424
BssAI	RCCGGY	2 cut(s)	1301, 2381
BssT1I	CCWWGG	9 cut(s)	493, 1206, 1626, 1887, 2200, 2326, 2427, 2626, 3045
Bst2UI	CCWGG	3 cut(s)	572, 1043, 2510
Bst6I	CTCTTC	3 cut(s)	199, 1425, 3037
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	2804
BstAUI	TGTACA	2 cut(s)	1341, 1939
BstBAI	YACGTR	1 cut(s)	2213
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	4 cut(s)	243, 994, 2001, 2118
BstDEI	CTNAG	9 cut(s)	690, 872, 1162, 1878, 2039, 2052, 2294, 2464, 2672
BstDSI	CCRYGG	4 cut(s)	493, 1206, 1626, 2427
BstF5I	GGATG	7 cut(s)	251, 699, 887, 961, 1743, 2034, 2443
BstHHI	GCGC	2 cut(s)	2759, 2882
BstMAI	GTCTC	2 cut(s)	1364, 2351
BstMCI	CGRYCG	2 cut(s)	2386, 2650
BstNI	CCWGG	3 cut(s)	572, 1043, 2510
BstNSI	RCATGY	2 cut(s)	552, 638
BstSCI	CCNGG	4 cut(s)	157, 570, 1041, 2508
BstSFI	CTRYAG	2 cut(s)	857, 1962
BstV1I	GCAGC	7 cut(s)	502, 871, 995, 1189, 2132, 2322, 2782
BstV2I	GAAGAC	1 cut(s)	1925
BstX2I	RGATCY	6 cut(s)	112, 165, 1466, 1815, 1907, 2419
BstXI	CCANNNNNNTGG	3 cut(s)	334, 1463, 2434
BstYI	RGATCY	6 cut(s)	112, 165, 1466, 1815, 1907, 2419
Bsu36I	CCTNAGG	1 cut(s)	2672
BsuRI	GGCC	8 cut(s)	119, 368, 464, 480, 1077, 2165, 2198, 3052
BtgI	CCRYGG	4 cut(s)	493, 1206, 1626, 2427
BtgZI	GCGATG	2 cut(s)	1988, 2578
BtrI	CACGTC	1 cut(s)	2448
BtsCI	GGATG	7 cut(s)	251, 699, 887, 961, 1743, 2034, 2443
BtsI	GCAGTG	1 cut(s)	2859
BtsIMutI	CAGTG	4 cut(s)	786, 1650, 2833, 2859
BveI	ACCTGC	2 cut(s)	2232, 2234
Cac8I	GCNNGC	4 cut(s)	243, 994, 2001, 2118
CaiI	CAGNNNCTG	2 cut(s)	278, 714
CciI	TCATGA	2 cut(s)	1003, 2815
CfoI	GCGC	2 cut(s)	2759, 2882
Cfr10I	RCCGGY	2 cut(s)	1301, 2381
Cfr13I	GGNCC	9 cut(s)	324, 462, 490, 2145, 2164, 2197, 2472, 2730, 3050
CpoI	CGGWCCG	1 cut(s)	2145
CseI	GACGC	1 cut(s)	1901
CspAI	ACCGGT	1 cut(s)	2381
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CspI	CGGWCCG	1 cut(s)	2145
DdeI	CTNAG	9 cut(s)	690, 872, 1162, 1878, 2039, 2052, 2294, 2464, 2672
DriI	GACNNNNNGTC	2 cut(s)	1165, 2526
EaeI	YGGCCR	4 cut(s)	117, 366, 478, 1075
Eam1104I	CTCTTC	3 cut(s)	199, 1425, 3037
Eam1105I	GACNNNNNGTC	2 cut(s)	1165, 2526
EarI	CTCTTC	3 cut(s)	199, 1425, 3037
Ecl136II	GAGCTC	2 cut(s)	2495, 2983
Eco130I	CCWWGG	9 cut(s)	493, 1206, 1626, 1887, 2200, 2326, 2427, 2626, 3045
Eco24I	GRGCYC	3 cut(s)	758, 2497, 2985
Eco32I	GATATC	1 cut(s)	786
Eco47I	GGWCC	5 cut(s)	324, 490, 2145, 2472, 2730
Eco53kI	GAGCTC	2 cut(s)	2495, 2983
Eco57I	CTGAAG	2 cut(s)	330, 2145
Eco81I	CCTNAGG	1 cut(s)	2672
Eco88I	CYCGRG	2 cut(s)	2255, 2490
EcoICRI	GAGCTC	2 cut(s)	2495, 2983
EcoRII	CCWGG	3 cut(s)	570, 1041, 2508
EcoRV	GATATC	1 cut(s)	786
EcoT14I	CCWWGG	9 cut(s)	493, 1206, 1626, 1887, 2200, 2326, 2427, 2626, 3045
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	3 cut(s)	758, 2497, 2985
ErhI	CCWWGG	9 cut(s)	493, 1206, 1626, 1887, 2200, 2326, 2427, 2626, 3045
Esp3I	CGTCTC	1 cut(s)	1364
FalI	AAGNNNNNCTT	2 cut(s)	2319, 2351
FaqI	GGGAC	5 cut(s)	141, 337, 1702, 2743, 3037
FauI	CCCGC	1 cut(s)	1909
FbaI	TGATCA	3 cut(s)	2784, 2998, 3075
FblI	GTMKAC	1 cut(s)	2549
Fnu4HI	GCNGC	8 cut(s)	516, 860, 984, 1075, 1203, 2121, 2311, 2796
FokI	GGATG	7 cut(s)	238, 686, 874, 968, 1730, 2021, 2450
FriOI	GRGCYC	3 cut(s)	758, 2497, 2985
Fsp4HI	GCNGC	8 cut(s)	516, 860, 984, 1075, 1203, 2121, 2311, 2796
FspBI	CTAG	7 cut(s)	455, 944, 1407, 1860, 2189, 2921, 2937
GlaI	GCGC	2 cut(s)	2758, 2881
GluI	GCNGC	8 cut(s)	516, 860, 984, 1075, 1203, 2121, 2311, 2796
GsaI	CCCAGC	5 cut(s)	84, 338, 561, 1459, 2730
GsuI	CTGGAG	4 cut(s)	300, 593, 1533, 2481
HaeIII	GGCC	8 cut(s)	119, 368, 464, 480, 1077, 2165, 2198, 3052
HapII	CCGG	6 cut(s)	159, 1302, 2143, 2382, 2403, 2470
HgaI	GACGC	1 cut(s)	1901
HhaI	GCGC	2 cut(s)	2759, 2882
Hin6I	GCGC	2 cut(s)	2757, 2880
HinP1I	GCGC	2 cut(s)	2757, 2880
HincII	GTYRAC	2 cut(s)	2550, 2586
HindII	GTYRAC	2 cut(s)	2550, 2586
HindIII	AAGCTT	1 cut(s)	2114
HpaII	CCGG	6 cut(s)	159, 1302, 2143, 2382, 2403, 2470
HphI	GGTGA	5 cut(s)	1061, 1615, 1876, 1915, 1931
Hpy166II	GTNNAC	5 cut(s)	1245, 1344, 2323, 2550, 2586
Hpy8I	GTNNAC	5 cut(s)	1245, 1344, 2323, 2550, 2586
HpyAV	CCTTC	5 cut(s)	611, 915, 1708, 2167, 2896
HpyCH4IV	ACGT	3 cut(s)	1802, 2212, 2447
HpyF3I	CTNAG	9 cut(s)	690, 872, 1162, 1878, 2039, 2052, 2294, 2464, 2672
HpySE526I	ACGT	3 cut(s)	1802, 2212, 2447
HspAI	GCGC	2 cut(s)	2757, 2880
KpnI	GGTACC	1 cut(s)	1635
Ksp22I	TGATCA	3 cut(s)	2784, 2998, 3075
LmnI	GCTCC	4 cut(s)	500, 631, 1598, 2500
Lsp1109I	GCAGC	7 cut(s)	502, 871, 995, 1189, 2132, 2322, 2782
LweI	GCATC	5 cut(s)	225, 705, 896, 2428, 2768
MaeI	CTAG	7 cut(s)	455, 944, 1407, 1860, 2189, 2921, 2937
MaeII	ACGT	3 cut(s)	1802, 2212, 2447
MaeIII	GTNAC	7 cut(s)	274, 637, 876, 1504, 1919, 1957, 2149
MbiI	CCGCTC	1 cut(s)	503
MfeI	CAATTG	2 cut(s)	400, 2284
MflI	RGATCY	6 cut(s)	112, 165, 1466, 1815, 1907, 2419
MhlI	GDGCHC	6 cut(s)	454, 758, 1108, 1879, 2497, 2985
MlsI	TGGCCA	3 cut(s)	119, 368, 480
MluNI	TGGCCA	3 cut(s)	119, 368, 480
MlyI	GAGTC	8 cut(s)	123, 1154, 1175, 1444, 1614, 2247, 2909, 3019
MmeI	TCCRAC	6 cut(s)	143, 1149, 1387, 1771, 2047, 2542
Mox20I	TGGCCA	3 cut(s)	119, 368, 480
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	2 cut(s)	710, 1320
MscI	TGGCCA	3 cut(s)	119, 368, 480
MslI	CAYNNNNRTG	3 cut(s)	1332, 1766, 2990
Msp20I	TGGCCA	3 cut(s)	119, 368, 480
MspA1I	CMGCKG	2 cut(s)	557, 2123
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	6 cut(s)	159, 1302, 2143, 2382, 2403, 2470
MspR9I	CCNGG	4 cut(s)	159, 572, 1043, 2510
MunI	CAATTG	2 cut(s)	400, 2284
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	3 cut(s)	572, 1043, 2510
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	4 cut(s)	493, 1206, 1626, 2427
NlaIV	GGNNCC	8 cut(s)	45, 325, 463, 1633, 1867, 2206, 2731, 3051
NmeAIII	GCCGAG	2 cut(s)	2141, 2290
NmuCI	GTSAC	3 cut(s)	876, 1504, 1919
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	2 cut(s)	552, 638
NspV	TTCGAA	1 cut(s)	1252
PagI	TCATGA	2 cut(s)	1003, 2815
PcsI	WCGNNNNNNNCGW	1 cut(s)	2262
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	2 cut(s)	710, 1320
PfeI	GAWTC	7 cut(s)	37, 711, 826, 1321, 1683, 1690, 2481
PflMI	CCANNNNNTGG	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	570
PinAI	ACCGGT	1 cut(s)	2381
PkrI	GCNGC	8 cut(s)	517, 861, 985, 1076, 1204, 2122, 2312, 2797
PleI	GAGTC	8 cut(s)	123, 1154, 1174, 1443, 1614, 2247, 2909, 3019
PpsI	GAGTC	8 cut(s)	123, 1154, 1174, 1443, 1614, 2247, 2909, 3019
Ppu21I	YACGTR	1 cut(s)	2213
PshBI	ATTAAT	3 cut(s)	582, 2600, 2834
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	2 cut(s)	2497, 2985
Psp1406I	AACGTT	1 cut(s)	1802
Psp6I	CCWGG	3 cut(s)	570, 1041, 2508
PspFI	CCCAGC	5 cut(s)	80, 334, 557, 1455, 2726
PspGI	CCWGG	3 cut(s)	570, 1041, 2508
PspN4I	GGNNCC	8 cut(s)	45, 325, 463, 1633, 1867, 2206, 2731, 3051
PspPI	GGNCC	9 cut(s)	324, 462, 490, 2145, 2164, 2197, 2472, 2730, 3050
PstI	CTGCAG	1 cut(s)	861
PstNI	CAGNNNCTG	2 cut(s)	278, 714
PsuI	RGATCY	6 cut(s)	112, 165, 1466, 1815, 1907, 2419
PvuII	CAGCTG	2 cut(s)	557, 2123
RseI	CAYNNNNRTG	3 cut(s)	1332, 1766, 2990
Rsr2I	CGGWCCG	1 cut(s)	2145
RsrII	CGGWCCG	1 cut(s)	2145
SacI	GAGCTC	2 cut(s)	2497, 2985
SalI	GTCGAC	1 cut(s)	2548
SatI	GCNGC	8 cut(s)	516, 860, 984, 1075, 1203, 2121, 2311, 2796
Sau96I	GGNCC	9 cut(s)	324, 462, 490, 2145, 2164, 2197, 2472, 2730, 3050
ScaI	AGTACT	4 cut(s)	382, 1411, 1477, 2965
SchI	GAGTC	8 cut(s)	123, 1154, 1175, 1444, 1614, 2247, 2909, 3019
ScrFI	CCNGG	4 cut(s)	159, 572, 1043, 2510
SduI	GDGCHC	6 cut(s)	454, 758, 1108, 1879, 2497, 2985
SfaNI	GCATC	5 cut(s)	225, 705, 896, 2428, 2768
SfcI	CTRYAG	2 cut(s)	857, 1962
SfuI	TTCGAA	1 cut(s)	1252
SinI	GGWCC	5 cut(s)	324, 490, 2145, 2472, 2730
SmiMI	CAYNNNNRTG	3 cut(s)	1332, 1766, 2990
SmlI	CTYRAG	6 cut(s)	682, 757, 815, 863, 1026, 3085
SmoI	CTYRAG	6 cut(s)	682, 757, 815, 863, 1026, 3085
SpeI	ACTAGT	1 cut(s)	2936
SsiI	CCGC	6 cut(s)	503, 762, 1074, 1237, 1863, 1916
SspMI	CTAG	7 cut(s)	455, 944, 1407, 1860, 2189, 2921, 2937
SstI	GAGCTC	2 cut(s)	2497, 2985
StyD4I	CCNGG	4 cut(s)	157, 570, 1041, 2508
StyI	CCWWGG	9 cut(s)	493, 1206, 1626, 1887, 2200, 2326, 2427, 2626, 3045
TaiI	ACGT	3 cut(s)	1805, 2215, 2450
TaqI	TCGA	8 cut(s)	524, 586, 1252, 1842, 2484, 2549, 2650, 2790
TatI	WGTACW	8 cut(s)	380, 534, 1341, 1397, 1409, 1475, 1939, 2963
TauI	GCSGC	1 cut(s)	1077
TfiI	GAWTC	7 cut(s)	37, 711, 826, 1321, 1683, 1690, 2481
TscAI	CASTG	4 cut(s)	786, 1650, 2833, 2859
TseFI	GTSAC	3 cut(s)	876, 1504, 1919
TseI	GCWGC	7 cut(s)	515, 859, 983, 1202, 2120, 2310, 2795
Tsp45I	GTSAC	3 cut(s)	876, 1504, 1919
TspDTI	ATGAA	7 cut(s)	60, 64, 897, 1155, 1329, 2790, 2883
TspGWI	ACGGA	4 cut(s)	880, 1428, 1632, 2856
TspRI	CASTG	4 cut(s)	786, 1650, 2833, 2859
Van91I	CCANNNNNTGG	1 cut(s)	487
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	5 cut(s)	324, 490, 2145, 2472, 2730
VspI	ATTAAT	3 cut(s)	582, 2600, 2834
XapI	RAATTY	5 cut(s)	23, 31, 526, 653, 1855
XceI	RCATGY	2 cut(s)	552, 638
XmiI	GTMKAC	1 cut(s)	2549
XmnI	GAANNNNTTC	2 cut(s)	710, 1320
XspI	CTAG	7 cut(s)	455, 944, 1407, 1860, 2189, 2921, 2937
ZrmI	AGTACT	4 cut(s)	382, 1411, 1477, 2965
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.