Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

22880359 .. 22883961

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCTCGGGACAGGGACCCCCTTGTTGTTGGACGAGTGGTAGGTGATGTTTTAGACCCCTTCACAAGGTCCGTTTCTCTGAGGGTGACCTACGGCAATAAGGAGGTTAACAATGGTTGTGAGCTCAAACCTTCTCAAGTTGTCCAGCAACCTAGAGTTGATACTGGTGGTGACGATCTCAGGACTTTCTACACTCTGGTCATGGTGGATCCTGATGCACCCAGCCCAAGTGACCCCAACCTAAAGGAATATTTGCATTGGTTGGTTACGGATATTCCAGCAACAACCGCGGCAAGCTTCGGGCAAGAGATCGTGTGTTACGAAAGTCCACGGCCAACAGTTGGGATTCATCGCTTTGTTTTTGTGCTGTTTCGCCAATTGGGTAGGCAAACAGTGTATGCTCCTGGATGGCGCCAAAACTTCAATACCAAAGACTTCGCCGAGCTTTATAATCTTGGATTACCGGTGGCTGCCGTCTATTTTAACTGCCAAAGGGAGAGCGGCTCCGGTGGGAGGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

175

Amino Acids

19.57

Weight (kDa)

7.71

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	501
AccII	CGCG	1 cut(s)	290
AciI	CCGC	3 cut(s)	288, 290, 501
AclWI	GGATC	2 cut(s)	203, 216
AcoI	YGGCCR	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	66, 341, 513
AgeI	ACCGGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	3 cut(s)	124, 297, 445
AluI	AGCT	3 cut(s)	124, 297, 445
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	203, 216
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	470
AsiGI	ACCGGT	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	16, 69
AsuHPI	GGTGA	3 cut(s)	56, 97, 182
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	16, 69
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	3 cut(s)	109, 347, 458
BciT130I	CCWGG	1 cut(s)	405
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	3 cut(s)	291, 471, 502
BlsI	GCNGC	3 cut(s)	292, 472, 503
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	16, 69
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	16, 69
BmiI	GGNNCC	5 cut(s)	17, 18, 210, 413, 505
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpuEI	CTTGAG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	5, 288, 329
BsaWI	WCCGGW	2 cut(s)	463, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 341, 513
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	5, 288, 329
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	3 cut(s)	66, 341, 513
BseMII	CTCAG	2 cut(s)	71, 193
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	464, 507
BslFI	GGGAC	2 cut(s)	23, 29
BslI	CCNNNNNNNGG	3 cut(s)	66, 341, 513
BsmFI	GGGAC	2 cut(s)	23, 29
BsnI	GGCC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	175, 208, 309
BspACI	CCGC	3 cut(s)	288, 290, 501
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	72, 192
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	5 cut(s)	17, 18, 210, 413, 505
BspPI	GGATC	2 cut(s)	203, 216
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	5, 288, 329
BssMI	GATC	3 cut(s)	175, 208, 309
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	340, 394
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	80, 179
BstDSI	CCRYGG	2 cut(s)	288, 329
BstEII	GGTNACC	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	178, 211, 312
BstMBI	GATC	3 cut(s)	175, 208, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	2 cut(s)	288, 329
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	16, 69
Cfr42I	CCGCGG	1 cut(s)	291
CspAI	ACCGGT	1 cut(s)	463
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	124, 225, 297, 334, 445, 470, 504
CviKI_1	RGCY	7 cut(s)	124, 225, 297, 334, 445, 470, 504
DdeI	CTNAG	2 cut(s)	80, 179
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	3 cut(s)	177, 210, 311
DpnII	GATC	3 cut(s)	175, 208, 309
EaeI	YGGCCR	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	16, 69
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	203, 399, 450
FaqI	GGGAC	2 cut(s)	23, 29
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	291, 471, 502
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	291, 471, 502
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	3 cut(s)	291, 471, 502
GsaI	CCCAGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	2 cut(s)	464, 507
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	1 cut(s)	346
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	2 cut(s)	464, 507
HphI	GGTGA	3 cut(s)	56, 97, 182
Hpy166II	GTNNAC	2 cut(s)	109, 329
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	8, 181, 212
Hpy8I	GTNNAC	2 cut(s)	109, 329
HpyAV	CCTTC	2 cut(s)	70, 141
HpyCH4III	ACNGT	2 cut(s)	340, 394
HpyCH4V	TGCA	2 cut(s)	218, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	80, 179
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
KflI	GGGWCCC	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	109
KspI	CCGCGG	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	175, 208, 309
LmnI	GCTCC	2 cut(s)	406, 509
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	5 cut(s)	85, 170, 230, 265, 317
MalI	GATC	3 cut(s)	177, 210, 311
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	3 cut(s)	175, 208, 309
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	15, 75, 97, 507
MseI	TTAA	2 cut(s)	108, 483
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	464, 507
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	287
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	3 cut(s)	175, 208, 309
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	5 cut(s)	17, 18, 210, 413, 505
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	3 cut(s)	85, 170, 230
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	292, 472, 503
PluTI	GGCGCC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	5 cut(s)	17, 18, 210, 413, 505
PspPI	GGNCC	2 cut(s)	16, 69
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	126
SacII	CCGCGG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	108, 483
SatI	GCNGC	3 cut(s)	291, 471, 502
Sau3AI	GATC	3 cut(s)	175, 208, 309
Sau96I	GGNCC	2 cut(s)	16, 69
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	413
Sfr303I	CCGCGG	1 cut(s)	291
SgrBI	CCGCGG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	16, 69
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	3 cut(s)	288, 290, 501
SspDI	GGCGCC	1 cut(s)	411
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	340, 394
TasI	AATT	1 cut(s)	377
TauI	GCSGC	2 cut(s)	293, 504
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	2 cut(s)	108, 483
Tru9I	TTAA	2 cut(s)	108, 483
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	3 cut(s)	85, 170, 230
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	85, 170, 230
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	2 cut(s)	61, 284
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	16, 69
XagI	CCTNNNNNAGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.