Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Forward (+)

46661478 .. 46663000

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCCAGGGACAGGGACCCCCTTGTTGTGGGAAGAGTCATAGGGGATGTTTTGGACCCCTTTACAAGGTCTGTTTCTCTCCGGGTGACTTTCGCTACTAGGGAGGTTAACAATGGTTGTGAGCTCAAACCTTCCCAAGTTGTCACCCAACCTCGAGTTGATATAGGAGGGGAGGATCTTAGGACCTTCTATACTCTGGTCATGGTGGATCCAGATGCCCCCAGCCCAAGTGACCCCAACCTGAAAGAATATTTGCATTGGTTAGTCACTGATATTCCTGCAACAACTGGGGCAAGTTTCGGCCAAGAGATTGTGTGTTATGAAAGTCCACGGCCAACAGTGGGGATTCATCGCTTTGTTTTTGTGTTGTTCCGGCAATTGGGAAGGCAAACTGTGTATGCTCCAGGATGGCGCCAAAACTTTAACACCAGAGACTTTGCCGAGCTCTACAATCTTGGATCACCAGTGGCTGCGGTTTACTTTAACTGCCAAAGGGAAAGTGGCTCCGGCGGAAGGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

174

Amino Acids

19.58

Weight (kDa)

7.73

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	60 - 146	9.1e-12	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AciI	CCGC	2 cut(s)	473, 510
AclWI	GGATC	4 cut(s)	183, 203, 216, 466
AcoI	YGGCCR	2 cut(s)	301, 332
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	6 cut(s)	12, 28, 66, 341, 379, 513
AjnI	CCWGG	2 cut(s)	5, 403
AluBI	AGCT	2 cut(s)	124, 445
AluI	AGCT	2 cut(s)	124, 445
Alw21I	GWGCWC	2 cut(s)	126, 447
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	4 cut(s)	183, 203, 216, 466
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	301, 332
ApeKI	GCWGC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	16, 55, 183
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	97, 136, 453
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	3 cut(s)	16, 55, 183
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	2 cut(s)	126, 447
Bbv12I	GWGCWC	2 cut(s)	126, 447
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	7, 405
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	7, 83, 405
Bme18I	GGWCC	3 cut(s)	16, 55, 183
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	16, 55, 183
BmiI	GGNNCC	6 cut(s)	17, 18, 57, 210, 413, 505
BmrFI	CCNGG	3 cut(s)	7, 83, 405
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	5, 6, 329
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 28, 66, 341, 379, 513
Bse1I	ACTGG	2 cut(s)	292, 464
BseBI	CCWGG	2 cut(s)	7, 405
BseDI	CCNNGG	3 cut(s)	5, 6, 329
BseGI	GGATG	2 cut(s)	52, 413
BseLI	CCNNNNNNNGG	6 cut(s)	12, 28, 66, 341, 379, 513
BseNI	ACTGG	2 cut(s)	292, 464
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	2 cut(s)	303, 334
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	126, 447
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	82, 373, 507
BslFI	GGGAC	2 cut(s)	23, 29
BslI	CCNNNNNNNGG	6 cut(s)	12, 28, 66, 341, 379, 513
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	23, 29
BsnI	GGCC	2 cut(s)	303, 334
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	126, 447
Bsp143I	GATC	3 cut(s)	175, 208, 458
BspACI	CCGC	2 cut(s)	473, 510
BspANI	GGCC	2 cut(s)	303, 334
BspLI	GGNNCC	6 cut(s)	17, 18, 57, 210, 413, 505
BspPI	GGATC	4 cut(s)	183, 203, 216, 466
BspT107I	GGYRCC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	292, 464
BssECI	CCNNGG	3 cut(s)	5, 6, 329
BssMI	GATC	3 cut(s)	175, 208, 458
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	7, 405
Bst4CI	ACNGT	2 cut(s)	340, 394
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	329
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	52, 413
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	178, 211, 461
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	3 cut(s)	175, 208, 458
BstNI	CCWGG	2 cut(s)	7, 405
BstSCI	CCNGG	3 cut(s)	5, 81, 403
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	175, 208
BstYI	RGATCY	2 cut(s)	175, 208
BsuRI	GGCC	2 cut(s)	303, 334
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	52, 413
BtsIMutI	CAGTG	3 cut(s)	267, 345, 471
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	16, 55, 183
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	124, 225, 303, 334, 445, 470, 504
CviKI_1	RGCY	7 cut(s)	124, 225, 303, 334, 445, 470, 504
DdeI	CTNAG	1 cut(s)	179
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	3 cut(s)	177, 210, 460
DpnII	GATC	3 cut(s)	175, 208, 458
EaeI	YGGCCR	2 cut(s)	301, 332
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	525
Ecl136II	GAGCTC	2 cut(s)	124, 445
Eco24I	GRGCYC	2 cut(s)	126, 447
Eco47I	GGWCC	3 cut(s)	16, 55, 183
Eco53kI	GAGCTC	2 cut(s)	124, 445
Eco88I	CYCGRG	1 cut(s)	153
EcoICRI	GAGCTC	2 cut(s)	124, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	16, 183
EcoRII	CCWGG	2 cut(s)	5, 403
EcoT38I	GRGCYC	2 cut(s)	126, 447
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	1 cut(s)	205
FaiI	YATR	6 cut(s)	41, 164, 192, 203, 321, 399
FaqI	GGGAC	2 cut(s)	23, 29
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	59, 420
FriOI	GRGCYC	2 cut(s)	126, 447
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	303, 334
HapII	CCGG	3 cut(s)	82, 373, 507
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	36, 346
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	3 cut(s)	82, 373, 507
HphI	GGTGA	3 cut(s)	97, 136, 453
Hpy166II	GTNNAC	3 cut(s)	109, 329, 478
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	3 cut(s)	109, 329, 478
HpyAV	CCTTC	4 cut(s)	141, 196, 378, 507
HpyCH4III	ACNGT	2 cut(s)	340, 394
HpyCH4V	TGCA	2 cut(s)	256, 281
HpyF3I	CTNAG	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
KflI	GGGWCCC	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	175, 208, 458
LmnI	GCTCC	2 cut(s)	406, 509
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	85, 142, 230, 265
MalI	GATC	3 cut(s)	177, 210, 460
MboI	GATC	3 cut(s)	175, 208, 458
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	2 cut(s)	175, 208
MhlI	GDGCHC	2 cut(s)	126, 447
MluCI	AATT	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	97, 161, 162, 166
MseI	TTAA	3 cut(s)	108, 423, 483
MspI	CCGG	3 cut(s)	82, 373, 507
MspR9I	CCNGG	3 cut(s)	7, 83, 405
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	7, 405
NarI	GGCGCC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	175, 208, 458
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	6 cut(s)	17, 18, 57, 210, 413, 505
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	4 cut(s)	85, 142, 230, 265
PaeR7I	CTCGAG	1 cut(s)	153
PasI	CCCWGGG	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	2 cut(s)	16, 183
Psp124BI	GAGCTC	2 cut(s)	126, 447
Psp5II	RGGWCCY	2 cut(s)	16, 183
Psp6I	CCWGG	2 cut(s)	5, 403
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	5, 403
PspN4I	GGNNCC	6 cut(s)	17, 18, 57, 210, 413, 505
PspPI	GGNCC	3 cut(s)	16, 55, 183
PspPPI	RGGWCCY	2 cut(s)	16, 183
PspXI	VCTCGAGB	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	175, 208
SacI	GAGCTC	2 cut(s)	126, 447
SaqAI	TTAA	3 cut(s)	108, 423, 483
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	175, 208, 458
Sau96I	GGNCC	3 cut(s)	16, 55, 183
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	3 cut(s)	7, 83, 405
SduI	GDGCHC	2 cut(s)	126, 447
SetI	ASST	8 cut(s)	71, 108, 126, 133, 154, 188, 243, 447
SfaNI	GCATC	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	3 cut(s)	16, 55, 183
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	473, 510
SspDI	GGCGCC	1 cut(s)	411
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	2 cut(s)	126, 447
StyD4I	CCNGG	3 cut(s)	5, 81, 403
TaaI	ACNGT	2 cut(s)	340, 394
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	3 cut(s)	108, 423, 483
Tru9I	TTAA	3 cut(s)	108, 423, 483
TscAI	CASTG	3 cut(s)	274, 345, 471
TseFI	GTSAC	4 cut(s)	85, 142, 230, 265
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	4 cut(s)	85, 142, 230, 265
TspDTI	ATGAA	2 cut(s)	336, 338
TspRI	CASTG	3 cut(s)	274, 345, 471
VpaK11BI	GGWCC	3 cut(s)	16, 55, 183
XagI	CCTNNNNNAGG	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.