Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00270

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

269351 .. 270844

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTTAAAACTATGCCTAGGGCTAGAGATCGGGAGCCTCTTGTTGTCGGGAGAGTGATCGGAGATGTTCTCGACCCGTTTACGAAGTCTGTGTCTTTGAGGATGACTTACAGTAATAACAGGGAGGTTACCAGTGGTTGTGAGCTTAAACCTTCTCATGTTGTTAACCGACCTCGCGTTGAGATAGGGGGAGATGATCTTAGGACTTTCTACACTCTGGTCATGGTAGATCCTGATGCACCCAGTCCAAGTGATCCTAACCTCAAGGAATATTTGCATTGGTTGGTGACTGATATTCCAGCAACAACTGCAGCAAGCTTTGGCCGAGAGCTTGTGAGCTATGAAACTCCACGGCCAGCGATGGGGATCCATCGCTTTGTTTCAGTTTTGTTTCGCCAATTGGGTAGGCAAACAGTATATGCTCCAGAATGGCGCCAAAATTTTAACACCAGAGAGTTTGCTGAGAACTATAATCTTGGATCACCGGTGGCCGCTGTCTATTATAACTGCCAAAGGGAGAGCGGCTCTGGTGGAAGGAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

181

Amino Acids

20.5

Weight (kDa)

8.97

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	58 - 167	2e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	522
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	492, 522
AclWI	GGATC	5 cut(s)	224, 248, 361, 374, 487
AcoI	YGGCCR	3 cut(s)	322, 353, 489
AcsI	RAATTY	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	484
AluBI	AGCT	4 cut(s)	145, 318, 331, 339
AluI	AGCT	4 cut(s)	145, 318, 331, 339
AlwI	GGATC	5 cut(s)	224, 248, 361, 374, 487
AoxI	GGCC	3 cut(s)	322, 353, 489
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsiGI	ACCGGT	1 cut(s)	484
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	298, 474
AvrII	CCTAGG	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	355, 378
BceAI	ACGGC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	18, 24
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	436
BisI	GCNGC	3 cut(s)	312, 492, 523
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	3 cut(s)	313, 493, 524
BmiI	GGNNCC	3 cut(s)	36, 368, 434
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	54, 86, 509, 541
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	17, 350
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	132, 243
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	17, 350
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	132, 243
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	324, 355, 491
BshNI	GGYRCC	1 cut(s)	432
BshTI	ACCGGT	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	3 cut(s)	324, 355, 491
Bsp143I	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
BspACI	CCGC	2 cut(s)	492, 522
BspANI	GGCC	3 cut(s)	324, 355, 491
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	36, 368, 434
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	5 cut(s)	224, 248, 361, 374, 487
BspT107I	GGYRCC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	132, 243
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	17, 350
BssMI	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	113, 415
BstACI	GRCGYC	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	316, 357
BstDEI	CTNAG	2 cut(s)	200, 462
BstDSI	CCRYGG	1 cut(s)	350
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	7 cut(s)	31, 60, 199, 232, 256, 369, 482
BstMBI	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	229, 366
BstYI	RGATCY	2 cut(s)	229, 366
BsuRI	GGCC	3 cut(s)	324, 355, 491
BtgI	CCRYGG	1 cut(s)	350
BtgZI	GCGATG	2 cut(s)	356, 374
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	316, 357
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	2 cut(s)	158, 223
DdeI	CTNAG	2 cut(s)	200, 462
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	7 cut(s)	30, 59, 198, 231, 255, 368, 481
DpnII	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
EaeI	YGGCCR	3 cut(s)	322, 353, 489
Eco130I	CCWWGG	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	161, 226
FaiI	YATR	8 cut(s)	14, 159, 224, 342, 418, 420, 471, 504
FatI	CATG	2 cut(s)	157, 222
Fnu4HI	GCNGC	3 cut(s)	312, 492, 523
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	312, 492, 523
FspBI	CTAG	2 cut(s)	18, 24
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	312, 492, 523
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	324, 355, 491
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	2 cut(s)	161, 226
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	316
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	2 cut(s)	298, 474
Hpy166II	GTNNAC	2 cut(s)	81, 166
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	5 cut(s)	32, 49, 71, 233, 425
Hpy8I	GTNNAC	2 cut(s)	81, 166
HpyAV	CCTTC	2 cut(s)	162, 528
HpyCH4III	ACNGT	2 cut(s)	113, 415
HpyCH4V	TGCA	3 cut(s)	239, 277, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	200, 462
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	161, 226
HspAI	GCGC	1 cut(s)	433
KasI	GGCGCC	1 cut(s)	432
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
LmnI	GCTCC	2 cut(s)	34, 427
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	18, 24
MaeIII	GTNAC	2 cut(s)	127, 286
MalI	GATC	7 cut(s)	30, 59, 198, 231, 255, 368, 481
MbiI	CCGCTC	1 cut(s)	522
MboI	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	2 cut(s)	229, 366
MluCI	AATT	2 cut(s)	398, 439
Mly113I	GGCGCC	1 cut(s)	433
MnlI	CCTC	5 cut(s)	48, 93, 118, 183, 272
MseI	TTAA	4 cut(s)	6, 147, 165, 444
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	308
NarI	GGCGCC	1 cut(s)	433
NdeII	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
NlaIII	CATG	2 cut(s)	161, 226
NlaIV	GGNNCC	3 cut(s)	36, 368, 434
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	313, 493, 524
PluTI	GGCGCC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	504
PspEI	GGTNACC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	36, 368, 434
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	229, 366
SaqAI	TTAA	4 cut(s)	6, 147, 165, 444
SatI	GCNGC	3 cut(s)	312, 492, 523
Sau3AI	GATC	7 cut(s)	28, 57, 196, 229, 253, 366, 479
SetI	ASST	8 cut(s)	129, 147, 154, 175, 264, 320, 333, 341
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	309
SfoI	GGCGCC	1 cut(s)	434
SgrAI	CRCCGGYG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	398, 439
SsiI	CCGC	2 cut(s)	492, 522
SspDI	GGCGCC	1 cut(s)	432
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	2 cut(s)	18, 24
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	113, 415
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	398, 439
TauI	GCSGC	2 cut(s)	494, 525
Tru1I	TTAA	4 cut(s)	6, 147, 165, 444
Tru9I	TTAA	4 cut(s)	6, 147, 165, 444
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	439
XmaJI	CCTAGG	1 cut(s)	17
XspI	CTAG	2 cut(s)	18, 24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.