Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

30206035 .. 30207771

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTATCAGCTTTTGGCTATATATACTCGGTGGCTTGTGTTTTCAATTCAGTTAATGCTTAAATCTATGGCGAGGGCTAGAGATCAGGAGCCTCTTGTCGTCGGGAGAGTGATAGGAGATGTTATAGAGCCGTTCACGAAGTCTGTGTCTTTGAGGATGACTTACAGTAATAACAGGGAGGTTACCAGTGGCTGTGAGCTTAAACCTTCTCATGTTATCAACCGACCTCGAGTTCAGATAGGCGGAGATGATCTTAGGAACTTCTACACTCTGGTCATGGTAGATCCTGATGCGCCCAGTCCAAGTGATCCCAACCTCAAGGAATACTTGCATTGGTTGGTTACTGATATTCCGGCAACAACTGGAGCAAGCTTCGGCCAAGAGATTGTGAGCTATGAAAGTCCAAGGCCATCTATTGGGATCCATCGCTTTGTTTCGGTTTTGTTTCGCCAATTGGGAAGGCAAACAGTGTATGCTCCAGGATGGCGCCAAAATTTTAACACCAGAGAGTTTGCTGAGAACTATAATCTTGGATCACCGGTGGCCGCTGTCTTTTTTAACTGCCAGAGGGAGAGCGGCTCCGGCGGAAGGAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

200

Amino Acids

22.58

Weight (kDa)

9.22

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	76 - 179	2.8e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	576
AciI	CCGC	4 cut(s)	243, 546, 576, 585
AclWI	GGATC	5 cut(s)	278, 302, 415, 428, 541
AcoI	YGGCCR	2 cut(s)	376, 543
AcsI	RAATTY	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	416, 588
AgeI	ACCGGT	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	10, 199, 372, 393
AluI	AGCT	4 cut(s)	10, 199, 372, 393
AlwI	GGATC	5 cut(s)	278, 302, 415, 428, 541
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	376, 407, 543
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	295, 489
AsuHPI	GGTGA	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	486
BccI	CCATC	3 cut(s)	418, 432, 477
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	490
BisI	GCNGC	2 cut(s)	546, 577
BlsI	GCNGC	2 cut(s)	547, 578
Bme1390I	CCNGG	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	4 cut(s)	90, 422, 488, 580
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	2 cut(s)	384, 462
BpuEI	CTTGAG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 588
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	186, 297, 367
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	162, 488
BseLI	CCNNNNNNNGG	2 cut(s)	416, 588
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	3 cut(s)	186, 297, 367
BshFI	GGCC	3 cut(s)	378, 409, 545
BshNI	GGYRCC	1 cut(s)	486
BshTI	ACCGGT	1 cut(s)	538
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	353, 539, 582
BslI	CCNNNNNNNGG	2 cut(s)	416, 588
BsnI	GGCC	3 cut(s)	378, 409, 545
BsoBI	CYCGRG	1 cut(s)	228
Bsp143I	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
BspACI	CCGC	4 cut(s)	243, 546, 576, 585
BspANI	GGCC	3 cut(s)	378, 409, 545
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	90, 422, 488, 580
BspPI	GGATC	5 cut(s)	278, 302, 415, 428, 541
BspT107I	GGYRCC	1 cut(s)	486
BsrBI	CCGCTC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	3 cut(s)	186, 297, 367
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	167, 469
BstACI	GRCGYC	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	254, 516
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	162, 488
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	295, 489
BstKTI	GATC	6 cut(s)	85, 253, 286, 310, 423, 536
BstMBI	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	1 cut(s)	480
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	283, 420
BstYI	RGATCY	2 cut(s)	283, 420
BsuRI	GGCC	3 cut(s)	378, 409, 545
BtgZI	GCGATG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	162, 488
BtsIMutI	CAGTG	2 cut(s)	193, 474
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	192
CfoI	GCGC	2 cut(s)	295, 489
Cfr10I	RCCGGY	1 cut(s)	538
CspAI	ACCGGT	1 cut(s)	538
CviAII	CATG	2 cut(s)	212, 277
DdeI	CTNAG	2 cut(s)	254, 516
DinI	GGCGCC	1 cut(s)	488
DpnI	GATC	6 cut(s)	84, 252, 285, 309, 422, 535
DpnII	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
EaeI	YGGCCR	2 cut(s)	376, 543
EciI	GGCGGA	2 cut(s)	258, 600
Eco130I	CCWWGG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	488
EheI	GGCGCC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	2 cut(s)	215, 280
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	2 cut(s)	211, 276
Fnu4HI	GCNGC	2 cut(s)	546, 577
FokI	GGATG	2 cut(s)	169, 495
Fsp4HI	GCNGC	2 cut(s)	546, 577
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	294, 488
GluI	GCNGC	2 cut(s)	546, 577
GsuI	CTGGAG	2 cut(s)	384, 462
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	378, 409, 545
HapII	CCGG	3 cut(s)	353, 539, 582
HhaI	GCGC	2 cut(s)	295, 489
Hin1I	GRCGYC	1 cut(s)	487
Hin1II	CATG	2 cut(s)	215, 280
Hin6I	GCGC	2 cut(s)	293, 487
HinP1I	GCGC	2 cut(s)	293, 487
HindIII	AAGCTT	1 cut(s)	370
HpaII	CCGG	3 cut(s)	353, 539, 582
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	4 cut(s)	86, 103, 136, 287
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	216, 453, 582
HpyCH4III	ACNGT	2 cut(s)	167, 469
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	2 cut(s)	254, 516
Hsp92I	GRCGYC	1 cut(s)	487
Hsp92II	CATG	2 cut(s)	215, 280
HspAI	GCGC	2 cut(s)	293, 487
KasI	GGCGCC	1 cut(s)	486
Kzo9I	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
LmnI	GCTCC	4 cut(s)	88, 365, 481, 584
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	181, 340
MalI	GATC	6 cut(s)	84, 252, 285, 309, 422, 535
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	2 cut(s)	283, 420
MluCI	AATT	3 cut(s)	45, 452, 493
Mly113I	GGCGCC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	66, 102, 147, 172, 237, 326, 561
MseI	TTAA	5 cut(s)	53, 60, 201, 498, 558
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	353, 539, 582
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	582
NarI	GGCGCC	1 cut(s)	487
NdeII	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
NlaIII	CATG	2 cut(s)	215, 280
NlaIV	GGNNCC	4 cut(s)	90, 422, 488, 580
PaeR7I	CTCGAG	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	478
PinAI	ACCGGT	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	547, 578
PluTI	GGCGCC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	4 cut(s)	90, 422, 488, 580
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	283, 420
SaqAI	TTAA	5 cut(s)	53, 60, 201, 498, 558
SatI	GCNGC	2 cut(s)	546, 577
Sau3AI	GATC	6 cut(s)	82, 250, 283, 307, 420, 533
ScrFI	CCNGG	1 cut(s)	480
SetI	ASST	8 cut(s)	12, 183, 201, 208, 229, 318, 374, 395
SfaNI	GCATC	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	488
Sfr274I	CTCGAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	228, 317
SmoI	CTYRAG	2 cut(s)	228, 317
Sse9I	AATT	3 cut(s)	45, 452, 493
SsiI	CCGC	4 cut(s)	243, 546, 576, 585
SspDI	GGCGCC	1 cut(s)	486
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	167, 469
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	45, 452, 493
TauI	GCSGC	2 cut(s)	548, 579
Tru1I	TTAA	5 cut(s)	53, 60, 201, 498, 558
Tru9I	TTAA	5 cut(s)	53, 60, 201, 498, 558
TscAI	CASTG	2 cut(s)	193, 474
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	193, 474
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	228
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.