Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

53312997 .. 53314996

Gene Structure 2000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG378000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCCTAGGGCTAGAGATCGGGAGCCACTTGTTGTCGGGAGAGTGATCGGAGATGTTCTAGACCCGTTTACGAAGTCTGTGTCTTTGAGGATGACTTACAGTAATAACAGGGAGGTTACCAGTGGTTGTGAGCTTAAACCTTCTCATGTTGTTAACCGACCTCGCGTTGAGATAGGGGGAGATGATCTTAGGACTTTCTACACTCTGGTCATGGTAGATCCTGATGCACCCAGTCCAAGTGATCCCAACCTCAAGGAATATTTGCATTGGTTGGTGACTGATATTCCAGCAACAACTGCAGCAAGCTTTGGCCGAGAGCTTGTGAGCTATGAAACTCCACGGCCAGCGATGGGGATCCATCGCTTTGTTTCAGTTTTGTTTCGCCAATTGGGTAGGCAAACAGTATATGCTCCAGAATGGCGCCAAAATTTTAACACCAGAGAGTTTGCTGAGAACTATAATCTTGGATCACCGGTGGCCGCTGTCTATTATAACTGCCAAAGGGAGAGCGGCTCTGGTGGAAGGAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

177

Amino Acids

20.02

Weight (kDa)

8.62

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	54 - 163	1.9e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	510
AccII	CGCG	1 cut(s)	165
AciI	CCGC	2 cut(s)	480, 510
AclWI	GGATC	5 cut(s)	212, 236, 349, 362, 475
AcoI	YGGCCR	3 cut(s)	310, 341, 477
AcsI	RAATTY	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgeI	ACCGGT	1 cut(s)	472
AluBI	AGCT	4 cut(s)	133, 306, 319, 327
AluI	AGCT	4 cut(s)	133, 306, 319, 327
AlwI	GGATC	5 cut(s)	212, 236, 349, 362, 475
AoxI	GGCC	3 cut(s)	310, 341, 477
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	472
AspA2I	CCTAGG	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	286, 462
AvrII	CCTAGG	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	2 cut(s)	343, 366
BceAI	ACGGC	1 cut(s)	356
BfaI	CTAG	3 cut(s)	6, 12, 59
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	300, 480, 511
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	3 cut(s)	301, 481, 512
BmiI	GGNNCC	3 cut(s)	24, 356, 422
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	5, 338
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	120, 231
Bse8I	GATNNNNATC	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	5, 338
BseGI	GGATG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	120, 231
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	312, 343, 479
BshNI	GGYRCC	1 cut(s)	420
BshTI	ACCGGT	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	3 cut(s)	312, 343, 479
Bsp143I	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
BspACI	CCGC	2 cut(s)	480, 510
BspANI	GGCC	3 cut(s)	312, 343, 479
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	24, 356, 422
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	5 cut(s)	212, 236, 349, 362, 475
BspT107I	GGYRCC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	120, 231
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	5, 338
BssMI	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
BssNI	GRCGYC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	101, 403
BstACI	GRCGYC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	304, 345
BstDEI	CTNAG	2 cut(s)	188, 450
BstDSI	CCRYGG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	7 cut(s)	19, 48, 187, 220, 244, 357, 470
BstMBI	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	217, 354
BstYI	RGATCY	2 cut(s)	217, 354
BsuRI	GGCC	3 cut(s)	312, 343, 479
BtgI	CCRYGG	1 cut(s)	338
BtgZI	GCGATG	2 cut(s)	344, 362
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	304, 345
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	472
CspAI	ACCGGT	1 cut(s)	472
CviAII	CATG	2 cut(s)	146, 211
DdeI	CTNAG	2 cut(s)	188, 450
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	7 cut(s)	18, 47, 186, 219, 243, 356, 469
DpnII	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
EaeI	YGGCCR	3 cut(s)	310, 341, 477
Eco130I	CCWWGG	1 cut(s)	5
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	149, 214
FaiI	YATR	8 cut(s)	147, 212, 330, 406, 408, 459, 492, 532
FatI	CATG	2 cut(s)	145, 210
Fnu4HI	GCNGC	3 cut(s)	300, 480, 511
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	300, 480, 511
FspBI	CTAG	3 cut(s)	6, 12, 59
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	300, 480, 511
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	312, 343, 479
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	149, 214
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	286, 462
Hpy166II	GTNNAC	2 cut(s)	69, 154
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	5 cut(s)	20, 37, 59, 221, 413
Hpy8I	GTNNAC	2 cut(s)	69, 154
HpyAV	CCTTC	2 cut(s)	150, 516
HpyCH4III	ACNGT	2 cut(s)	101, 403
HpyCH4V	TGCA	3 cut(s)	227, 265, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	188, 450
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	149, 214
HspAI	GCGC	1 cut(s)	421
KasI	GGCGCC	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
LmnI	GCTCC	2 cut(s)	22, 415
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	3 cut(s)	6, 12, 59
MaeIII	GTNAC	2 cut(s)	115, 274
MalI	GATC	7 cut(s)	18, 47, 186, 219, 243, 356, 469
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	2 cut(s)	217, 354
MluCI	AATT	2 cut(s)	386, 427
Mly113I	GGCGCC	1 cut(s)	421
MnlI	CCTC	4 cut(s)	81, 106, 171, 260
MseI	TTAA	3 cut(s)	135, 153, 432
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	473
MunI	CAATTG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	296
NarI	GGCGCC	1 cut(s)	421
NdeII	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
NlaIII	CATG	2 cut(s)	149, 214
NlaIV	GGNNCC	3 cut(s)	24, 356, 422
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	301, 481, 512
PluTI	GGCGCC	1 cut(s)	424
PsiI	TTATAA	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	24, 356, 422
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	217, 354
SaqAI	TTAA	3 cut(s)	135, 153, 432
SatI	GCNGC	3 cut(s)	300, 480, 511
Sau3AI	GATC	7 cut(s)	16, 45, 184, 217, 241, 354, 467
SetI	ASST	8 cut(s)	117, 135, 142, 163, 252, 308, 321, 329
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	422
SgrAI	CRCCGGYG	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	386, 427
SsiI	CCGC	2 cut(s)	480, 510
SspDI	GGCGCC	1 cut(s)	420
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	3 cut(s)	6, 12, 59
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	101, 403
TasI	AATT	2 cut(s)	386, 427
TauI	GCSGC	2 cut(s)	482, 513
Tru1I	TTAA	3 cut(s)	135, 153, 432
Tru9I	TTAA	3 cut(s)	135, 153, 432
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	427
XbaI	TCTAGA	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	5
XspI	CTAG	3 cut(s)	6, 12, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.