Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346221.1

Orthogroup ID

OG0005338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 228

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 221 bp

atgcctagggctagagatcgggagcctcttgttgtcgggagagtgatcggagatgttctagacccgtttacgaagtctgtgtctttgaggatgacttacagtaataacagggaggttaccagtggttgtgagctgaaaccttctcatgttgttaaccgacctcgcgttgagatagggggagatgatcttaggactttctacactctggtaattaattacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008289 GO:0008429 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0010228 GO:0010229 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048572 GO:0048573 GO:0048575 GO:0048576 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0090567 GO:2000026 GO:2000028 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

PBP

Protein Analysis

74

Amino Acids

8.42

Weight (kDa)

9.03

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65480 AT4G20370
fragaria_vesca	FvH4_4g30710 FvH4_6g00090
malus_domestica	MD12G1262000.v1.1
prunus_persica	Prupe.6G364900_v2.0.a1
pyrus_communis	pycom04g21920 pycom12g24180
rosa_chinensis	RchiOBHm_Chr3g0447431 RchiOBHm_Chr4g0439111
rosa_laevigata	RLG00000006298 RLG00000025999
rosa_multiflora	Rmu_co8346221.1_g000001 Rmu_ssc0000473.1_g000023
rosa_roxburghii	Rroxscaffold_5G00380100 Rroxscaffold_6G00425650
rosa_rugosa	Rorug02G0601700 Rorug04G0315900
rosa_samantha	Rh3AG001700 Rh3BG001400 Rh3CG001400 Rh3DG001500 Rh4AG366500 Rh4BG378000 Rh4CG392100 Rh4DG372700
rosa_wichuraiana	Rw0G007480 Rw0G011750 Rw3G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AseI	ATTAAT	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	5
AvrII	CCTAGG	1 cut(s)	5
BfaI	CTAG	3 cut(s)	6, 12, 59
BlnI	CCTAGG	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	16, 45, 184
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	3 cut(s)	16, 45, 184
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	19, 48, 187
BstMBI	GATC	3 cut(s)	16, 45, 184
BstPI	GGTNACC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	127
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	3 cut(s)	11, 25, 133
CviKI_1	RGCY	3 cut(s)	11, 25, 133
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	18, 47, 186
DpnII	GATC	3 cut(s)	16, 45, 184
Eco130I	CCWWGG	1 cut(s)	5
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	149
FaiI	YATR	1 cut(s)	147
FatI	CATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	103
FspBI	CTAG	3 cut(s)	6, 12, 59
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaI	GTTAAC	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	69, 154
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	3 cut(s)	20, 37, 59
Hpy8I	GTNNAC	2 cut(s)	69, 154
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	149
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	16, 45, 184
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	94, 133, 191
MaeI	CTAG	3 cut(s)	6, 12, 59
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	18, 47, 186
MboI	GATC	3 cut(s)	16, 45, 184
MluCI	AATT	2 cut(s)	210, 214
MnlI	CCTC	4 cut(s)	36, 81, 106, 171
MseI	TTAA	2 cut(s)	153, 213
MvnI	CGCG	1 cut(s)	165
NdeII	GATC	3 cut(s)	16, 45, 184
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	153, 213
Sau3AI	GATC	3 cut(s)	16, 45, 184
SetI	ASST	4 cut(s)	117, 135, 142, 163
Sse9I	AATT	2 cut(s)	210, 214
SspMI	CTAG	3 cut(s)	6, 12, 59
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	2 cut(s)	210, 214
Tru1I	TTAA	2 cut(s)	153, 213
Tru9I	TTAA	2 cut(s)	153, 213
TscAI	CASTG	1 cut(s)	127
TspRI	CASTG	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	5
XspI	CTAG	3 cut(s)	6, 12, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.