AT1G65550

Xanthine uracil permease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011640
Physical Location & Seq
Reverse (-)
24367694 .. 24370800
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65550.1

Sequence Viewer

Length: 1626 bp
ATGACAAACGGTGGTGGCGGAAACAACGGAGCAGCAAACCGGACGGAAGAGTTACAACCCCACCCGGTGAAAGAACAACTCCCCGGAATCCAGTACTGCGTCAACAGTCCTCCTCCTTGGCTTGAAGCCGTAGTGTTGGGTTTCCAGCATTACTTGTTGAGTCTTGGCATCACAGTTCTGATTCCAAGTGTATTAGTTCCACTCATGGGAGGTGGCTATGCAGAAAAGGTTAAAGTCATACAAACATTACTGTTTGTGTCTGGATTAACAACATTGTTCCAGTCATTCTTTGGAACTCGATTGCCTGTGATAGCTGTAGCTTCTTATGCCTATATCATACCTATCACTTCCATCATTTATTCGACCCGATTCACTTACTACACTGATCCTTTTGAAAGGTTTGTGCGAACAATGAGAAGCATACAAGGAGCTTTGATTATAACCGGATGTTTCCAAGTTCTTATCTGTATTCTAGGCGTATGGAGAAATATTGTTAGATTTCTAAGTCCACTCTCCATTGCTCCTTTGGCAACATTTACCGGATTGGGACTCTACCACATCGGTTTCCCTTTGCTAGCAAGATGCGTTGAAGTGGGACTTCCCGGATTGATCCTACTTATTTTTGTCACTCAGTACTTACCGCGTTTTCTGAAGATGAAAAAAGGAGTGATGATTTTGGATGGAAGCAGATGTGACCGTTATGGGATGATTTTATGCATTCCATTGGTATGGTTGTTTGCTCAACTTCTCACATCCAGTGGTGTTTATGACCACAAGTCTCATACTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTCCTTGGATATACATACCATATCCTTTCCAATGGGGAAGTCCAACTTTCGACATCACTGATTCTTTTGCGATGATGGCTGCGTCTTTCGTCACTCTATTTGAGTCGACTGGTTTGTTCTATGCATCCGCAAGATATGGAAGCGCGACGCCAATTCCACCATCAGTTGTTAGTCGTGGTACTTGTTGGCTGGGAGTTGGAGTATTACTCAATGGCATGCTTGGAGGCATCACAGGGATCACAACATCAACAGAAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAGCTGCATTCATGATTTTTTTCTCCATTTTTGGAAAATTTGGAGCGTTTTTTGCGTCCATACCATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGTGGGACTTAGCTATCTACAATTCTGCAACCTCAATAGCTTCAACATCAAATTCATTCTCGGATTTTCCTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAGGGTGGCGGTCTGATCATCACTCAAATTGGTTGGAAGATATGATAAGAGTGATATTCATGTCACATACAACGGTTGCGGCAATAATTGCGATAGTGCTTGATTGCACATTGTGTCGTGACAGCGATGAAGCCAAGAAAGATTGCGGAATGAAATGGTGGGATAAGTTTCGACTTTACAATCTTGACGTGCGAAACGATGAGTTTTACGGTCTACCTTGCCGCCTCAACAAATTCTTCCCTTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

541

Amino Acids

60.35

Weight (kDa)

8.94

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 42 - 453 8.3e-51 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65550 AT5G25420
fragaria_vesca FvH4_2g32910
malus_domestica MD04G1056000.v1.1 MD15G1067600.v1.1
prunus_persica Prupe.1G421500_v2.0.a1
pyrus_communis pycom04g04930
rosa_chinensis RchiOBHm_Chr6g0309811
rosa_laevigata RLG00000010534
rosa_multiflora Rmu_co8452475.1_g000001 Rmu_sc0011006.1_g000001 Rmu_ssc0000373.1_g000005
rosa_roxburghii Rroxscaffold_7G00159160
rosa_rugosa Rorug06G0375000
rosa_samantha Rh6AG488300 Rh6BG497900 Rh6CG502700 Rh6DG488800
rosa_wichuraiana Rw6G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AccI GTMKAC 2 cut(s) 938, 1588
AccII CGCG 2 cut(s) 643, 977
AciI CCGC 7 cut(s) 18, 641, 960, 1384, 1454, 1521, 1597
AclWI GGATC 3 cut(s) 380, 604, 1076
AcsI RAATTY 3 cut(s) 1178, 1307, 1607
AcuI CTGAAG 2 cut(s) 671, 1342
AcyI GRCGYC 1 cut(s) 980
AdeI CACNNNGTG 2 cut(s) 67, 1488
AfaI GTAC 5 cut(s) 95, 635, 805, 814, 1012
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 5 cut(s) 125, 395, 590, 1300, 1344
AhdI GACNNNNNGTC 1 cut(s) 775
AjiI CACGTC 1 cut(s) 1564
AluBI AGCT 6 cut(s) 314, 320, 431, 1145, 1269, 1296
AluI AGCT 6 cut(s) 314, 320, 431, 1145, 1269, 1296
Alw26I GTCTC 2 cut(s) 783, 824
AlwI GGATC 3 cut(s) 380, 604, 1076
ApeKI GCWGC 3 cut(s) 32, 911, 1145
ApoI RAATTY 3 cut(s) 1178, 1307, 1607
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
AspLEI GCGC 1 cut(s) 977
AsuC2I CCSGG 3 cut(s) 65, 84, 603
AsuHPI GGTGA 2 cut(s) 79, 817
AsuNHI GCTAGC 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 1245
BbvI GCAGC 3 cut(s) 44, 898, 1132
BccI CCATC 4 cut(s) 359, 674, 901, 1000
BceAI ACGGC 1 cut(s) 113
BclI TGATCA 1 cut(s) 1390
BcnI CCSGG 3 cut(s) 65, 84, 603
BcoDI GTCTC 2 cut(s) 783, 824
BfaI CTAG 2 cut(s) 473, 575
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 5 cut(s) 33, 912, 1146, 1455, 1597
BlsI GCNGC 5 cut(s) 34, 913, 1147, 1456, 1598
BmcAI AGTACT 2 cut(s) 95, 635
Bme1390I CCNGG 3 cut(s) 65, 84, 603
BmeRI GACNNNNNGTC 1 cut(s) 775
BmgBI CACGTC 1 cut(s) 1564
BmrFI CCNGG 3 cut(s) 65, 84, 603
BmsI GCATC 6 cut(s) 177, 572, 965, 1068, 1229, 1242
BmtI GCTAGC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 1245
BplI GAGNNNNNCTC 2 cut(s) 1023, 1055
BpuMI CCSGG 3 cut(s) 65, 84, 603
BsaHI GRCGYC 1 cut(s) 980
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 3 cut(s) 82, 116, 836
BsaWI WCCGGW 3 cut(s) 39, 443, 539
BsaXI ACNNNNNCTCC 4 cut(s) 817, 847, 1017, 1047
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 6 cut(s) 91, 280, 756, 795, 820, 946
Bse3DI GCAATG 2 cut(s) 516, 1110
BseDI CCNNGG 3 cut(s) 82, 116, 836
BseGI GGATG 5 cut(s) 452, 685, 711, 752, 956
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 516, 1110
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 6 cut(s) 91, 280, 756, 795, 820, 946
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 44, 898, 1132
BseYI CCCAGC 1 cut(s) 1021
Bsh1236I CGCG 2 cut(s) 643, 977
BsiSI CCGG 6 cut(s) 40, 65, 84, 444, 540, 603
BslFI GGGAC 3 cut(s) 561, 609, 1275
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 783, 824
BsmFI GGGAC 3 cut(s) 561, 609, 1275
BsmI GAATGC 2 cut(s) 717, 1148
Bso31I GGTCTC 1 cut(s) 824
Bsp143I GATC 5 cut(s) 385, 609, 808, 1068, 1390
BspACI CCGC 7 cut(s) 18, 641, 960, 1384, 1454, 1521, 1597
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 2 cut(s) 643, 977
BspHI TCATGA 1 cut(s) 1152
BspOI GCTAGC 1 cut(s) 578
BspPI GGATC 3 cut(s) 380, 604, 1076
BspTNI GGTCTC 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 516, 1110
BsrI ACTGG 6 cut(s) 91, 280, 756, 795, 820, 946
BssECI CCNNGG 3 cut(s) 82, 116, 836
BssMI GATC 5 cut(s) 385, 609, 808, 1068, 1390
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 2 cut(s) 116, 836
Bst4CI ACNGT 7 cut(s) 11, 107, 175, 252, 698, 1450, 1586
Bst6I CTCTTC 2 cut(s) 42, 1120
BstACI GRCGYC 1 cut(s) 980
BstAPI GCANNNNNTGC 1 cut(s) 1463
BstC8I GCNNGC 2 cut(s) 576, 1049
BstDEI CTNAG 4 cut(s) 503, 630, 1110, 1265
BstF5I GGATG 5 cut(s) 452, 685, 711, 752, 956
BstFNI CGCG 2 cut(s) 643, 977
BstHHI GCGC 1 cut(s) 977
BstKTI GATC 5 cut(s) 388, 612, 811, 1071, 1393
BstMAI GTCTC 2 cut(s) 783, 824
BstMBI GATC 5 cut(s) 385, 609, 808, 1068, 1390
BstMWI GCNNNNNNNGC 5 cut(s) 326, 527, 908, 1193, 1463
BstNSI RCATGY 1 cut(s) 1051
BstSCI CCNGG 3 cut(s) 63, 82, 601
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 2 cut(s) 643, 977
BstV1I GCAGC 3 cut(s) 44, 898, 1132
BstV2I GAAGAC 1 cut(s) 1245
BstXI CCANNNNNNTGG 1 cut(s) 729
BtgZI GCGATG 2 cut(s) 917, 1515
BtrI CACGTC 1 cut(s) 1564
BtsCI GGATG 5 cut(s) 452, 685, 711, 752, 956
BtsIMutI CAGTG 3 cut(s) 381, 763, 888
Cac8I GCNNGC 2 cut(s) 576, 1049
CciI TCATGA 1 cut(s) 1152
CfoI GCGC 1 cut(s) 977
CseI GACGC 4 cut(s) 88, 903, 988, 1185
Csp6I GTAC 5 cut(s) 94, 634, 804, 813, 1011
CviAII CATG 6 cut(s) 205, 1048, 1153, 1216, 1333, 1435
CviQI GTAC 5 cut(s) 94, 634, 804, 813, 1011
DdeI CTNAG 4 cut(s) 503, 630, 1110, 1265
DpnI GATC 5 cut(s) 387, 611, 810, 1070, 1392
DpnII GATC 5 cut(s) 385, 609, 808, 1068, 1390
DraIII CACNNNGTG 2 cut(s) 67, 1488
DriI GACNNNNNGTC 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 42, 1120
Eam1105I GACNNNNNGTC 1 cut(s) 775
EarI CTCTTC 2 cut(s) 42, 1120
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 116, 836
Eco31I GGTCTC 1 cut(s) 824
Eco57I CTGAAG 2 cut(s) 671, 1342
EcoT14I CCWWGG 2 cut(s) 116, 836
EcoT22I ATGCAT 2 cut(s) 719, 958
ErhI CCWWGG 2 cut(s) 116, 836
FaeI CATG 6 cut(s) 208, 1051, 1156, 1219, 1336, 1438
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 862, 894
FaqI GGGAC 3 cut(s) 561, 609, 1275
FatI CATG 6 cut(s) 204, 1047, 1152, 1215, 1332, 1434
FbaI TGATCA 1 cut(s) 1390
FblI GTMKAC 2 cut(s) 938, 1588
Fnu4HI GCNGC 5 cut(s) 33, 912, 1146, 1455, 1597
FokI GGATG 5 cut(s) 459, 692, 718, 739, 943
Fsp4HI GCNGC 5 cut(s) 33, 912, 1146, 1455, 1597
FspBI CTAG 2 cut(s) 473, 575
GlaI GCGC 1 cut(s) 976
GluI GCNGC 5 cut(s) 33, 912, 1146, 1455, 1597
GsaI CCCAGC 1 cut(s) 1025
HapII CCGG 6 cut(s) 40, 65, 84, 444, 540, 603
HgaI GACGC 4 cut(s) 88, 903, 988, 1185
HhaI GCGC 1 cut(s) 977
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 6 cut(s) 208, 1051, 1156, 1219, 1336, 1438
Hin6I GCGC 1 cut(s) 975
HinP1I GCGC 1 cut(s) 975
HincII GTYRAC 2 cut(s) 103, 939
HindII GTYRAC 2 cut(s) 103, 939
HinfI GANTC 8 cut(s) 87, 160, 181, 369, 549, 893, 935, 1120
HpaII CCGG 6 cut(s) 40, 65, 84, 444, 540, 603
HphI GGTGA 2 cut(s) 79, 817
Hpy166II GTNNAC 4 cut(s) 103, 509, 939, 1589
Hpy188I TCNGA 5 cut(s) 180, 651, 1319, 1361, 1390
Hpy188III TCNNGA 4 cut(s) 261, 1153, 1493, 1559
Hpy8I GTNNAC 4 cut(s) 103, 509, 939, 1589
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 1 cut(s) 1626
HpyCH4III ACNGT 7 cut(s) 11, 107, 175, 252, 698, 1450, 1586
HpyCH4IV ACGT 1 cut(s) 1563
HpyCH4V TGCA 7 cut(s) 221, 717, 956, 1148, 1233, 1284, 1482
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 527, 908, 1193, 1463
HpyF3I CTNAG 4 cut(s) 503, 630, 1110, 1265
HpySE526I ACGT 1 cut(s) 1563
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 6 cut(s) 208, 1051, 1156, 1219, 1336, 1438
HspAI GCGC 1 cut(s) 975
Ksp22I TGATCA 1 cut(s) 1390
Kzo9I GATC 5 cut(s) 385, 609, 808, 1068, 1390
LmnI GCTCC 4 cut(s) 29, 428, 526, 1184
Lsp1109I GCAGC 3 cut(s) 44, 898, 1132
LweI GCATC 6 cut(s) 177, 572, 965, 1068, 1229, 1242
MaeI CTAG 2 cut(s) 473, 575
MaeII ACGT 1 cut(s) 1563
MaeIII GTNAC 6 cut(s) 51, 625, 692, 922, 1437, 1493
MalI GATC 5 cut(s) 387, 611, 810, 1070, 1392
MboI GATC 5 cut(s) 385, 609, 808, 1068, 1390
MboII GAAGA 6 cut(s) 59, 664, 1137, 1245, 1424, 1603
MluCI AATT 7 cut(s) 984, 1178, 1277, 1307, 1402, 1461, 1607
MlyI GAGTC 4 cut(s) 169, 543, 944, 1129
MmeI TCCRAC 4 cut(s) 899, 1009, 1072, 1389
MnlI CCTC 7 cut(s) 120, 123, 203, 1049, 1298, 1370, 1610
Mph1103I ATGCAT 2 cut(s) 719, 958
MseI TTAA 2 cut(s) 231, 266
MslI CAYNNNNRTG 1 cut(s) 727
MspA1I CMGCKG 1 cut(s) 1145
MspI CCGG 6 cut(s) 40, 65, 84, 444, 540, 603
MspR9I CCNGG 3 cut(s) 65, 84, 603
Mva1269I GAATGC 2 cut(s) 717, 1148
MvnI CGCG 2 cut(s) 643, 977
MwoI GCNNNNNNNGC 5 cut(s) 326, 527, 908, 1193, 1463
NciI CCSGG 3 cut(s) 65, 84, 603
NdeII GATC 5 cut(s) 385, 609, 808, 1068, 1390
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 6 cut(s) 208, 1051, 1156, 1219, 1336, 1438
NmuCI GTSAC 5 cut(s) 625, 692, 922, 1437, 1493
NsiI ATGCAT 2 cut(s) 719, 958
NspI RCATGY 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 1051
PagI TCATGA 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 2 cut(s) 808, 1569
PctI GAATGC 2 cut(s) 717, 1148
PfeI GAWTC 4 cut(s) 87, 181, 369, 893
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 5 cut(s) 34, 913, 1147, 1456, 1598
PleI GAGTC 4 cut(s) 168, 543, 943, 1128
PpsI GAGTC 4 cut(s) 168, 543, 943, 1128
PsiI TTATAA 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 1021
PvuII CAGCTG 1 cut(s) 1145
RsaI GTAC 5 cut(s) 95, 635, 805, 814, 1012
RsaNI GTAC 5 cut(s) 94, 634, 804, 813, 1011
RseI CAYNNNNRTG 1 cut(s) 727
SalI GTCGAC 1 cut(s) 937
SaqAI TTAA 2 cut(s) 231, 266
SatI GCNGC 5 cut(s) 33, 912, 1146, 1455, 1597
Sau3AI GATC 5 cut(s) 385, 609, 808, 1068, 1390
ScaI AGTACT 2 cut(s) 95, 635
SchI GAGTC 4 cut(s) 169, 543, 944, 1129
ScrFI CCNGG 3 cut(s) 65, 84, 603
SfaNI GCATC 6 cut(s) 177, 572, 965, 1068, 1229, 1242
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 727
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 7 cut(s) 984, 1178, 1277, 1307, 1402, 1461, 1607
SsiI CCGC 7 cut(s) 18, 641, 960, 1384, 1454, 1521, 1597
SspI AATATT 1 cut(s) 490
SspMI CTAG 2 cut(s) 473, 575
StyD4I CCNGG 3 cut(s) 63, 82, 601
StyI CCWWGG 2 cut(s) 116, 836
TaaI ACNGT 7 cut(s) 11, 107, 175, 252, 698, 1450, 1586
TaiI ACGT 1 cut(s) 1566
TaqI TCGA 6 cut(s) 298, 362, 882, 938, 1123, 1546
TasI AATT 7 cut(s) 984, 1178, 1277, 1307, 1402, 1461, 1607
TatI WGTACW 2 cut(s) 93, 633
TauI GCSGC 2 cut(s) 1457, 1599
TfiI GAWTC 4 cut(s) 87, 181, 369, 893
Tru1I TTAA 2 cut(s) 231, 266
Tru9I TTAA 2 cut(s) 231, 266
TscAI CASTG 3 cut(s) 388, 763, 895
TseFI GTSAC 5 cut(s) 625, 692, 922, 1437, 1493
TseI GCWGC 3 cut(s) 32, 911, 1145
Tsp45I GTSAC 5 cut(s) 625, 692, 922, 1437, 1493
TspDTI ATGAA 7 cut(s) 671, 1141, 1300, 1321, 1423, 1518, 1541
TspGWI ACGGA 2 cut(s) 42, 59
TspRI CASTG 3 cut(s) 388, 763, 895
XapI RAATTY 3 cut(s) 1178, 1307, 1607
XceI RCATGY 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 2 cut(s) 287, 523
XmiI GTMKAC 2 cut(s) 938, 1588
XspI CTAG 2 cut(s) 473, 575
ZrmI AGTACT 2 cut(s) 95, 635
Zsp2I ATGCAT 2 cut(s) 719, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.