Rmu_ssc0000373.1_g000005

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000373.1
OG0011640
Physical Location & Seq
Reverse (-)
40575 .. 43760
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000373.1_g000005.1.cds

Sequence Viewer

Length: 1107 bp
atggcccaatgcggtggtggcaacaacgacaagagtaatggcggtggtggttgtacttgtagtggcaagaagaagatcaatggtgatggtggccgcgacaaaaagttcgaggagttgcagccacacccaataaaagagcagttaccaggagttcagtactgtgttaacagtcctcctccatggactgaagctatagtgttgggtttccagcactatcttttaactcttggtattactgtcttgattccaaacacaattgttcctcatatgggcggaggcgatgttgagaaggctaaggtggtacaaaccatgctctttctttcagggttgaacacactcttgcaatctctatttgggaccagacttccctcggtggtagtgggatcatatacttatgtactccccacaacttcaataatcctagccaatagatacaaggcattcacagatcctcatgagaggtttttacaaagtatgagaggcatacaaggggctctaattgtcaccgccagttttcagatgattgtgggcttcctaggcttgtggagaaatgttgtaaggtttctgagccctctttctattgtgccgtacataacctttgctggacttggcctctatcatcttggtttccctatgtatctttctcgttttataaatacaaaatggcagatatttgacagatttgcagtcacgttctctgttggaattgtgtggttatttgcacaacttcttacctcaagtggtgtttatgacaacaaacctgcgagcactcagatgagttgtcgcactgaccgttctggccttctcgctgcatctccctggatatatattccatatccatttcaatggggaagccccacttttaatgcaggagaagcttttgcaatgtttaatgatgtagtgacagtgaccttcatgtctcacacattagtagctgctctggttgctctgatactggactgctcgctttcgagagaaaatgatgcatctagaaaagacagtggcttgaactggtgggcgaaatttgggggatatggttctgatgttaggaatgatgagttctatgcattaccatgcagtctggacaagcttttcccagctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

368

Amino Acids

40.49

Weight (kDa)

8.75

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65550 AT5G25420
fragaria_vesca FvH4_2g32910
malus_domestica MD04G1056000.v1.1 MD15G1067600.v1.1
prunus_persica Prupe.1G421500_v2.0.a1
pyrus_communis pycom04g04930
rosa_chinensis RchiOBHm_Chr6g0309811
rosa_laevigata RLG00000010534
rosa_multiflora Rmu_co8452475.1_g000001 Rmu_sc0011006.1_g000001 Rmu_ssc0000373.1_g000005
rosa_roxburghii Rroxscaffold_7G00159160
rosa_rugosa Rorug06G0375000
rosa_samantha Rh6AG488300 Rh6BG497900 Rh6CG502700 Rh6DG488800
rosa_wichuraiana Rw6G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
AasI GACNNNNNNGTC 1 cut(s) 916
Acc36I ACCTGC 1 cut(s) 769
AccII CGCG 1 cut(s) 96
AciI CCGC 5 cut(s) 12, 42, 94, 273, 507
AclWI GGATC 2 cut(s) 391, 443
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 5 cut(s) 55, 158, 303, 399, 590
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 331, 414, 845, 1009
AjnI CCWGG 2 cut(s) 145, 818
AluBI AGCT 5 cut(s) 191, 878, 935, 1090, 1100
AluI AGCT 5 cut(s) 191, 878, 935, 1090, 1100
Alw21I GWGCWC 1 cut(s) 770
Alw26I GTCTC 1 cut(s) 924
AlwI GGATC 2 cut(s) 391, 443
AoxI GGCC 4 cut(s) 3, 91, 610, 799
ApeKI GCWGC 3 cut(s) 118, 809, 935
ApoI RAATTY 1 cut(s) 1022
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 4, 357
AsuHPI GGTGA 2 cut(s) 95, 496
AvaII GGWCC 1 cut(s) 357
AvrII CCTAGG 1 cut(s) 535
BanII GRGCYC 2 cut(s) 496, 572
Bbv12I GWGCWC 1 cut(s) 770
BbvI GCAGC 3 cut(s) 130, 796, 922
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 571
BciT130I CCWGG 2 cut(s) 147, 820
BcoDI GTCTC 1 cut(s) 924
BfaI CTAG 3 cut(s) 422, 536, 990
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 769
BisI GCNGC 4 cut(s) 94, 119, 810, 936
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 4 cut(s) 95, 120, 811, 937
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 147, 820
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 2 cut(s) 4, 357
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 147, 820
BmsI GCATC 3 cut(s) 821, 973, 995
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 721
BsaJI CCNNGG 4 cut(s) 179, 369, 535, 818
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 510, 960, 1016
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 2 cut(s) 147, 820
BseDI CCNNGG 4 cut(s) 179, 369, 535, 818
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 557, 785
BseNI ACTGG 3 cut(s) 510, 960, 1016
BseRI GAGGAG 2 cut(s) 125, 165
BseXI GCAGC 3 cut(s) 130, 796, 922
BseYI CCCAGC 1 cut(s) 1096
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 4 cut(s) 5, 93, 612, 801
BsiHKAI GWGCWC 1 cut(s) 770
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 924
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 4 cut(s) 5, 93, 612, 801
Bsp1286I GDGCHC 3 cut(s) 496, 572, 770
Bsp143I GATC 3 cut(s) 75, 383, 448
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 5 cut(s) 12, 42, 94, 273, 507
BspANI GGCC 4 cut(s) 5, 93, 612, 801
BspCNI CTCAG 2 cut(s) 558, 784
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 2 cut(s) 391, 443
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 3 cut(s) 510, 960, 1016
BssECI CCNNGG 4 cut(s) 179, 369, 535, 818
BssMI GATC 3 cut(s) 75, 383, 448
BssT1I CCWWGG 2 cut(s) 179, 535
Bst2UI CCWGG 2 cut(s) 147, 820
Bst4CI ACNGT 6 cut(s) 161, 170, 238, 794, 907, 1001
BstC8I GCNNGC 2 cut(s) 766, 965
BstDEI CTNAG 3 cut(s) 294, 566, 771
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 3 cut(s) 78, 386, 451
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 3 cut(s) 75, 383, 448
BstMWI GCNNNNNNNGC 4 cut(s) 18, 537, 875, 944
BstNI CCWGG 2 cut(s) 147, 820
BstSCI CCNGG 2 cut(s) 145, 818
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 130, 796, 922
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 2 cut(s) 14, 846
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 4 cut(s) 5, 93, 612, 801
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 786, 912, 1006
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 766, 965
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 4, 357
Csp6I GTAC 5 cut(s) 54, 157, 302, 398, 589
CviAII CATG 5 cut(s) 180, 310, 455, 916, 1074
CviQI GTAC 5 cut(s) 54, 157, 302, 398, 589
DdeI CTNAG 3 cut(s) 294, 566, 771
DpnI GATC 3 cut(s) 77, 385, 450
DpnII GATC 3 cut(s) 75, 383, 448
DrdI GACNNNNNNGTC 1 cut(s) 916
DseDI GACNNNNNNGTC 1 cut(s) 916
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 179, 535
Eco24I GRGCYC 2 cut(s) 496, 572
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 145, 818
EcoT14I CCWWGG 2 cut(s) 179, 535
EcoT22I ATGCAT 2 cut(s) 988, 1069
EcoT38I GRGCYC 2 cut(s) 496, 572
ErhI CCWWGG 2 cut(s) 179, 535
FaeI CATG 5 cut(s) 183, 313, 458, 919, 1077
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FaqI GGGAC 1 cut(s) 370
FatI CATG 5 cut(s) 179, 309, 454, 915, 1073
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 94, 119, 810, 936
FriOI GRGCYC 2 cut(s) 496, 572
Fsp4HI GCNGC 4 cut(s) 94, 119, 810, 936
FspBI CTAG 3 cut(s) 422, 536, 990
GluI GCNGC 4 cut(s) 94, 119, 810, 936
GsaI CCCAGC 1 cut(s) 1100
HaeIII GGCC 4 cut(s) 5, 93, 612, 801
Hin1II CATG 5 cut(s) 183, 313, 458, 919, 1077
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 876, 1088
HinfI GANTC 1 cut(s) 244
HpaI GTTAAC 1 cut(s) 166
HphI GGTGA 2 cut(s) 95, 496
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 519, 567, 774, 951, 1042
Hpy188III TCNNGA 5 cut(s) 241, 455, 972, 990, 1082
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 283, 812, 922
HpyCH4III ACNGT 6 cut(s) 161, 170, 238, 794, 907, 1001
HpyCH4IV ACGT 1 cut(s) 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 537, 875, 944
HpyF3I CTNAG 3 cut(s) 294, 566, 771
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 5 cut(s) 183, 313, 458, 919, 1077
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 75, 383, 448
Lsp1109I GCAGC 3 cut(s) 130, 796, 922
LweI GCATC 3 cut(s) 821, 973, 995
MaeI CTAG 3 cut(s) 422, 536, 990
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 5 cut(s) 141, 502, 688, 901, 907
MalI GATC 3 cut(s) 77, 385, 450
MboI GATC 3 cut(s) 75, 383, 448
MboII GAAGA 2 cut(s) 82, 85
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 496, 572, 770
MluCI AATT 4 cut(s) 255, 498, 705, 1022
MmeI TCCRAC 1 cut(s) 682
Mph1103I ATGCAT 2 cut(s) 988, 1069
MseI TTAA 4 cut(s) 165, 221, 864, 891
MslI CAYNNNNRTG 3 cut(s) 773, 844, 1072
MspR9I CCNGG 2 cut(s) 147, 820
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 2 cut(s) 147, 820
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 18, 537, 875, 944
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 267
NdeII GATC 3 cut(s) 75, 383, 448
NlaIII CATG 5 cut(s) 183, 313, 458, 919, 1077
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 4 cut(s) 502, 688, 901, 907
NsiI ATGCAT 2 cut(s) 988, 1069
PagI TCATGA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 95, 120, 811, 937
PsiI TTATAA 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 145, 818
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 2 cut(s) 145, 818
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 4, 357
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 5 cut(s) 55, 158, 303, 399, 590
RsaNI GTAC 5 cut(s) 54, 157, 302, 398, 589
RseI CAYNNNNRTG 3 cut(s) 773, 844, 1072
SaqAI TTAA 4 cut(s) 165, 221, 864, 891
SatI GCNGC 4 cut(s) 94, 119, 810, 936
Sau3AI GATC 3 cut(s) 75, 383, 448
Sau96I GGNCC 2 cut(s) 4, 357
ScaI AGTACT 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 147, 820
SduI GDGCHC 3 cut(s) 496, 572, 770
SfaNI GCATC 3 cut(s) 821, 973, 995
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 3 cut(s) 773, 844, 1072
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 4 cut(s) 255, 498, 705, 1022
SsiI CCGC 5 cut(s) 12, 42, 94, 273, 507
SspMI CTAG 3 cut(s) 422, 536, 990
StyD4I CCNGG 2 cut(s) 145, 818
StyI CCWWGG 2 cut(s) 179, 535
TaaI ACNGT 6 cut(s) 161, 170, 238, 794, 907, 1001
TaiI ACGT 1 cut(s) 695
TaqI TCGA 2 cut(s) 108, 971
TasI AATT 4 cut(s) 255, 498, 705, 1022
TatI WGTACW 3 cut(s) 53, 156, 397
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 4 cut(s) 165, 221, 864, 891
Tru9I TTAA 4 cut(s) 165, 221, 864, 891
TscAI CASTG 3 cut(s) 793, 912, 1006
TseFI GTSAC 4 cut(s) 502, 688, 901, 907
TseI GCWGC 3 cut(s) 118, 809, 935
Tsp45I GTSAC 4 cut(s) 502, 688, 901, 907
TspDTI ATGAA 1 cut(s) 904
TspRI CASTG 3 cut(s) 793, 912, 1006
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 1022
XbaI TCTAGA 1 cut(s) 989
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XmaJI CCTAGG 1 cut(s) 535
XspI CTAG 3 cut(s) 422, 536, 990
ZrmI AGTACT 1 cut(s) 158
Zsp2I ATGCAT 2 cut(s) 988, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.