AT5G25420

Xanthine uracil permease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011640
Physical Location & Seq
Reverse (-)
8838417 .. 8841775
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25420.1

Sequence Viewer

Length: 1260 bp
ATGGCAAATGGAGCCGGCAATGGTGGTGGTGGAGCTGGTGGCAATGGTGGTGGTGGAAACAACGGAGCAGGAAACCGGGCGGAGGAGTTACAACCCCACCCAGTGAAAGAACAACTCCCTGGAATTCAATATTGTGTCAACAGTCCTCCTCCTTGGCTTGAAGCGGTAGTGTTAGGTTTCCAGCATTATTTGTTGAGTCTTGGTATTACAGTTCTCATTCCGAGTCTATTAGTTCCACTCATGGGAGGTGGTGATGCAGAAAAGGTTAAAGTAATACAAACATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTTTGGAACTCGATTGCCTGTGATCGCTTCGGCTTCTTATGCCTATATCATTCCTATCACTTCCATCATTTATTCCACCAGATTCACTTACTACACGGATCCTTTTGAAAGGTTTGTGAGAACAATGAGAAGCATACAAGGAGCTCTGATTATCACTGGTTGTTTTCAAGTTCTTGTCTGTTTCCTCGGTGTATGGAGAAATATTGTGAGATTTCTAAGCCCTCTGTCGATTGCTCCTTTGGTAACATTTACCGGATTGGGACTCTACCACATTGGTTTCCCTTTGGTGAAGAAAGGACCGATGATTTGGGATGGAAATAGATGTGACCGTTATGGAATGATGTTATGCATTCCAGTGGTATGGTTGTTCGCTCAGCTACTCACATCGAGTGGTGTTTATGACCACAAGCCTCAAACTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTAATCACCAACACTCCTTGTCCAACTTTCGACATCACTGATTCTTTTGCGATGATGGCTGCATCTTTTGTCACTCTCTTTGAGTCGACTGGTTTGTTCTATGCATCGGCAAGATATGGAAAAAATGTTGGACTTTTAGCAATGACTAAGGTTGGGAGTCGAAGGGTGATACAAATATCAGCAGCATTCATGCTTTTTTTCTCCATTTTTGGAAAATTTGGAGCTTTTTTTGCGTCCATACCATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGCGGGACTTAGCTTTCTACAATTTTGCAACCTCAATAGCTTCAACACCAAATTCATTTTGGGATTTTCTTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAGTTGGCAGATGTGATAAGAGTGATATTCATGTCACATACAACGGTTGCGGCAATAATTGCGATAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

419

Amino Acids

45.66

Weight (kDa)

8.92

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 54 - 206 6.9e-19 Permease family
Xan_ur_permease PF00860 275 - 390 1.2e-17 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65550 AT5G25420
fragaria_vesca FvH4_2g32910
malus_domestica MD04G1056000.v1.1 MD15G1067600.v1.1
prunus_persica Prupe.1G421500_v2.0.a1
pyrus_communis pycom04g04930
rosa_chinensis RchiOBHm_Chr6g0309811
rosa_laevigata RLG00000010534
rosa_multiflora Rmu_co8452475.1_g000001 Rmu_sc0011006.1_g000001 Rmu_ssc0000373.1_g000005
rosa_roxburghii Rroxscaffold_7G00159160
rosa_rugosa Rorug06G0375000
rosa_samantha Rh6AG488300 Rh6BG497900 Rh6CG502700 Rh6DG488800
rosa_wichuraiana Rw6G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 860
AciI CCGC 4 cut(s) 80, 164, 1070, 1236
AclWI GGATC 2 cut(s) 416, 429
AcsI RAATTY 3 cut(s) 123, 989, 1118
AcuI CTGAAG 1 cut(s) 1153
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 2 cut(s) 760, 769
AfiI CCNNNNNNNGG 2 cut(s) 82, 242
AgsI TTSAA 6 cut(s) 128, 161, 431, 491, 1111, 1155
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 6 cut(s) 35, 467, 700, 998, 1080, 1107
AluI AGCT 6 cut(s) 35, 467, 700, 998, 1080, 1107
Alw21I GWGCWC 1 cut(s) 469
AlwI GGATC 2 cut(s) 416, 429
ApeKI GCWGC 2 cut(s) 833, 956
ApoI RAATTY 3 cut(s) 123, 989, 1118
ArsI GACNNNNNNTTYG 4 cut(s) 612, 644, 739, 771
AspS9I GGNCC 1 cut(s) 620
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 263, 622, 772, 952
AvaII GGWCC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 1056
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 820, 968
BccI CCATC 3 cut(s) 395, 629, 823
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 77
BisI GCNGC 3 cut(s) 834, 957, 1237
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 3 cut(s) 835, 958, 1238
Bme1390I CCNGG 2 cut(s) 77, 120
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 2 cut(s) 13, 423
BmrFI CCNGG 2 cut(s) 77, 120
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 5 cut(s) 244, 845, 887, 1040, 1053
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 1056
Bpu1102I GCTNAGC 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 118, 152, 508
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 2 cut(s) 772, 802
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 242
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 7 cut(s) 101, 316, 484, 677, 750, 775, 868
Bse3DI GCAATG 3 cut(s) 25, 49, 921
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 118, 152, 508
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 82, 242
BseMI GCAATG 3 cut(s) 25, 49, 921
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 7 cut(s) 101, 316, 484, 677, 750, 775, 868
BseRI GAGGAG 2 cut(s) 98, 138
BseXI GCAGC 2 cut(s) 820, 968
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 3 cut(s) 15, 76, 576
BslFI GGGAC 2 cut(s) 597, 1086
BslI CCNNNNNNNGG 2 cut(s) 82, 242
BsmFI GGGAC 2 cut(s) 597, 1086
BsmI GAATGC 2 cut(s) 672, 959
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 3 cut(s) 345, 421, 763
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 4 cut(s) 80, 164, 1070, 1236
BspCNI CTCAG 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 13, 423
BspPI GGATC 2 cut(s) 416, 429
BsrDI GCAATG 3 cut(s) 25, 49, 921
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 7 cut(s) 101, 316, 484, 677, 750, 775, 868
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 118, 152, 508
BssMI GATC 3 cut(s) 345, 421, 763
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 143, 211, 653, 1232
BstAPI GCANNNNNTGC 1 cut(s) 1245
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 539, 696, 921, 1076
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 3 cut(s) 348, 424, 766
BstMBI GATC 3 cut(s) 345, 421, 763
BstMWI GCNNNNNNNGC 5 cut(s) 11, 362, 830, 1004, 1245
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 75, 118
BstV1I GCAGC 2 cut(s) 820, 968
BstV2I GAAGAC 1 cut(s) 1056
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 684
BstYI RGATCY 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 839
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 4 cut(s) 108, 477, 684, 810
Cac8I GCNNGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 620
CseI GACGC 1 cut(s) 996
Csp6I GTAC 2 cut(s) 759, 768
CspCI CAANNNNNGTGG 4 cut(s) 7, 31, 42, 66
CviAII CATG 5 cut(s) 241, 964, 1027, 1144, 1217
CviQI GTAC 2 cut(s) 759, 768
DdeI CTNAG 4 cut(s) 539, 696, 921, 1076
DpnI GATC 3 cut(s) 347, 423, 765
DpnII GATC 3 cut(s) 345, 421, 763
DraIII CACNNNGTG 1 cut(s) 103
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 1153
EcoICRI GAGCTC 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 152
EcoT22I ATGCAT 2 cut(s) 674, 880
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 5 cut(s) 244, 967, 1030, 1147, 1220
FaqI GGGAC 2 cut(s) 597, 1086
FatI CATG 5 cut(s) 240, 963, 1026, 1143, 1216
FauI CCCGC 1 cut(s) 1063
FblI GTMKAC 1 cut(s) 860
Fnu4HI GCNGC 3 cut(s) 834, 957, 1237
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 3 cut(s) 834, 957, 1237
GluI GCNGC 3 cut(s) 834, 957, 1237
HapII CCGG 3 cut(s) 15, 76, 576
HgaI GACGC 1 cut(s) 996
Hin1II CATG 5 cut(s) 244, 967, 1030, 1147, 1220
HincII GTYRAC 2 cut(s) 139, 861
HindII GTYRAC 2 cut(s) 139, 861
HinfI GANTC 7 cut(s) 196, 223, 405, 585, 815, 857, 931
HpaII CCGG 3 cut(s) 15, 76, 576
HphI GGTGA 4 cut(s) 263, 622, 772, 952
Hpy166II GTNNAC 2 cut(s) 139, 861
Hpy188I TCNGA 3 cut(s) 222, 471, 1172
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 2 cut(s) 139, 861
HpyAV CCTTC 1 cut(s) 930
HpyCH4III ACNGT 4 cut(s) 143, 211, 653, 1232
HpyCH4V TGCA 6 cut(s) 257, 672, 836, 878, 1044, 1095
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 362, 830, 1004, 1245
HpyF3I CTNAG 4 cut(s) 539, 696, 921, 1076
Hsp92II CATG 5 cut(s) 244, 967, 1030, 1147, 1220
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 3 cut(s) 345, 421, 763
LmnI GCTCC 6 cut(s) 11, 32, 65, 464, 562, 995
Lsp1109I GCAGC 2 cut(s) 820, 968
LweI GCATC 5 cut(s) 244, 845, 887, 1040, 1053
MaeIII GTNAC 5 cut(s) 87, 565, 647, 844, 1219
MalI GATC 3 cut(s) 347, 423, 765
MboI GATC 3 cut(s) 345, 421, 763
MboII GAAGA 2 cut(s) 625, 1056
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 5 cut(s) 123, 989, 1088, 1118, 1243
MlyI GAGTC 5 cut(s) 205, 232, 579, 866, 940
MmeI TCCRAC 2 cut(s) 821, 883
MnlI CCTC 8 cut(s) 76, 156, 159, 239, 518, 555, 744, 1109
Mph1103I ATGCAT 2 cut(s) 674, 880
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 2 cut(s) 267, 302
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 3 cut(s) 15, 76, 576
MspR9I CCNGG 2 cut(s) 77, 120
Mva1269I GAATGC 2 cut(s) 672, 959
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 11, 362, 830, 1004, 1245
NaeI GCCGGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 345, 421, 763
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 5 cut(s) 244, 967, 1030, 1147, 1220
NlaIV GGNNCC 2 cut(s) 13, 423
NmuCI GTSAC 3 cut(s) 647, 844, 1219
NsiI ATGCAT 2 cut(s) 674, 880
PcsI WCGNNNNNNNCGW 1 cut(s) 763
PctI GAATGC 2 cut(s) 672, 959
PdiI GCCGGC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 405, 815
PkrI GCNGC 3 cut(s) 835, 958, 1238
PleI GAGTC 5 cut(s) 204, 231, 579, 865, 939
PpsI GAGTC 5 cut(s) 204, 231, 579, 865, 939
Psp124BI GAGCTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 13, 423
PspPI GGNCC 1 cut(s) 620
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 2 cut(s) 760, 769
RsaNI GTAC 2 cut(s) 759, 768
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 469
SalI GTCGAC 1 cut(s) 859
SaqAI TTAA 2 cut(s) 267, 302
SatI GCNGC 3 cut(s) 834, 957, 1237
Sau3AI GATC 3 cut(s) 345, 421, 763
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 5 cut(s) 205, 232, 579, 866, 940
ScrFI CCNGG 2 cut(s) 77, 120
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 5 cut(s) 244, 845, 887, 1040, 1053
SinI GGWCC 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 5 cut(s) 123, 989, 1088, 1118, 1243
SsiI CCGC 4 cut(s) 80, 164, 1070, 1236
SspI AATATT 2 cut(s) 131, 526
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 75, 118
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 143, 211, 653, 1232
TaqI TCGA 6 cut(s) 334, 551, 710, 804, 860, 934
TaqII GACCGA 1 cut(s) 637
TasI AATT 5 cut(s) 123, 989, 1088, 1118, 1243
TauI GCSGC 1 cut(s) 1239
TfiI GAWTC 2 cut(s) 405, 815
Tru1I TTAA 2 cut(s) 267, 302
Tru9I TTAA 2 cut(s) 267, 302
TscAI CASTG 4 cut(s) 108, 484, 684, 817
TseFI GTSAC 3 cut(s) 647, 844, 1219
TseI GCWGC 2 cut(s) 833, 956
Tsp45I GTSAC 3 cut(s) 647, 844, 1219
TspDTI ATGAA 4 cut(s) 952, 1111, 1132, 1205
TspGWI ACGGA 2 cut(s) 78, 434
TspRI CASTG 4 cut(s) 108, 484, 684, 817
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 3 cut(s) 123, 989, 1118
XcmI CCANNNNNNNNNTGG 2 cut(s) 323, 1123
XmiI GTMKAC 1 cut(s) 860
Zsp2I ATGCAT 2 cut(s) 674, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.