FvH4_2g32910

nucleobase-ascorbate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24824774 .. 24828071
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32910.t1

Sequence Viewer

Length: 1698 bp
ATGGCTCAATGCGGTGGTTGCAACAACAATGACAAGAGTAACGGCGGTGGTGACTGCGACAGTCACAAGAGTACCAACAAGGGTGGTAACACTAAGACTGGTGGCAAGAATAAGAACAATGATGGCGGCGGCGACAAAAAGTCCGAGGAGTTGCAACCACACCCACTAAAAGAGCAGCTACCAGGAGTTCAGTACTGTGTTAACAGTCCTCCTCCTTGGATTGAAGCTATAGTGTTGGGTTTCCAACACTATCTTTTAACTCTTGGTATTACTGTCTTGATTCCCAACATAATTGTTCCTCAAATGGGTGGAAGCGATGTTGAGAAAGCTAAGGTGGTACAAACCATGCTGTTTCTTTCAGGGTTGAATACACTCTTGCAATCTCTATTTGGGACCAGACTTCCCTCAGTGGTAGTGGGATCATATGCTTATGTGCTCCCCACAACTTCAATAATCCTAGCCAATAGATACAAGGCATTCACAGATCCTCATGAGAGGTTTCTACAAAGTATGAGAGGCATACAAGGGGCTCTAATTGTCACTGCCAGTTTTCAGATGATTGTAGGCTTCCTAGGCTTGTGGAGAAATGTTGTAAGGTTTTTGAGCCCTCTTTCTATTGTGCCTTACATAACCTTTGCTGGACTTGGCCTCTATCATCTTGGTTTCCCTATGGTGGCAAGATGTGTTGAACTTGGTCTTCCAGAACTGATCATCGTGGTATTCATCTCACAGTATTTATCTCGTTTTATAAATACAAAGTGGCAGATATTTGACAGATTTGCAGTCATGTTCTCTGTTGCAATTGTATGGTTATTTGCACAAATTCTTACCTCAAGTGGTGTTTATGACAACAAACCTGCAAGCACTCAGATGAGTTGTCGCACTGACCGTTCTGGCCTTCTTGCTGCATCTCCCTGGATATATATTCCATATCCATTTCAATGGGGAAGCCCCACTTTCAATGCAGGAGAAGCTTTGGCAATGGTTGCTGCCTCTTTAGTTTCTCTCATAGAGTCATCTGGTACATTTTATGCTACAGCTAGATACGGGAGTGCCACACCTGTACCCCCTTCTGTTGTTAGTCGTGGTGTTGGCTGGCTAGGTGTTGGAGTTTTTCTTAATGGGATGTTCGGTTCTCTAACTGGCACTACTGCATCAGTGGAAAATGCTGGTCTATTAGCATTGACAAGAGTTGGAAGCCGTAGAGTTATCCAGATATCAGCCGGTTTCATGATATTCTTCTCTATATTTGGAAAATTTGGGGCCCTTTTTTCATCTATTCCCATGCCAATCATAGCAGCTCTTTACTGCATCTTATTTGGCTATGTTTCATCTGCTGGACTTGGGTTTCTGCAGTTTTGTAACTTGAACAGTTTCAGAACAAAATTTATATTGGGGTTCTCTTTCTTCATGGGAATTTCAGTACCACAATACTTCAGAGAATATAGGTTGGGGCATAATCACTGTGGTCCTAGATGGTTTAATGATGTAGTGACAGTGACCTTCATGTCTCACACGTTAGTAGCTGCTCTGGTTGCTCTCATATTTGACTGCTCGCTGTCTCGAGAAAATGATGCAACTAGAAAAGACAGCGGCTTGAACTGGTGGGCGAAGTTTGGGGTTTATGGTTCTGATGTTAGGAATGATGAGTTCTATGCATTACCATGTAGTCTGGACAAGCTTTTCCCAGCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

61.71

Weight (kDa)

9.07

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 76 - 479 2.1e-62 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011640)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AasI GACNNNNNNGTC 1 cut(s) 1507
Acc36I ACCTGC 1 cut(s) 865
AciI CCGC 5 cut(s) 12, 45, 126, 129, 1593
AclWI GGATC 2 cut(s) 427, 479
AcsI RAATTY 4 cut(s) 822, 1256, 1385, 1416
AcuI CTGAAG 1 cut(s) 1420
AfaI GTAC 6 cut(s) 73, 194, 339, 1024, 1065, 1425
AfiI CCNNNNNNNGG 2 cut(s) 305, 673
AflIII ACRYGT 1 cut(s) 1515
AgsI TTSAA 8 cut(s) 224, 367, 450, 689, 941, 961, 1369, 1600
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 181, 914
AloI GAACNNNNNNTCC 2 cut(s) 1117, 1149
AluBI AGCT 9 cut(s) 178, 227, 329, 974, 1040, 1301, 1526, 1681, 1691
AluI AGCT 9 cut(s) 178, 227, 329, 974, 1040, 1301, 1526, 1681, 1691
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 2 cut(s) 1515, 1566
AlwI GGATC 2 cut(s) 427, 479
Ama87I CYCGRG 1 cut(s) 1563
AoxI GGCC 3 cut(s) 646, 895, 1263
ApaI GGGCCC 1 cut(s) 1267
ApeKI GCWGC 5 cut(s) 175, 905, 989, 1298, 1526
ApoI RAATTY 4 cut(s) 822, 1256, 1385, 1416
Asp700I GAANNNNTTC 1 cut(s) 1373
AspA2I CCTAGG 1 cut(s) 571
AspS9I GGNCC 4 cut(s) 393, 1263, 1264, 1469
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 1563
AvaII GGWCC 2 cut(s) 393, 1469
AvrII CCTAGG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 1267
BaeI ACNNNNGTAYC 6 cut(s) 55, 88, 1036, 1047, 1069, 1080
BanII GRGCYC 3 cut(s) 532, 608, 1267
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 5 cut(s) 187, 892, 976, 1310, 1513
BccI CCATC 2 cut(s) 116, 1470
BceAI ACGGC 2 cut(s) 58, 1185
BciT130I CCWGG 2 cut(s) 183, 916
BclI TGATCA 1 cut(s) 708
BcoDI GTCTC 2 cut(s) 1515, 1566
BfaI CTAG 6 cut(s) 458, 572, 1041, 1100, 1473, 1581
BfmI CTRYAG 3 cut(s) 228, 1035, 1352
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 8 cut(s) 127, 130, 176, 906, 990, 1299, 1527, 1594
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 8 cut(s) 128, 131, 177, 907, 991, 1300, 1528, 1595
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 183, 916
Bme18I GGWCC 2 cut(s) 393, 1469
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 1563
BmgT120I GGNCC 4 cut(s) 393, 1263, 1264, 1469
BmiI GGNNCC 3 cut(s) 394, 1264, 1265
BmrFI CCNGG 2 cut(s) 183, 916
BmsI GCATC 4 cut(s) 917, 1163, 1320, 1564
BpiI GAAGAC 1 cut(s) 689
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 817
BsaJI CCNNGG 4 cut(s) 144, 215, 571, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 673
Bse118I RCCGGY 1 cut(s) 1223
Bse1I ACTGG 4 cut(s) 103, 546, 1147, 1607
Bse3DI GCAATG 1 cut(s) 987
BseBI CCWGG 2 cut(s) 183, 916
BseDI CCNNGG 4 cut(s) 144, 215, 571, 914
BseGI GGATG 1 cut(s) 1131
BseLI CCNNNNNNNGG 2 cut(s) 305, 673
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 2 cut(s) 420, 881
BseNI ACTGG 4 cut(s) 103, 546, 1147, 1607
BseRI GAGGAG 2 cut(s) 161, 201
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 5 cut(s) 187, 892, 976, 1310, 1513
BseYI CCCAGC 1 cut(s) 1687
BshFI GGCC 3 cut(s) 648, 897, 1265
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 1563
BsiSI CCGG 1 cut(s) 1224
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 305, 673
BsmAI GTCTC 2 cut(s) 1515, 1566
BsmFI GGGAC 1 cut(s) 406
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 3 cut(s) 648, 897, 1265
BsoBI CYCGRG 1 cut(s) 1563
Bsp120I GGGCCC 1 cut(s) 1263
Bsp1286I GDGCHC 4 cut(s) 438, 532, 608, 1267
Bsp143I GATC 3 cut(s) 419, 484, 708
BspACI CCGC 5 cut(s) 12, 45, 126, 129, 1593
BspANI GGCC 3 cut(s) 648, 897, 1265
BspCNI CTCAG 2 cut(s) 419, 880
BspHI TCATGA 2 cut(s) 490, 1230
BspLI GGNNCC 3 cut(s) 394, 1264, 1265
BspMAI CTGCAG 1 cut(s) 1356
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 2 cut(s) 427, 479
BsrDI GCAATG 1 cut(s) 987
BsrFI RCCGGY 1 cut(s) 1223
BsrI ACTGG 4 cut(s) 103, 546, 1147, 1607
BssAI RCCGGY 1 cut(s) 1223
BssECI CCNNGG 4 cut(s) 144, 215, 571, 914
BssMI GATC 3 cut(s) 419, 484, 708
BssT1I CCWWGG 2 cut(s) 215, 571
Bst2UI CCWGG 2 cut(s) 183, 916
Bst4CI ACNGT 9 cut(s) 62, 197, 206, 274, 732, 890, 1373, 1466, 1498
BstAPI GCANNNNNTGC 1 cut(s) 986
BstC8I GCNNGC 3 cut(s) 862, 1097, 1556
BstDEI CTNAG 4 cut(s) 93, 330, 406, 867
BstF5I GGATG 1 cut(s) 1131
BstKTI GATC 3 cut(s) 422, 487, 711
BstMAI GTCTC 2 cut(s) 1515, 1566
BstMBI GATC 3 cut(s) 419, 484, 708
BstMWI GCNNNNNNNGC 5 cut(s) 18, 573, 971, 986, 1535
BstNI CCWGG 2 cut(s) 183, 916
BstSCI CCNGG 2 cut(s) 181, 914
BstSFI CTRYAG 3 cut(s) 228, 1035, 1352
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 5 cut(s) 187, 892, 976, 1310, 1513
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 942
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 3 cut(s) 648, 897, 1265
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 1131
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 6 cut(s) 414, 540, 882, 1164, 1462, 1503
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 862, 1097, 1556
CciI TCATGA 2 cut(s) 490, 1230
Cfr10I RCCGGY 1 cut(s) 1223
Cfr13I GGNCC 4 cut(s) 393, 1263, 1264, 1469
Csp6I GTAC 6 cut(s) 72, 193, 338, 1023, 1064, 1424
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 8 cut(s) 346, 491, 787, 1231, 1285, 1411, 1507, 1665
CviQI GTAC 6 cut(s) 72, 193, 338, 1023, 1064, 1424
DdeI CTNAG 4 cut(s) 93, 330, 406, 867
DpnI GATC 3 cut(s) 421, 486, 710
DpnII GATC 3 cut(s) 419, 484, 708
DrdI GACNNNNNNGTC 1 cut(s) 1507
DriI GACNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 1507
Eam1105I GACNNNNNGTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 215, 571
Eco24I GRGCYC 3 cut(s) 532, 608, 1267
Eco32I GATATC 1 cut(s) 1218
Eco47I GGWCC 2 cut(s) 393, 1469
Eco57I CTGAAG 1 cut(s) 1420
Eco88I CYCGRG 1 cut(s) 1563
EcoO109I RGGNCCY 2 cut(s) 1263, 1264
EcoRII CCWGG 2 cut(s) 181, 914
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 2 cut(s) 215, 571
EcoT22I ATGCAT 1 cut(s) 1660
EcoT38I GRGCYC 3 cut(s) 532, 608, 1267
ErhI CCWWGG 2 cut(s) 215, 571
FaeI CATG 8 cut(s) 349, 494, 790, 1234, 1288, 1414, 1510, 1668
FalI AAGNNNNNCTT 2 cut(s) 940, 972
FaqI GGGAC 1 cut(s) 406
FatI CATG 8 cut(s) 345, 490, 786, 1230, 1284, 1410, 1506, 1664
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 8 cut(s) 127, 130, 176, 906, 990, 1299, 1527, 1594
FokI GGATG 1 cut(s) 1138
FriOI GRGCYC 3 cut(s) 532, 608, 1267
Fsp4HI GCNGC 8 cut(s) 127, 130, 176, 906, 990, 1299, 1527, 1594
FspBI CTAG 6 cut(s) 458, 572, 1041, 1100, 1473, 1581
GluI GCNGC 8 cut(s) 127, 130, 176, 906, 990, 1299, 1527, 1594
GsaI CCCAGC 1 cut(s) 1691
HaeIII GGCC 3 cut(s) 648, 897, 1265
HapII CCGG 1 cut(s) 1224
Hin1II CATG 8 cut(s) 349, 494, 790, 1234, 1288, 1414, 1510, 1668
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 972, 1679
HinfI GANTC 2 cut(s) 280, 1013
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 1224
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 6 cut(s) 145, 555, 870, 1379, 1439, 1633
Hpy188III TCNNGA 8 cut(s) 277, 491, 701, 1213, 1231, 1563, 1565, 1673
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 908, 1080, 1513
HpyCH4III ACNGT 9 cut(s) 62, 197, 206, 274, 732, 890, 1373, 1466, 1498
HpyCH4IV ACGT 1 cut(s) 1517
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 573, 971, 986, 1535
HpyF3I CTNAG 4 cut(s) 93, 330, 406, 867
HpySE526I ACGT 1 cut(s) 1517
Hsp92II CATG 8 cut(s) 349, 494, 790, 1234, 1288, 1414, 1510, 1668
Ksp22I TGATCA 1 cut(s) 708
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 419, 484, 708
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 5 cut(s) 187, 892, 976, 1310, 1513
LweI GCATC 4 cut(s) 917, 1163, 1320, 1564
MaeI CTAG 6 cut(s) 458, 572, 1041, 1100, 1473, 1581
MaeII ACGT 1 cut(s) 1517
MaeIII GTNAC 8 cut(s) 38, 50, 62, 86, 538, 1361, 1492, 1498
MalI GATC 3 cut(s) 421, 486, 710
MboI GATC 3 cut(s) 419, 484, 708
MboII GAAGA 3 cut(s) 689, 1231, 1399
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 4 cut(s) 438, 532, 608, 1267
MluCI AATT 7 cut(s) 291, 534, 801, 822, 1256, 1385, 1416
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 3 cut(s) 268, 1087, 1174
Mph1103I ATGCAT 1 cut(s) 1660
MroXI GAANNNNTTC 1 cut(s) 1373
MseI TTAA 5 cut(s) 201, 257, 1119, 1482, 1696
MslI CAYNNNNRTG 3 cut(s) 869, 940, 1663
MspA1I CMGCKG 1 cut(s) 1593
MspI CCGG 1 cut(s) 1224
MspR9I CCNGG 2 cut(s) 183, 916
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 183, 916
MwoI GCNNNNNNNGC 5 cut(s) 18, 573, 971, 986, 1535
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 419, 484, 708
NlaIII CATG 8 cut(s) 349, 494, 790, 1234, 1288, 1414, 1510, 1668
NlaIV GGNNCC 3 cut(s) 394, 1264, 1265
NmuCI GTSAC 5 cut(s) 50, 62, 538, 1492, 1498
NsiI ATGCAT 1 cut(s) 1660
PaeR7I CTCGAG 1 cut(s) 1563
PagI TCATGA 2 cut(s) 490, 1230
PcsI WCGNNNNNNNCGW 1 cut(s) 886
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 8 cut(s) 128, 131, 177, 907, 991, 1300, 1528, 1595
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 181, 914
PspFI CCCAGC 1 cut(s) 1687
PspGI CCWGG 2 cut(s) 181, 914
PspN4I GGNNCC 3 cut(s) 394, 1264, 1265
PspOMI GGGCCC 1 cut(s) 1263
PspPI GGNCC 4 cut(s) 393, 1263, 1264, 1469
PstI CTGCAG 1 cut(s) 1356
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 6 cut(s) 73, 194, 339, 1024, 1065, 1425
RsaNI GTAC 6 cut(s) 72, 193, 338, 1023, 1064, 1424
RseI CAYNNNNRTG 3 cut(s) 869, 940, 1663
SaqAI TTAA 5 cut(s) 201, 257, 1119, 1482, 1696
SatI GCNGC 8 cut(s) 127, 130, 176, 906, 990, 1299, 1527, 1594
Sau3AI GATC 3 cut(s) 419, 484, 708
Sau96I GGNCC 4 cut(s) 393, 1263, 1264, 1469
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 2 cut(s) 183, 916
SduI GDGCHC 4 cut(s) 438, 532, 608, 1267
SfaNI GCATC 4 cut(s) 917, 1163, 1320, 1564
SfcI CTRYAG 3 cut(s) 228, 1035, 1352
Sfr274I CTCGAG 1 cut(s) 1563
SinI GGWCC 2 cut(s) 393, 1469
SlaI CTCGAG 1 cut(s) 1563
SmiMI CAYNNNNRTG 3 cut(s) 869, 940, 1663
SmlI CTYRAG 2 cut(s) 832, 1563
SmoI CTYRAG 2 cut(s) 832, 1563
Sse9I AATT 7 cut(s) 291, 534, 801, 822, 1256, 1385, 1416
SsiI CCGC 5 cut(s) 12, 45, 126, 129, 1593
SspMI CTAG 6 cut(s) 458, 572, 1041, 1100, 1473, 1581
StyD4I CCNGG 2 cut(s) 181, 914
StyI CCWWGG 2 cut(s) 215, 571
TaaI ACNGT 9 cut(s) 62, 197, 206, 274, 732, 890, 1373, 1466, 1498
TaiI ACGT 1 cut(s) 1520
TaqI TCGA 1 cut(s) 1564
TasI AATT 7 cut(s) 291, 534, 801, 822, 1256, 1385, 1416
TatI WGTACW 1 cut(s) 192
TauI GCSGC 3 cut(s) 129, 132, 1596
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 5 cut(s) 201, 257, 1119, 1482, 1696
Tru9I TTAA 5 cut(s) 201, 257, 1119, 1482, 1696
TscAI CASTG 6 cut(s) 414, 547, 889, 1164, 1469, 1503
TseFI GTSAC 5 cut(s) 50, 62, 538, 1492, 1498
TseI GCWGC 5 cut(s) 175, 905, 989, 1298, 1526
Tsp45I GTSAC 5 cut(s) 50, 62, 538, 1492, 1498
TspDTI ATGAA 6 cut(s) 712, 1219, 1263, 1320, 1399, 1495
TspRI CASTG 6 cut(s) 414, 547, 889, 1164, 1469, 1503
VpaK11BI GGWCC 2 cut(s) 393, 1469
XapI RAATTY 4 cut(s) 822, 1256, 1385, 1416
XhoI CTCGAG 1 cut(s) 1563
XmaJI CCTAGG 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 6 cut(s) 458, 572, 1041, 1100, 1473, 1581
ZrmI AGTACT 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 1660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.