RchiOBHm_Chr6g0309811

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011640
Physical Location & Seq
Forward (+)
67309321 .. 67312749
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27859

Sequence Viewer

Length: 1662 bp
ATGGCCCAATGCGGTGGTGGCAACAACGACAAGAGTAATGGCGGTGGTGGTTGTACTTGTAGTGGCAAGAAGAAGATCAATGGTGATGGTGGCCGCGACAAAAAGTTCGAGGAGTTGCAGCCACACCCAATAAAAGAGCAGTTACCAGGAGTTCAGTACTGTGTTAACAGTCCTCCTCCATGGACTGAAGCTATAGTGTTGGGTTTCCAGCACTATCTTTTAACTCTTGGTATTACTGTCTTGATTCCAAACACAATTGTTCCTCAAATGGGCGGAGGCGATGTTGAGAAGGCTAGGGTGGTACAAACCATGCTCTTTCTTTCAGGGTTGAACACACTCTTGCAATCTCTATTTGGGACCAGACTTCCCTCGGTGGTAGTGGGATCATATACTTATGTACTCCCCGCAACTTCAATAATCCTAGCCAATAGATACAAGGCATTCACAGATCCTCATGAGAGGTTTTTACAAAGTATGAGAGGCATACAAGGGGCTCTAATTGTCACCGCCAGTTTTCAGATGATTGTGGGCTTCCTAGGCTTGTGGAGAAATGTTGTAAGGTTTCTGAGCCCTCTTTCTATTGTGCCGTACATAACCTTTGCTGGACTTGGCCTCTATCATCTTGGTTTCCCTATGTTGGCAAGATGTGTTGAACTTGGTCTTCCAGAGTTGATCATCGTGGTATTCATCTCACAGTATCTTTCTCGTTTTATAAATACAAAGTGGCAGATATTTGACAGATTTGCAGTCACGTTCTCTGTTGGAATTGTGTGGTTATTTGCACAACTTCTTACCTCAAGTGGTGTTTATGACAACAAACCTGCGAGCACTCAGATGAGTTGTCGCACTGACCGTTCTGGCCTTCTTGCTGCATCTCCCTGGATATACATTCCATATCCATTTCAATGGGGAAGCCCCACTTTTAATGCAGGAGAAGCTTTTGCAATGGTTGCTGCCTCTTTAGTTTCTCTCATAGAGTCGTCTGGTACATTTTATGCTACAGCAAGATATGGGAGTGCAACACCTGTACCCCCTTCTGTCGTTAGTCGGGGTGTTGGCTGGCTAGGTGTTGGAGTTTTTCTGAATGGGATGTTTGGTTCTCTAACTGGCACTACTGCATCAGTTGAAAATGCTGGTCTATTGGCATTGACAAGAGTTGGAAGCCGTAGAGTTATCCAAATTTCAGCTGGTTTCATGATATTCTTCTCTATATTTGGAAAATGTGGAGCCCTTTTTGCATCTATTCCCATGCCAATCATAGCAGCTCTTTACTGCATCTTATTTGGCTATGTTTCATCTGCTGGTCTTGGTTTTCTACAGTTCTGTAACTTGAACAGTTTCAGAACAAAATTTATATTGGGGTTCTCTTTCTTCATGGGAATTTCAGTACCACAATACTTCAGAGAATATAGGTTGGGGCATATTCACTGTGGTCCTAGATGGTTTAATGATGTAGTGACAGTGACCTTCATGTCTCACACATTAGTAGCTGCTCTGGTTGCTCTTATACTGGACTGCTCGCTTTCGCGAGAAAATGATGCATCTAGAAAAGACAGTGGCTTGAACTGGTGGGCGAAATTTGGGGTATATGGTTCTGATGTTAGGAATGATGAGTTCTATGCATTACCATGCAGTCTGGACAAGCTTTTCCCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

553

Amino Acids

60.37

Weight (kDa)

9.13

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 63 - 467 2.2e-58 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65550 AT5G25420
fragaria_vesca FvH4_2g32910
malus_domestica MD04G1056000.v1.1 MD15G1067600.v1.1
prunus_persica Prupe.1G421500_v2.0.a1
pyrus_communis pycom04g04930
rosa_chinensis RchiOBHm_Chr6g0309811
rosa_laevigata RLG00000010534
rosa_multiflora Rmu_co8452475.1_g000001 Rmu_sc0011006.1_g000001 Rmu_ssc0000373.1_g000005
rosa_roxburghii Rroxscaffold_7G00159160
rosa_rugosa Rorug06G0375000
rosa_samantha Rh6AG488300 Rh6BG497900 Rh6CG502700 Rh6DG488800
rosa_wichuraiana Rw6G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
AasI GACNNNNNNGTC 1 cut(s) 1471
Acc36I ACCTGC 1 cut(s) 829
AccII CGCG 2 cut(s) 96, 1528
AciI CCGC 6 cut(s) 12, 42, 94, 273, 405, 507
AclWI GGATC 2 cut(s) 391, 443
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 4 cut(s) 1179, 1349, 1380, 1577
AcuI CTGAAG 2 cut(s) 207, 1384
AfaI GTAC 8 cut(s) 55, 158, 303, 399, 590, 988, 1029, 1389
AfiI CCNNNNNNNGG 2 cut(s) 269, 637
AgsI TTSAA 7 cut(s) 331, 414, 653, 905, 1127, 1333, 1564
AjnI CCWGG 2 cut(s) 145, 878
AloI GAACNNNNNNTCC 2 cut(s) 1081, 1113
AluBI AGCT 7 cut(s) 191, 938, 1187, 1265, 1490, 1645, 1655
AluI AGCT 7 cut(s) 191, 938, 1187, 1265, 1490, 1645, 1655
Alw21I GWGCWC 1 cut(s) 830
Alw26I GTCTC 1 cut(s) 1479
AlwI GGATC 2 cut(s) 391, 443
AoxI GGCC 4 cut(s) 3, 91, 610, 859
ApeKI GCWGC 5 cut(s) 118, 869, 953, 1262, 1490
ApoI RAATTY 4 cut(s) 1179, 1349, 1380, 1577
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 1337
AspA2I CCTAGG 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 4, 357, 1433
AsuHPI GGTGA 2 cut(s) 95, 496
AvaII GGWCC 2 cut(s) 357, 1433
AvrII CCTAGG 1 cut(s) 535
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BanII GRGCYC 3 cut(s) 496, 572, 1231
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 830
BbvI GCAGC 5 cut(s) 130, 856, 940, 1274, 1477
BccI CCATC 2 cut(s) 80, 1434
BceAI ACGGC 2 cut(s) 571, 1149
BciT130I CCWGG 2 cut(s) 147, 880
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 1479
BfaI CTAG 6 cut(s) 294, 422, 536, 1064, 1437, 1545
BfmI CTRYAG 3 cut(s) 192, 999, 1316
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 6 cut(s) 94, 119, 870, 954, 1263, 1491
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 6 cut(s) 95, 120, 871, 955, 1264, 1492
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 147, 880
Bme18I GGWCC 2 cut(s) 357, 1433
BmgT120I GGNCC 3 cut(s) 4, 357, 1433
BmiI GGNNCC 2 cut(s) 358, 1228
BmrFI CCNGG 2 cut(s) 147, 880
BmsI GCATC 6 cut(s) 881, 1127, 1247, 1284, 1528, 1550
BpiI GAAGAC 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 781
BsaJI CCNNGG 4 cut(s) 179, 369, 535, 878
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 637
Bse1I ACTGG 4 cut(s) 510, 1111, 1515, 1571
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 2 cut(s) 147, 880
BseDI CCNNGG 4 cut(s) 179, 369, 535, 878
BseGI GGATG 1 cut(s) 1095
BseLI CCNNNNNNNGG 2 cut(s) 269, 637
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 2 cut(s) 557, 845
BseNI ACTGG 4 cut(s) 510, 1111, 1515, 1571
BseRI GAGGAG 2 cut(s) 125, 165
BseXI GCAGC 5 cut(s) 130, 856, 940, 1274, 1477
BseYI CCCAGC 1 cut(s) 1651
Bsh1236I CGCG 2 cut(s) 96, 1528
BshFI GGCC 4 cut(s) 5, 93, 612, 861
BsiHKAI GWGCWC 1 cut(s) 830
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 269, 637
BsmAI GTCTC 1 cut(s) 1479
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 4 cut(s) 5, 93, 612, 861
Bsp1286I GDGCHC 4 cut(s) 496, 572, 830, 1231
Bsp143I GATC 4 cut(s) 75, 383, 448, 672
Bsp19I CCATGG 1 cut(s) 179
Bsp68I TCGCGA 1 cut(s) 1528
BspACI CCGC 6 cut(s) 12, 42, 94, 273, 405, 507
BspANI GGCC 4 cut(s) 5, 93, 612, 861
BspCNI CTCAG 2 cut(s) 558, 844
BspFNI CGCG 2 cut(s) 96, 1528
BspHI TCATGA 2 cut(s) 454, 1194
BspLI GGNNCC 2 cut(s) 358, 1228
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 2 cut(s) 391, 443
BsrDI GCAATG 1 cut(s) 951
BsrI ACTGG 4 cut(s) 510, 1111, 1515, 1571
BssECI CCNNGG 4 cut(s) 179, 369, 535, 878
BssMI GATC 4 cut(s) 75, 383, 448, 672
BssT1I CCWWGG 2 cut(s) 179, 535
Bst2UI CCWGG 2 cut(s) 147, 880
BstAPI GCANNNNNTGC 1 cut(s) 950
BstC8I GCNNGC 3 cut(s) 826, 1061, 1520
BstDEI CTNAG 2 cut(s) 566, 831
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 1095
BstFNI CGCG 2 cut(s) 96, 1528
BstKTI GATC 4 cut(s) 78, 386, 451, 675
BstMAI GTCTC 1 cut(s) 1479
BstMBI GATC 4 cut(s) 75, 383, 448, 672
BstMWI GCNNNNNNNGC 6 cut(s) 18, 537, 935, 950, 1235, 1499
BstNI CCWGG 2 cut(s) 147, 880
BstSCI CCNGG 2 cut(s) 145, 878
BstSFI CTRYAG 3 cut(s) 192, 999, 1316
BstUI CGCG 2 cut(s) 96, 1528
BstV1I GCAGC 5 cut(s) 130, 856, 940, 1274, 1477
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 2 cut(s) 14, 906
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 4 cut(s) 5, 93, 612, 861
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 1095
BtsIMutI CAGTG 4 cut(s) 846, 1426, 1467, 1561
BtuMI TCGCGA 1 cut(s) 1528
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 3 cut(s) 826, 1061, 1520
CciI TCATGA 2 cut(s) 454, 1194
Cfr13I GGNCC 3 cut(s) 4, 357, 1433
Csp6I GTAC 8 cut(s) 54, 157, 302, 398, 589, 987, 1028, 1388
CviAII CATG 8 cut(s) 180, 310, 455, 1195, 1249, 1375, 1471, 1629
CviQI GTAC 8 cut(s) 54, 157, 302, 398, 589, 987, 1028, 1388
DdeI CTNAG 2 cut(s) 566, 831
DpnI GATC 4 cut(s) 77, 385, 450, 674
DpnII GATC 4 cut(s) 75, 383, 448, 672
DrdI GACNNNNNNGTC 1 cut(s) 1471
DseDI GACNNNNNNGTC 1 cut(s) 1471
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 179, 535
Eco24I GRGCYC 3 cut(s) 496, 572, 1231
Eco47I GGWCC 2 cut(s) 357, 1433
Eco57I CTGAAG 2 cut(s) 207, 1384
EcoRII CCWGG 2 cut(s) 145, 878
EcoT14I CCWWGG 2 cut(s) 179, 535
EcoT22I ATGCAT 2 cut(s) 1543, 1624
EcoT38I GRGCYC 3 cut(s) 496, 572, 1231
ErhI CCWWGG 2 cut(s) 179, 535
FaeI CATG 8 cut(s) 183, 313, 458, 1198, 1252, 1378, 1474, 1632
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 1 cut(s) 370
FatI CATG 8 cut(s) 179, 309, 454, 1194, 1248, 1374, 1470, 1628
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 6 cut(s) 94, 119, 870, 954, 1263, 1491
FokI GGATG 1 cut(s) 1102
FriOI GRGCYC 3 cut(s) 496, 572, 1231
Fsp4HI GCNGC 6 cut(s) 94, 119, 870, 954, 1263, 1491
FspBI CTAG 6 cut(s) 294, 422, 536, 1064, 1437, 1545
GluI GCNGC 6 cut(s) 94, 119, 870, 954, 1263, 1491
GsaI CCCAGC 1 cut(s) 1655
HaeIII GGCC 4 cut(s) 5, 93, 612, 861
Hin1II CATG 8 cut(s) 183, 313, 458, 1198, 1252, 1378, 1474, 1632
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 936, 1643
HinfI GANTC 2 cut(s) 244, 977
HpaI GTTAAC 1 cut(s) 166
HphI GGTGA 2 cut(s) 95, 496
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 7 cut(s) 519, 567, 834, 1083, 1343, 1403, 1597
Hpy188III TCNNGA 7 cut(s) 241, 455, 665, 1195, 1527, 1545, 1637
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 283, 872, 1044, 1477
HpyCH4IV ACGT 1 cut(s) 752
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 537, 935, 950, 1235, 1499
HpyF3I CTNAG 2 cut(s) 566, 831
HpySE526I ACGT 1 cut(s) 752
Hsp92II CATG 8 cut(s) 183, 313, 458, 1198, 1252, 1378, 1474, 1632
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 75, 383, 448, 672
LmnI GCTCC 1 cut(s) 1226
Lsp1109I GCAGC 5 cut(s) 130, 856, 940, 1274, 1477
LweI GCATC 6 cut(s) 881, 1127, 1247, 1284, 1528, 1550
MaeI CTAG 6 cut(s) 294, 422, 536, 1064, 1437, 1545
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 6 cut(s) 141, 502, 748, 1325, 1456, 1462
MalI GATC 4 cut(s) 77, 385, 450, 674
MboI GATC 4 cut(s) 75, 383, 448, 672
MboII GAAGA 5 cut(s) 82, 85, 653, 1195, 1363
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 4 cut(s) 496, 572, 830, 1231
MluCI AATT 7 cut(s) 255, 498, 765, 1179, 1349, 1380, 1577
MlyI GAGTC 1 cut(s) 986
MmeI TCCRAC 3 cut(s) 742, 1051, 1138
Mph1103I ATGCAT 2 cut(s) 1543, 1624
MroXI GAANNNNTTC 1 cut(s) 1337
MseI TTAA 4 cut(s) 165, 221, 924, 1446
MslI CAYNNNNRTG 3 cut(s) 833, 904, 1627
MspA1I CMGCKG 1 cut(s) 1187
MspR9I CCNGG 2 cut(s) 147, 880
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 2 cut(s) 147, 880
MvnI CGCG 2 cut(s) 96, 1528
MwoI GCNNNNNNNGC 6 cut(s) 18, 537, 935, 950, 1235, 1499
NcoI CCATGG 1 cut(s) 179
NdeII GATC 4 cut(s) 75, 383, 448, 672
NlaIII CATG 8 cut(s) 183, 313, 458, 1198, 1252, 1378, 1474, 1632
NlaIV GGNNCC 2 cut(s) 358, 1228
NmuCI GTSAC 4 cut(s) 502, 748, 1456, 1462
NruI TCGCGA 1 cut(s) 1528
NsiI ATGCAT 2 cut(s) 1543, 1624
PagI TCATGA 2 cut(s) 454, 1194
PcsI WCGNNNNNNNCGW 1 cut(s) 850
PctI GAATGC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 1337
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 6 cut(s) 95, 120, 871, 955, 1264, 1492
PleI GAGTC 1 cut(s) 985
PpsI GAGTC 1 cut(s) 985
PsiI TTATAA 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 145, 878
PspFI CCCAGC 1 cut(s) 1651
PspGI CCWGG 2 cut(s) 145, 878
PspN4I GGNNCC 2 cut(s) 358, 1228
PspPI GGNCC 3 cut(s) 4, 357, 1433
PsuI RGATCY 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 1187
RruI TCGCGA 1 cut(s) 1528
RsaI GTAC 8 cut(s) 55, 158, 303, 399, 590, 988, 1029, 1389
RsaNI GTAC 8 cut(s) 54, 157, 302, 398, 589, 987, 1028, 1388
RseI CAYNNNNRTG 3 cut(s) 833, 904, 1627
SaqAI TTAA 4 cut(s) 165, 221, 924, 1446
SatI GCNGC 6 cut(s) 94, 119, 870, 954, 1263, 1491
Sau3AI GATC 4 cut(s) 75, 383, 448, 672
Sau96I GGNCC 3 cut(s) 4, 357, 1433
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 1 cut(s) 986
ScrFI CCNGG 2 cut(s) 147, 880
SduI GDGCHC 4 cut(s) 496, 572, 830, 1231
SfaNI GCATC 6 cut(s) 881, 1127, 1247, 1284, 1528, 1550
SfcI CTRYAG 3 cut(s) 192, 999, 1316
SinI GGWCC 2 cut(s) 357, 1433
SmiMI CAYNNNNRTG 3 cut(s) 833, 904, 1627
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 7 cut(s) 255, 498, 765, 1179, 1349, 1380, 1577
SsiI CCGC 6 cut(s) 12, 42, 94, 273, 405, 507
SspMI CTAG 6 cut(s) 294, 422, 536, 1064, 1437, 1545
StyD4I CCNGG 2 cut(s) 145, 878
StyI CCWWGG 2 cut(s) 179, 535
TaiI ACGT 1 cut(s) 755
TaqI TCGA 1 cut(s) 108
TasI AATT 7 cut(s) 255, 498, 765, 1179, 1349, 1380, 1577
TatI WGTACW 3 cut(s) 53, 156, 397
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 4 cut(s) 165, 221, 924, 1446
Tru9I TTAA 4 cut(s) 165, 221, 924, 1446
TscAI CASTG 4 cut(s) 853, 1433, 1467, 1561
TseFI GTSAC 4 cut(s) 502, 748, 1456, 1462
TseI GCWGC 5 cut(s) 118, 869, 953, 1262, 1490
Tsp45I GTSAC 4 cut(s) 502, 748, 1456, 1462
TspDTI ATGAA 5 cut(s) 676, 1183, 1284, 1363, 1459
TspRI CASTG 4 cut(s) 853, 1433, 1467, 1561
VpaK11BI GGWCC 2 cut(s) 357, 1433
XapI RAATTY 4 cut(s) 1179, 1349, 1380, 1577
XbaI TCTAGA 1 cut(s) 1544
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 1184
XmaJI CCTAGG 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 1337
XspI CTAG 6 cut(s) 294, 422, 536, 1064, 1437, 1545
ZrmI AGTACT 1 cut(s) 158
Zsp2I ATGCAT 2 cut(s) 1543, 1624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.