Rroxscaffold_7G00159160

nucleobase-ascorbate transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
2421061 .. 2424350
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159160.1

Sequence Viewer

Length: 1650 bp
ATGGCCCAATGCGGTGGTGGCAACAACGACAAGAGTAATGGCGGTGGTGGTTGTACTTGTAGTGGCAAGAATAAGATCAATGGTGATGGTGGCGGCGACAAAAAGTTCGAGGAGTTGCAGCCACACCCAATAAAGAGCAGTTACCAGGAGTTCAGTACTGTGTTAACAGTCCTCCTCCATGGAGTTCCTGAAGCTGTAGTGTTGGGTTTCCAGCACTATCTTTTAACTCTTGGTATTACCGTCTTGATTCCAAACACAATTGTTCCTCAAATGGGCGGAGGCGATGTTGAGAAGGCTAGGGTAGTACAAACCATGCTCTTTCTTTCAGGGTTGAACACACTCTTGCAATCTCTATTTGGGACCAGACTTCCCTCGGTGGTAGTGGGATCATATACTTATCTACTCCCCACAACTTCAATAATCCTAGCCAATAGATACAAGGCATTCACAGATCCTCACGAGAGGTTTTTACAAAGTATGAGAGGCATACAAGGGGCTCTAATTGTCACCGCCAGTTTTCAGATGATTGTGGGCTTCCTAGGCTTGTGGAGAAATGTTGTAAGGTTTCTGAGCCCTCTTTCTATTGTGCCGTACATAACCTTTGCTGGACTTGGCCTCTATCATCTTGGTTTCCCTATGTTGGCAAGATGTGTTGAACTTGGTCTTCCGGAGTTGATCATCGTGTATCTTTCTCGTTTTATAAATACAAAGTGGCAGATATTTGACAGATTTGCAGTCACGTTCTCTGTTGGAATTGTGTGGTTAGTTGCACAACTTCTTACCTCAAGTGGAGTTTATGACAACAAACCTGCGAGCACTCAGATGAGTTGTCGCACTGACCGTTCTGGCCTTCTCGCTGCATCTCCCTGGATATATATTCCATATCCATTTCAATGGGGAAGCCCCACTTTTAATGCAGGAGAAGCTTTTGCAATGGTTGCTGCCTCTTTAGTTTCTCTCATAGAGTCGTCTGGTACATTTTATGCCACAGCAAGATATGGGAGTGCAACACCTGTACCCCCTTCTGTCGTTAGTCGGGGTGTTGGCTGGCTAGGTGTTGGAGTTTTTCTGAATGGGATGTTTGGTTCTCTAACTGGCACTACTGCATCAGTTGAAAATGCTGGTCTATTGGCATTGACAAGAGTTGGAAGCCGTAGAGTTATCCAAATTTCAGCTGGTTTCATGATATTCTTCTCTATATTTGGAAAATGTGGAGCCCTTTTTGCATCTATTCCCATGCCAATCATAGCAGCTCTTTACTGCATCTTATTTGGCTATGTTTCATCTGCTGGTCTTGGTTTTCTACAATTCTGTAACTTGAACAGTTTCAGAACAAAATTTATATTGGGGTTCTCTTTCTTCATGGGAATTTCAGTACCACAATACTTCAGAGAATATAGGTTGGGGCATATTCACAGTGGTCCTAGATGGTTTAATGATGTAGTGACAGTGACCTTCATGTCTCACACATTAGTAGCTGCTCTGGTTGCTCTGATACTGGACTGCTCGCTTTCGCGAGAAAATGATGCATCTAGAAAAGACAGTGGCTTGAACTGGTGGGCGAAATTTGGGGTGTATGGTTCTGATGTTAGGAATGATGAGTTCTATGCATTACCATGCAGTCTGGACAAGCTTTTCCCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

59.71

Weight (kDa)

9.07

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 65 - 463 5.2e-56 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011640)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AasI GACNNNNNNGTC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 817
AccII CGCG 1 cut(s) 1516
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 5 cut(s) 12, 42, 93, 276, 510
AclWI GGATC 2 cut(s) 394, 446
AcsI RAATTY 4 cut(s) 1167, 1337, 1368, 1565
AcuI CTGAAG 2 cut(s) 210, 1372
AfaI GTAC 7 cut(s) 55, 157, 306, 593, 976, 1017, 1377
AfiI CCNNNNNNNGG 2 cut(s) 272, 640
AgsI TTSAA 7 cut(s) 334, 417, 656, 893, 1115, 1321, 1552
AjnI CCWGG 2 cut(s) 144, 866
AloI GAACNNNNNNTCC 2 cut(s) 1069, 1101
AluBI AGCT 7 cut(s) 194, 926, 1175, 1253, 1478, 1633, 1643
AluI AGCT 7 cut(s) 194, 926, 1175, 1253, 1478, 1633, 1643
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 1 cut(s) 1467
AlwI GGATC 2 cut(s) 394, 446
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 3 cut(s) 3, 613, 847
ApeKI GCWGC 5 cut(s) 118, 857, 941, 1250, 1478
ApoI RAATTY 4 cut(s) 1167, 1337, 1368, 1565
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 1325
AspA2I CCTAGG 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 4, 360, 1421
AsuHPI GGTGA 2 cut(s) 95, 499
AvaII GGWCC 2 cut(s) 360, 1421
AvrII CCTAGG 1 cut(s) 538
BaeI ACNNNNGTAYC 2 cut(s) 999, 1032
BanII GRGCYC 3 cut(s) 499, 575, 1219
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 818
BbvI GCAGC 5 cut(s) 130, 844, 928, 1262, 1465
BccI CCATC 2 cut(s) 80, 1422
BceAI ACGGC 2 cut(s) 574, 1137
BciT130I CCWGG 2 cut(s) 146, 868
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 1467
BfaI CTAG 6 cut(s) 297, 425, 539, 1052, 1425, 1533
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 817
BisI GCNGC 6 cut(s) 94, 119, 858, 942, 1251, 1479
BlnI CCTAGG 1 cut(s) 538
BlsI GCNGC 6 cut(s) 95, 120, 859, 943, 1252, 1480
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 146, 868
Bme18I GGWCC 2 cut(s) 360, 1421
BmgT120I GGNCC 3 cut(s) 4, 360, 1421
BmiI GGNNCC 2 cut(s) 361, 1216
BmrFI CCNGG 2 cut(s) 146, 868
BmsI GCATC 6 cut(s) 869, 1115, 1235, 1272, 1516, 1538
BpiI GAAGAC 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 178, 372, 538, 866
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 640
Bse1I ACTGG 4 cut(s) 513, 1099, 1503, 1559
Bse3DI GCAATG 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 2 cut(s) 146, 868
BseDI CCNNGG 4 cut(s) 178, 372, 538, 866
BseGI GGATG 1 cut(s) 1083
BseLI CCNNNNNNNGG 2 cut(s) 272, 640
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 2 cut(s) 560, 833
BseNI ACTGG 4 cut(s) 513, 1099, 1503, 1559
BseRI GAGGAG 2 cut(s) 125, 164
BseXI GCAGC 5 cut(s) 130, 844, 928, 1262, 1465
BseYI CCCAGC 1 cut(s) 1639
Bsh1236I CGCG 1 cut(s) 1516
BshFI GGCC 3 cut(s) 5, 615, 849
BsiHKAI GWGCWC 1 cut(s) 818
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 272, 640
BsmAI GTCTC 1 cut(s) 1467
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 3 cut(s) 5, 615, 849
Bsp1286I GDGCHC 4 cut(s) 499, 575, 818, 1219
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 4 cut(s) 75, 386, 451, 675
Bsp19I CCATGG 1 cut(s) 178
Bsp68I TCGCGA 1 cut(s) 1516
BspACI CCGC 5 cut(s) 12, 42, 93, 276, 510
BspANI GGCC 3 cut(s) 5, 615, 849
BspCNI CTCAG 2 cut(s) 561, 832
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 1 cut(s) 1516
BspHI TCATGA 1 cut(s) 1182
BspLI GGNNCC 2 cut(s) 361, 1216
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 2 cut(s) 394, 446
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 4 cut(s) 513, 1099, 1503, 1559
BssECI CCNNGG 4 cut(s) 178, 372, 538, 866
BssMI GATC 4 cut(s) 75, 386, 451, 675
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 178, 538
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 146, 868
Bst4CI ACNGT 8 cut(s) 160, 169, 241, 842, 1325, 1418, 1450, 1544
BstAPI GCANNNNNTGC 1 cut(s) 938
BstC8I GCNNGC 3 cut(s) 814, 1049, 1508
BstDEI CTNAG 2 cut(s) 569, 819
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 1083
BstFNI CGCG 1 cut(s) 1516
BstKTI GATC 4 cut(s) 78, 389, 454, 678
BstMAI GTCTC 1 cut(s) 1467
BstMBI GATC 4 cut(s) 75, 386, 451, 675
BstMWI GCNNNNNNNGC 6 cut(s) 18, 540, 923, 938, 1223, 1487
BstNI CCWGG 2 cut(s) 146, 868
BstSCI CCNGG 2 cut(s) 144, 866
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 1516
BstV1I GCAGC 5 cut(s) 130, 844, 928, 1262, 1465
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 2 cut(s) 14, 894
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 3 cut(s) 5, 615, 849
BtgI CCRYGG 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 1083
BtsIMutI CAGTG 4 cut(s) 834, 1423, 1455, 1549
BtuMI TCGCGA 1 cut(s) 1516
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 3 cut(s) 814, 1049, 1508
CciI TCATGA 1 cut(s) 1182
Cfr13I GGNCC 3 cut(s) 4, 360, 1421
Csp6I GTAC 7 cut(s) 54, 156, 305, 592, 975, 1016, 1376
CviAII CATG 7 cut(s) 179, 313, 1183, 1237, 1363, 1459, 1617
CviQI GTAC 7 cut(s) 54, 156, 305, 592, 975, 1016, 1376
DdeI CTNAG 2 cut(s) 569, 819
DpnI GATC 4 cut(s) 77, 388, 453, 677
DpnII GATC 4 cut(s) 75, 386, 451, 675
DrdI GACNNNNNNGTC 1 cut(s) 1459
DseDI GACNNNNNNGTC 1 cut(s) 1459
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 178, 538
Eco24I GRGCYC 3 cut(s) 499, 575, 1219
Eco47I GGWCC 2 cut(s) 360, 1421
Eco57I CTGAAG 2 cut(s) 210, 1372
EcoRII CCWGG 2 cut(s) 144, 866
EcoT14I CCWWGG 2 cut(s) 178, 538
EcoT22I ATGCAT 2 cut(s) 1531, 1612
EcoT38I GRGCYC 3 cut(s) 499, 575, 1219
ErhI CCWWGG 2 cut(s) 178, 538
FaeI CATG 7 cut(s) 182, 316, 1186, 1240, 1366, 1462, 1620
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 1 cut(s) 373
FatI CATG 7 cut(s) 178, 312, 1182, 1236, 1362, 1458, 1616
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 6 cut(s) 94, 119, 858, 942, 1251, 1479
FokI GGATG 1 cut(s) 1090
FriOI GRGCYC 3 cut(s) 499, 575, 1219
Fsp4HI GCNGC 6 cut(s) 94, 119, 858, 942, 1251, 1479
FspBI CTAG 6 cut(s) 297, 425, 539, 1052, 1425, 1533
GluI GCNGC 6 cut(s) 94, 119, 858, 942, 1251, 1479
GsaI CCCAGC 1 cut(s) 1643
HaeIII GGCC 3 cut(s) 5, 615, 849
HapII CCGG 1 cut(s) 668
Hin1II CATG 7 cut(s) 182, 316, 1186, 1240, 1366, 1462, 1620
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 924, 1631
HinfI GANTC 2 cut(s) 247, 965
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 1 cut(s) 668
HphI GGTGA 2 cut(s) 95, 499
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 8 cut(s) 522, 570, 822, 1071, 1331, 1391, 1494, 1585
Hpy188III TCNNGA 8 cut(s) 188, 244, 458, 668, 1183, 1515, 1533, 1625
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 4 cut(s) 286, 860, 1032, 1465
HpyCH4III ACNGT 8 cut(s) 160, 169, 241, 842, 1325, 1418, 1450, 1544
HpyCH4IV ACGT 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 540, 923, 938, 1223, 1487
HpyF3I CTNAG 2 cut(s) 569, 819
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 7 cut(s) 182, 316, 1186, 1240, 1366, 1462, 1620
Kpn2I TCCGGA 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 75, 386, 451, 675
LmnI GCTCC 1 cut(s) 1214
Lsp1109I GCAGC 5 cut(s) 130, 844, 928, 1262, 1465
LweI GCATC 6 cut(s) 869, 1115, 1235, 1272, 1516, 1538
MaeI CTAG 6 cut(s) 297, 425, 539, 1052, 1425, 1533
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 6 cut(s) 140, 505, 736, 1313, 1444, 1450
MalI GATC 4 cut(s) 77, 388, 453, 677
MboI GATC 4 cut(s) 75, 386, 451, 675
MboII GAAGA 3 cut(s) 656, 1183, 1351
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 4 cut(s) 499, 575, 818, 1219
MluCI AATT 8 cut(s) 258, 501, 753, 1167, 1307, 1337, 1368, 1565
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 3 cut(s) 730, 1039, 1126
Mph1103I ATGCAT 2 cut(s) 1531, 1612
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 1325
MseI TTAA 4 cut(s) 164, 224, 912, 1434
MslI CAYNNNNRTG 3 cut(s) 821, 892, 1615
MspA1I CMGCKG 1 cut(s) 1175
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 2 cut(s) 146, 868
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 2 cut(s) 146, 868
MvnI CGCG 1 cut(s) 1516
MwoI GCNNNNNNNGC 6 cut(s) 18, 540, 923, 938, 1223, 1487
NcoI CCATGG 1 cut(s) 178
NdeII GATC 4 cut(s) 75, 386, 451, 675
NlaIII CATG 7 cut(s) 182, 316, 1186, 1240, 1366, 1462, 1620
NlaIV GGNNCC 2 cut(s) 361, 1216
NmuCI GTSAC 4 cut(s) 505, 736, 1444, 1450
NruI TCGCGA 1 cut(s) 1516
NsiI ATGCAT 2 cut(s) 1531, 1612
PagI TCATGA 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 1325
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 6 cut(s) 95, 120, 859, 943, 1252, 1480
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
PsiI TTATAA 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 144, 866
PspFI CCCAGC 1 cut(s) 1639
PspGI CCWGG 2 cut(s) 144, 866
PspN4I GGNNCC 2 cut(s) 361, 1216
PspPI GGNCC 3 cut(s) 4, 360, 1421
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 1175
RruI TCGCGA 1 cut(s) 1516
RsaI GTAC 7 cut(s) 55, 157, 306, 593, 976, 1017, 1377
RsaNI GTAC 7 cut(s) 54, 156, 305, 592, 975, 1016, 1376
RseI CAYNNNNRTG 3 cut(s) 821, 892, 1615
SaqAI TTAA 4 cut(s) 164, 224, 912, 1434
SatI GCNGC 6 cut(s) 94, 119, 858, 942, 1251, 1479
Sau3AI GATC 4 cut(s) 75, 386, 451, 675
Sau96I GGNCC 3 cut(s) 4, 360, 1421
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 2 cut(s) 146, 868
SduI GDGCHC 4 cut(s) 499, 575, 818, 1219
SfaNI GCATC 6 cut(s) 869, 1115, 1235, 1272, 1516, 1538
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 360, 1421
SmiMI CAYNNNNRTG 3 cut(s) 821, 892, 1615
SmlI CTYRAG 1 cut(s) 784
SmoI CTYRAG 1 cut(s) 784
Sse9I AATT 8 cut(s) 258, 501, 753, 1167, 1307, 1337, 1368, 1565
SsiI CCGC 5 cut(s) 12, 42, 93, 276, 510
SspMI CTAG 6 cut(s) 297, 425, 539, 1052, 1425, 1533
StyD4I CCNGG 2 cut(s) 144, 866
StyI CCWWGG 2 cut(s) 178, 538
TaaI ACNGT 8 cut(s) 160, 169, 241, 842, 1325, 1418, 1450, 1544
TaiI ACGT 1 cut(s) 743
TaqI TCGA 1 cut(s) 108
TasI AATT 8 cut(s) 258, 501, 753, 1167, 1307, 1337, 1368, 1565
TatI WGTACW 3 cut(s) 53, 155, 304
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 4 cut(s) 164, 224, 912, 1434
Tru9I TTAA 4 cut(s) 164, 224, 912, 1434
TscAI CASTG 4 cut(s) 841, 1423, 1455, 1549
TseFI GTSAC 4 cut(s) 505, 736, 1444, 1450
TseI GCWGC 5 cut(s) 118, 857, 941, 1250, 1478
Tsp45I GTSAC 4 cut(s) 505, 736, 1444, 1450
TspDTI ATGAA 4 cut(s) 1171, 1272, 1351, 1447
TspRI CASTG 4 cut(s) 841, 1423, 1455, 1549
VpaK11BI GGWCC 2 cut(s) 360, 1421
XapI RAATTY 4 cut(s) 1167, 1337, 1368, 1565
XbaI TCTAGA 1 cut(s) 1532
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 1172
XmaJI CCTAGG 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 1325
XspI CTAG 6 cut(s) 297, 425, 539, 1052, 1425, 1533
ZrmI AGTACT 1 cut(s) 157
Zsp2I ATGCAT 2 cut(s) 1531, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.