Rh6CG502700

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011640
Physical Location & Seq
Forward (+)
66525539 .. 66528368
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG502700.1

Sequence Viewer

Length: 1395 bp
ATGGGCGGAGGCGATGTTGAGAAGGCTAGGGTGGTACAAACCATGCTCTTTCTTTCAGGGTTGAACACACTCTTGCAATCTCTATTTGGGACCAGACTTCCCTCGGTGGTAGTGGGATCATATACTTATGTACTCCCCACAACTTCAATAATCCTAGCCAATAGATACAAGGCATTCACAGATCCTCATGAGAGGTTTTTACAAAGTATGAGAGGCATACAAGGGGCTCTAATTGTCACTGCCAGTTTTCAGATGATTGTGGGCTTCCTAGGCTTGTGGAGAAATGTTGTAAGGTTTCTGAGCCCTCTTTCTATTGTGCCGTACATAACCTTTGCTGGACTTGGCCTCTATCATCTTGGTTTCCCTATGTTGGCAAGATGTGTTGAACTTGGTCTTCCAGAGTTGATCATCGTGGTATTCATCTCACAGTATCTTTCTCGTTTTATAAATACAAAGTGGCAGATATTTGACAGATTTGCAGTCACGTTCTCTGTTGGAATTGTGTGGTTATTTGCCCAACTTCTTACCTCAAGTGGTGTTTATGACAACAAACCTGCGAGCACTCAGATGAGTTGTCGCACTGACCGTTCTGGCCTTCTCGCTGCATCTCCCTGGATATATATTCCATATCCATTTCAATGGGGAAGCCCCACTTTTAATGCAGGAGAAGCTTTTGCAATGGTTGCTGCCTCTTTAGTTTCTCTCATAGAGTCGTCTGGTACATTTTATGCTACAGCAAGATATGGGAGTGCAACACCTGTACCCCCTTCTGTCGTTAGTCGGGGTGTTGGCTGGCTAGGTGTTGGAGTTTTTCTGAATGGGATGTTTGGTTCTCTAACTGGCACTACTGCATCAGTTGAAAATGCTGGTCTATTGGCATTGACAAGAGTTGGAAGCCGTAGAGTTATCCAAATTTCAGCTGGTTTCATGATATTCTTCTCTATATTTGGAAAATGTGGAGCCCTTTTTGCATCTATTCCCATGCCAATCATAGCAGCTCTTTACTGCATCTTATTTGGCTATGTTTCATCTGCTGGTCTTGGTTTTCTACAGTTCTGTAACTTGAACAGTTTCAGAACAAAATTTATATTGGGGTTCTCTTTCTTCATGGGAATTTCAGTACCACAATACTTCAGAGAATATAGGTTGGGGCATATTCACTGTGGTCCTAGATGGTTTAATGATGTAGTGACAGTGACCTTCATGTCTCACACATTAGTAGCTGCTCTGGTTGCTCTGATACTGGACTGCTCGCTTTCGCGAGAAAATGATGCATCTAGAAAAGACAGTGGCTTGAACTGGTGGGCGAAATTTGGGGTATATGGTTCTGATGTTAGGAATGATGAGTTCTATGCATTACCATGCAGTCTGGACAAGCTTTTCCCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

464

Amino Acids

50.96

Weight (kDa)

9.32

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 5 - 378 8.2e-53 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65550 AT5G25420
fragaria_vesca FvH4_2g32910
malus_domestica MD04G1056000.v1.1 MD15G1067600.v1.1
prunus_persica Prupe.1G421500_v2.0.a1
pyrus_communis pycom04g04930
rosa_chinensis RchiOBHm_Chr6g0309811
rosa_laevigata RLG00000010534
rosa_multiflora Rmu_co8452475.1_g000001 Rmu_sc0011006.1_g000001 Rmu_ssc0000373.1_g000005
rosa_roxburghii Rroxscaffold_7G00159160
rosa_rugosa Rorug06G0375000
rosa_samantha Rh6AG488300 Rh6BG497900 Rh6CG502700 Rh6DG488800
rosa_wichuraiana Rw6G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AasI GACNNNNNNGTC 1 cut(s) 1204
Acc36I ACCTGC 1 cut(s) 562
AccII CGCG 1 cut(s) 1261
AciI CCGC 1 cut(s) 6
AclWI GGATC 2 cut(s) 124, 176
AcsI RAATTY 4 cut(s) 912, 1082, 1113, 1310
AcuI CTGAAG 1 cut(s) 1117
AfaI GTAC 6 cut(s) 36, 132, 323, 721, 762, 1122
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 7 cut(s) 64, 147, 386, 638, 860, 1066, 1297
AjnI CCWGG 1 cut(s) 611
AloI GAACNNNNNNTCC 2 cut(s) 814, 846
AluBI AGCT 6 cut(s) 671, 920, 998, 1223, 1378, 1388
AluI AGCT 6 cut(s) 671, 920, 998, 1223, 1378, 1388
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 1212
AlwI GGATC 2 cut(s) 124, 176
AoxI GGCC 2 cut(s) 343, 592
ApeKI GCWGC 4 cut(s) 602, 686, 995, 1223
ApoI RAATTY 4 cut(s) 912, 1082, 1113, 1310
Asp700I GAANNNNTTC 1 cut(s) 1070
AspA2I CCTAGG 1 cut(s) 268
AspS9I GGNCC 2 cut(s) 90, 1166
AvaII GGWCC 2 cut(s) 90, 1166
AvrII CCTAGG 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BanII GRGCYC 3 cut(s) 229, 305, 964
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 4 cut(s) 589, 673, 1007, 1210
BccI CCATC 1 cut(s) 1167
BceAI ACGGC 2 cut(s) 304, 882
BciT130I CCWGG 1 cut(s) 613
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 1212
BfaI CTAG 6 cut(s) 27, 155, 269, 797, 1170, 1278
BfmI CTRYAG 2 cut(s) 732, 1049
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 4 cut(s) 603, 687, 996, 1224
BlnI CCTAGG 1 cut(s) 268
BlsI GCNGC 4 cut(s) 604, 688, 997, 1225
Bme1390I CCNGG 1 cut(s) 613
Bme18I GGWCC 2 cut(s) 90, 1166
BmgT120I GGNCC 2 cut(s) 90, 1166
BmiI GGNNCC 2 cut(s) 91, 961
BmrFI CCNGG 1 cut(s) 613
BmsI GCATC 6 cut(s) 614, 860, 980, 1017, 1261, 1283
BpiI GAAGAC 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 514
BsaJI CCNNGG 3 cut(s) 102, 268, 611
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 4 cut(s) 243, 844, 1248, 1304
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 1 cut(s) 613
BseDI CCNNGG 3 cut(s) 102, 268, 611
BseGI GGATG 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 2 cut(s) 290, 578
BseNI ACTGG 4 cut(s) 243, 844, 1248, 1304
BseXI GCAGC 4 cut(s) 589, 673, 1007, 1210
BseYI CCCAGC 1 cut(s) 1384
Bsh1236I CGCG 1 cut(s) 1261
BshFI GGCC 2 cut(s) 345, 594
BsiHKAI GWGCWC 1 cut(s) 563
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 1212
BsmFI GGGAC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 2 cut(s) 345, 594
Bsp1286I GDGCHC 4 cut(s) 229, 305, 563, 964
Bsp143I GATC 3 cut(s) 116, 181, 405
Bsp68I TCGCGA 1 cut(s) 1261
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 345, 594
BspCNI CTCAG 2 cut(s) 291, 577
BspFNI CGCG 1 cut(s) 1261
BspHI TCATGA 2 cut(s) 187, 927
BspLI GGNNCC 2 cut(s) 91, 961
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 2 cut(s) 124, 176
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 4 cut(s) 243, 844, 1248, 1304
BssECI CCNNGG 3 cut(s) 102, 268, 611
BssMI GATC 3 cut(s) 116, 181, 405
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 7 cut(s) 429, 587, 1053, 1070, 1163, 1195, 1289
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 3 cut(s) 559, 794, 1253
BstDEI CTNAG 2 cut(s) 299, 564
BstF5I GGATG 1 cut(s) 828
BstFNI CGCG 1 cut(s) 1261
BstKTI GATC 3 cut(s) 119, 184, 408
BstMAI GTCTC 1 cut(s) 1212
BstMBI GATC 3 cut(s) 116, 181, 405
BstMWI GCNNNNNNNGC 5 cut(s) 270, 668, 683, 968, 1232
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 2 cut(s) 732, 1049
BstUI CGCG 1 cut(s) 1261
BstV1I GCAGC 4 cut(s) 589, 673, 1007, 1210
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 639
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 345, 594
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 828
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 5 cut(s) 237, 579, 1159, 1200, 1294
BtuMI TCGCGA 1 cut(s) 1261
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 3 cut(s) 559, 794, 1253
CciI TCATGA 2 cut(s) 187, 927
Cfr13I GGNCC 2 cut(s) 90, 1166
Csp6I GTAC 6 cut(s) 35, 131, 322, 720, 761, 1121
CviAII CATG 7 cut(s) 43, 188, 928, 982, 1108, 1204, 1362
CviQI GTAC 6 cut(s) 35, 131, 322, 720, 761, 1121
DdeI CTNAG 2 cut(s) 299, 564
DpnI GATC 3 cut(s) 118, 183, 407
DpnII GATC 3 cut(s) 116, 181, 405
DrdI GACNNNNNNGTC 1 cut(s) 1204
DseDI GACNNNNNNGTC 1 cut(s) 1204
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 3 cut(s) 229, 305, 964
Eco47I GGWCC 2 cut(s) 90, 1166
Eco57I CTGAAG 1 cut(s) 1117
EcoRII CCWGG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 268
EcoT22I ATGCAT 2 cut(s) 1276, 1357
EcoT38I GRGCYC 3 cut(s) 229, 305, 964
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 7 cut(s) 46, 191, 931, 985, 1111, 1207, 1365
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 1 cut(s) 103
FatI CATG 7 cut(s) 42, 187, 927, 981, 1107, 1203, 1361
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 603, 687, 996, 1224
FokI GGATG 1 cut(s) 835
FriOI GRGCYC 3 cut(s) 229, 305, 964
Fsp4HI GCNGC 4 cut(s) 603, 687, 996, 1224
FspBI CTAG 6 cut(s) 27, 155, 269, 797, 1170, 1278
GluI GCNGC 4 cut(s) 603, 687, 996, 1224
GsaI CCCAGC 1 cut(s) 1388
HaeIII GGCC 2 cut(s) 345, 594
Hin1II CATG 7 cut(s) 46, 191, 931, 985, 1111, 1207, 1365
HindIII AAGCTT 2 cut(s) 669, 1376
HinfI GANTC 1 cut(s) 710
Hpy188I TCNGA 8 cut(s) 252, 300, 567, 816, 1076, 1136, 1239, 1330
Hpy188III TCNNGA 6 cut(s) 188, 398, 928, 1260, 1278, 1370
HpyAV CCTTC 4 cut(s) 16, 605, 777, 1210
HpyCH4III ACNGT 7 cut(s) 429, 587, 1053, 1070, 1163, 1195, 1289
HpyCH4IV ACGT 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 5 cut(s) 270, 668, 683, 968, 1232
HpyF3I CTNAG 2 cut(s) 299, 564
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 7 cut(s) 46, 191, 931, 985, 1111, 1207, 1365
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 3 cut(s) 116, 181, 405
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 4 cut(s) 589, 673, 1007, 1210
LweI GCATC 6 cut(s) 614, 860, 980, 1017, 1261, 1283
MaeI CTAG 6 cut(s) 27, 155, 269, 797, 1170, 1278
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 5 cut(s) 235, 481, 1058, 1189, 1195
MalI GATC 3 cut(s) 118, 183, 407
MboI GATC 3 cut(s) 116, 181, 405
MboII GAAGA 3 cut(s) 386, 928, 1096
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 229, 305, 563, 964
MluCI AATT 6 cut(s) 231, 498, 912, 1082, 1113, 1310
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 3 cut(s) 475, 784, 871
MnlI CCTC 8 cut(s) 112, 186, 195, 206, 315, 356, 538, 700
Mph1103I ATGCAT 2 cut(s) 1276, 1357
MroXI GAANNNNTTC 1 cut(s) 1070
MseI TTAA 2 cut(s) 657, 1179
MslI CAYNNNNRTG 3 cut(s) 566, 637, 1360
MspA1I CMGCKG 1 cut(s) 920
MspR9I CCNGG 1 cut(s) 613
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 613
MvnI CGCG 1 cut(s) 1261
MwoI GCNNNNNNNGC 5 cut(s) 270, 668, 683, 968, 1232
NdeII GATC 3 cut(s) 116, 181, 405
NlaIII CATG 7 cut(s) 46, 191, 931, 985, 1111, 1207, 1365
NlaIV GGNNCC 2 cut(s) 91, 961
NmuCI GTSAC 4 cut(s) 235, 481, 1189, 1195
NruI TCGCGA 1 cut(s) 1261
NsiI ATGCAT 2 cut(s) 1276, 1357
PagI TCATGA 2 cut(s) 187, 927
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 1070
PkrI GCNGC 4 cut(s) 604, 688, 997, 1225
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 1384
PspGI CCWGG 1 cut(s) 611
PspN4I GGNNCC 2 cut(s) 91, 961
PspPI GGNCC 2 cut(s) 90, 1166
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 920
RruI TCGCGA 1 cut(s) 1261
RsaI GTAC 6 cut(s) 36, 132, 323, 721, 762, 1122
RsaNI GTAC 6 cut(s) 35, 131, 322, 720, 761, 1121
RseI CAYNNNNRTG 3 cut(s) 566, 637, 1360
SaqAI TTAA 2 cut(s) 657, 1179
SatI GCNGC 4 cut(s) 603, 687, 996, 1224
Sau3AI GATC 3 cut(s) 116, 181, 405
Sau96I GGNCC 2 cut(s) 90, 1166
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 613
SduI GDGCHC 4 cut(s) 229, 305, 563, 964
SfaNI GCATC 6 cut(s) 614, 860, 980, 1017, 1261, 1283
SfcI CTRYAG 2 cut(s) 732, 1049
SinI GGWCC 2 cut(s) 90, 1166
SmiMI CAYNNNNRTG 3 cut(s) 566, 637, 1360
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 6 cut(s) 231, 498, 912, 1082, 1113, 1310
SsiI CCGC 1 cut(s) 6
SspMI CTAG 6 cut(s) 27, 155, 269, 797, 1170, 1278
StyD4I CCNGG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 7 cut(s) 429, 587, 1053, 1070, 1163, 1195, 1289
TaiI ACGT 1 cut(s) 488
TasI AATT 6 cut(s) 231, 498, 912, 1082, 1113, 1310
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 2 cut(s) 657, 1179
Tru9I TTAA 2 cut(s) 657, 1179
TscAI CASTG 5 cut(s) 244, 586, 1166, 1200, 1294
TseFI GTSAC 4 cut(s) 235, 481, 1189, 1195
TseI GCWGC 4 cut(s) 602, 686, 995, 1223
Tsp45I GTSAC 4 cut(s) 235, 481, 1189, 1195
TspDTI ATGAA 5 cut(s) 409, 916, 1017, 1096, 1192
TspRI CASTG 5 cut(s) 244, 586, 1166, 1200, 1294
VpaK11BI GGWCC 2 cut(s) 90, 1166
XapI RAATTY 4 cut(s) 912, 1082, 1113, 1310
XbaI TCTAGA 1 cut(s) 1277
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XmaJI CCTAGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 1070
XspI CTAG 6 cut(s) 27, 155, 269, 797, 1170, 1278
Zsp2I ATGCAT 2 cut(s) 1276, 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.