Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011738

Physical Location & Seq

Genomic Coordinates Forward (+)

24737719 .. 24739353

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66345.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGCGTCAGCTTTGCGCCGCTTAGTAGAACAACAACAATGGCGTTACTTAGTTTCTCAATCAACCCGATCTCCAAAACTCATCCATGGCTTCTTCTCCTTCTCCTCCAAAACTAATCCAAATCCAAACAAACAACAACAAATCCTCATCGACTACATCTCCAAATCCCTCCAATCCAACGATACCTGGGAAACTCTCTCCACCAAATTCTCCTCCATAGATCTATCAGATTCCTTAATCGAAACAATCCTTCTCCGATTCAAAAACCCCGAAACCGCCAAACAAGCTTTATCCTTCTTCCATTGGTCATCCCACACTCGAAATCTCCGTCACGGAATCAAATCTTACGCATTGACGATTCATATCCTTGTCAAAGCTCGATTACTAATCGACGCTCGAGCTTTAATTGAATCGTCTCTGTTAAATTCTCCTCCCGATTCGGATTTAGTCGATTCGTTGTTAGATACTTATGAGATCTCATCTTCTACTCCTTTAGTGTTTGATTTGTTAGTTCAATGTTACGCTAAGATTAGGTATTTGGAATTAGGGTTTGATGTGTTCAAGAGATTGTGTGATTGTGGATTTACTCTTAGTGTGATTACTTTAAACACGTTGATTCATTACTCTTCGAAATCGAAGATTGATGATCTTGTGTGGAGGATTTACGAATGTGCGATTGATAAAAGGATTTATCCGAACGAGATTACGATTCGGATAATGATTCAAGTGTTGTGTAAAGAAGGGAGATTGAAAGAAGTTGTTGATTTGTTAGATAGGATTTGTGGTAAGAGATGTTTACCTTCAGTGATTGTGAATACGAGTTTAGTGTTTAGGGTTTTGGAAGAGATGAGAATAGAGGAGAGTATGAGTTTGTTGAAGAGATTGTTGATGAAGAATATGGTTGTTGATACTATTGGTTATTCGATTGTTGTTTATGCGAAAGCTAAGGAAGGTGATTTGGTGTCTGCACGGAAGGTGTTTGATGAAATGCTTCAACGAGGTTTTAGTGCGAATTCGTTTGTTTATACGGTGTTTGTTAGAGTTTGTTGTGAAAAGGGTGATGTTAAAGAAGCGGAGAGGTTGTTGAGTGAGATGGAGGAGTCTGGAGTCAGTCCGTATGACGAGACGTTTAATTGTCTTATCGGTGGTTTCGCGAGGTTCGGGTGGGAAGAGAAAGGTTTGGAGTATTGTGAGGTAATGGTAACGAGAGGGCTTATGCCTAGTTGTTCGGCTTTCAATGAGATGGTTAAGAGTGTAAGTAAGATTGAGAACGTGAATCGCGCAAATGAAATCTTAACAAAGTCGATAGATAAAGGGTTTGTGCCCGATGAACATACGTACTCTCATCTGATTCGAGGGTTTATAGAAGGAAACGATATCGATCAAGCGCTTAAGCTGTTCTACGAGATGGAATACCGAAAGATGTCTCCTGGTTTCGAGGTGTTTAGGTCACTAATTGTGGGACTCTGCACTTGTGGTAAAGTGGAAGCCGGAGAAAAGTACTTGAAAATTATGAAGAAGAGGTTGATAGAGCCTAATGCAGATATATATGACGCATTGATTAAGGCATTTCAGAAAATTGGTGATAAAACAAATGCTGATAGAGTTTATAATGAGATGATTTCAGTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

544

Amino Acids

62.33

Weight (kDa)

7.82

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	303 - 350	1.1e-07	PPR repeat family
PPR_long	PF17177	307 - 433	5.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	325 - 384	4.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	333 - 366	2.5e-06	PPR repeat
PPR_2	PF13041	338 - 386	2e-10	PPR repeat family
PPR	PF01535	341 - 370	4.7e-06	PPR repeat
PPR_long	PF17177	419 - 540	7.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	442 - 490	4.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66345
fragaria_vesca	FvH4_5g33100 FvH4_5g33100
prunus_persica	Prupe.4G237400_v2.0.a1
pyrus_communis	pycom11g17530
rosa_chinensis	RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291
rosa_laevigata	RLG00000001422
rosa_multiflora	Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005
rosa_rugosa	Rorug07G0266200
rosa_samantha	Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000
rosa_wichuraiana	Rw7G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1611
AccII	CGCG	2 cut(s)	1154, 1281
AciI	CCGC	3 cut(s)	19, 276, 1073
AcsI	RAATTY	3 cut(s)	206, 424, 1012
AcuI	CTGAAG	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	1340, 1502
AfeI	AGCGCT	1 cut(s)	1389
AflII	CTTAAG	1 cut(s)	1391
AflIII	ACRYGT	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	185, 1429
AluBI	AGCT	6 cut(s)	11, 287, 377, 401, 944, 1396
AluI	AGCT	6 cut(s)	11, 287, 377, 401, 944, 1396
Alw26I	GTCTC	3 cut(s)	420, 1118, 1431
Ama87I	CYCGRG	1 cut(s)	396
Aor51HI	AGCGCT	1 cut(s)	1389
ApoI	RAATTY	3 cut(s)	206, 424, 1012
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
Asp700I	GAANNNNTTC	1 cut(s)	990
AspLEI	GCGC	3 cut(s)	18, 1283, 1390
AsuHPI	GGTGA	3 cut(s)	965, 1070, 1595
AsuII	TTCGAA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	1326
BccI	CCATC	3 cut(s)	1087, 1237, 1402
BciT130I	CCWGG	2 cut(s)	187, 1431
BcoDI	GTCTC	3 cut(s)	420, 1118, 1431
BfaI	CTAG	1 cut(s)	1221
BfoI	RGCGCY	1 cut(s)	1391
BfrI	CTTAAG	1 cut(s)	1391
BglII	AGATCT	2 cut(s)	220, 474
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	1502
Bme1390I	CCNGG	2 cut(s)	187, 1431
BmeT110I	CYCGRG	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	187, 1431
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	1380
BsaAI	YACGTR	1 cut(s)	1338
BsaBI	GATNNNNATC	2 cut(s)	362, 1380
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	85, 186
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 143, 173, 1067, 1097
Bse8I	GATNNNNATC	2 cut(s)	362, 1380
BseBI	CCWGG	2 cut(s)	187, 1431
BseCI	ATCGAT	1 cut(s)	1380
BseDI	CCNNGG	2 cut(s)	85, 186
BseGI	GGATG	2 cut(s)	81, 308
BseJI	GATNNNNATC	2 cut(s)	362, 1380
BseRI	GAGGAG	5 cut(s)	94, 202, 420, 872, 1112
BseSI	GKGCMC	1 cut(s)	1326
BsgI	GTGCAG	2 cut(s)	951, 1453
Bsh1236I	CGCG	2 cut(s)	1154, 1281
BshVI	ATCGAT	1 cut(s)	1380
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	1491
BslFI	GGGAC	1 cut(s)	1476
BsmAI	GTCTC	3 cut(s)	420, 1118, 1431
BsmBI	CGTCTC	2 cut(s)	420, 1118
BsmFI	GGGAC	1 cut(s)	1476
BsoBI	CYCGRG	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	1326
Bsp143I	GATC	5 cut(s)	68, 220, 474, 646, 1381
Bsp19I	CCATGG	1 cut(s)	85
Bsp68I	TCGCGA	1 cut(s)	1154
BspACI	CCGC	3 cut(s)	19, 276, 1073
BspDI	ATCGAT	1 cut(s)	1380
BspFNI	CGCG	2 cut(s)	1154, 1281
BspT104I	TTCGAA	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	1391
BssECI	CCNNGG	2 cut(s)	85, 186
BssMI	GATC	5 cut(s)	68, 220, 474, 646, 1381
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	187, 1431
Bst4CI	ACNGT	1 cut(s)	1030
Bst6I	CTCTTC	5 cut(s)	631, 837, 872, 1164, 1514
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1391
BstBAI	YACGTR	1 cut(s)	1338
BstBI	TTCGAA	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	22, 49, 525, 590, 945
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	81, 308
BstFNI	CGCG	2 cut(s)	1154, 1281
BstH2I	RGCGCY	1 cut(s)	1391
BstHHI	GCGC	3 cut(s)	18, 1283, 1390
BstKTI	GATC	5 cut(s)	71, 223, 477, 649, 1384
BstMAI	GTCTC	3 cut(s)	420, 1118, 1431
BstMBI	GATC	5 cut(s)	68, 220, 474, 646, 1381
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	187, 1431
BstSCI	CCNGG	2 cut(s)	185, 1429
BstSLI	GKGCMC	1 cut(s)	1326
BstSNI	TACGTA	1 cut(s)	1338
BstUI	CGCG	2 cut(s)	1154, 1281
BstX2I	RGATCY	2 cut(s)	220, 474
BstYI	RGATCY	2 cut(s)	220, 474
Bsu15I	ATCGAT	1 cut(s)	1380
BsuTUI	ATCGAT	1 cut(s)	1380
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	81, 308
BtsIMutI	CAGTG	1 cut(s)	810
BtuMI	TCGCGA	1 cut(s)	1154
CfoI	GCGC	3 cut(s)	18, 1283, 1390
ClaI	ATCGAT	1 cut(s)	1380
CseI	GACGC	2 cut(s)	401, 1562
Csp6I	GTAC	2 cut(s)	1339, 1501
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	2 cut(s)	1339, 1501
DdeI	CTNAG	5 cut(s)	22, 49, 525, 590, 945
DpnI	GATC	5 cut(s)	70, 222, 476, 648, 1383
DpnII	GATC	5 cut(s)	68, 220, 474, 646, 1381
DraI	TTTAAA	1 cut(s)	606
Eam1104I	CTCTTC	5 cut(s)	631, 837, 872, 1164, 1514
EarI	CTCTTC	5 cut(s)	631, 837, 872, 1164, 1514
Eco105I	TACGTA	1 cut(s)	1338
Eco130I	CCWWGG	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	1378
Eco47III	AGCGCT	1 cut(s)	1389
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	2 cut(s)	185, 1429
EcoRV	GATATC	1 cut(s)	1378
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	2 cut(s)	420, 1118
FaeI	CATG	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	1476
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	68, 295
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	1221
GlaI	GCGC	3 cut(s)	17, 1282, 1389
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	1125
HaeII	RGCGCY	1 cut(s)	1391
HapII	CCGG	1 cut(s)	1491
HgaI	GACGC	2 cut(s)	401, 1562
HhaI	GCGC	3 cut(s)	18, 1283, 1390
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	3 cut(s)	16, 1281, 1388
HinP1I	GCGC	3 cut(s)	16, 1281, 1388
HindIII	AAGCTT	1 cut(s)	285
HpaII	CCGG	1 cut(s)	1491
HphI	GGTGA	3 cut(s)	965, 1070, 1595
Hpy166II	GTNNAC	1 cut(s)	797
Hpy188I	TCNGA	8 cut(s)	229, 257, 442, 696, 714, 1350, 1575, 1631
Hpy188III	TCNNGA	4 cut(s)	434, 562, 1104, 1153
Hpy8I	GTNNAC	1 cut(s)	797
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	8 cut(s)	109, 260, 304, 734, 810, 944, 967, 1361
HpyCH4III	ACNGT	1 cut(s)	1030
HpyCH4IV	ACGT	4 cut(s)	611, 1127, 1272, 1337
HpyCH4V	TGCA	3 cut(s)	968, 1470, 1541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	5 cut(s)	22, 49, 525, 590, 945
HpySE526I	ACGT	4 cut(s)	611, 1127, 1272, 1337
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	3 cut(s)	16, 1281, 1388
Kzo9I	GATC	5 cut(s)	68, 220, 474, 646, 1381
LpnPI	CCDG	6 cut(s)	172, 199, 1089, 1416, 1443, 1504
MaeI	CTAG	1 cut(s)	1221
MaeII	ACGT	4 cut(s)	611, 1127, 1272, 1337
MaeIII	GTNAC	5 cut(s)	44, 329, 518, 1201, 1449
MalI	GATC	5 cut(s)	70, 222, 476, 648, 1383
MboI	GATC	5 cut(s)	68, 220, 474, 646, 1381
MflI	RGATCY	2 cut(s)	220, 474
MhlI	GDGCHC	1 cut(s)	1326
MluCI	AATT	9 cut(s)	206, 405, 424, 542, 1012, 1132, 1455, 1509, 1578
MlyI	GAGTC	3 cut(s)	1109, 1116, 1458
MmeI	TCCRAC	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	990
MspCI	CTTAAG	1 cut(s)	1391
MspI	CCGG	1 cut(s)	1491
MspR9I	CCNGG	2 cut(s)	187, 1431
MvaI	CCWGG	2 cut(s)	187, 1431
MvnI	CGCG	2 cut(s)	1154, 1281
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	5 cut(s)	68, 220, 474, 646, 1381
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	329, 1449
NruI	TCGCGA	1 cut(s)	1154
NspV	TTCGAA	1 cut(s)	629
PaeR7I	CTCGAG	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	990
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	3 cut(s)	1108, 1115, 1458
PpsI	GAGTC	3 cut(s)	1108, 1115, 1458
Ppu21I	YACGTR	1 cut(s)	1338
PsiI	TTATAA	1 cut(s)	1611
Psp6I	CCWGG	2 cut(s)	185, 1429
PspGI	CCWGG	2 cut(s)	185, 1429
PspXI	VCTCGAGB	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	220, 474
RruI	TCGCGA	1 cut(s)	1154
RsaI	GTAC	2 cut(s)	1340, 1502
RsaNI	GTAC	2 cut(s)	1339, 1501
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	5 cut(s)	68, 220, 474, 646, 1381
ScaI	AGTACT	1 cut(s)	1502
SchI	GAGTC	3 cut(s)	1109, 1116, 1458
ScrFI	CCNGG	2 cut(s)	187, 1431
SduI	GDGCHC	1 cut(s)	1326
Sfr274I	CTCGAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	396, 1391
SmoI	CTYRAG	2 cut(s)	396, 1391
SnaBI	TACGTA	1 cut(s)	1338
Sse9I	AATT	9 cut(s)	206, 405, 424, 542, 1012, 1132, 1455, 1509, 1578
SsiI	CCGC	3 cut(s)	19, 276, 1073
SspMI	CTAG	1 cut(s)	1221
StyD4I	CCNGG	2 cut(s)	185, 1429
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	1030
TaiI	ACGT	4 cut(s)	614, 1130, 1275, 1340
TasI	AATT	9 cut(s)	206, 405, 424, 542, 1012, 1132, 1455, 1509, 1578
TatI	WGTACW	1 cut(s)	1500
TauI	GCSGC	1 cut(s)	21
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	2 cut(s)	329, 1449
Tsp45I	GTSAC	2 cut(s)	329, 1449
TspDTI	ATGAA	7 cut(s)	350, 608, 905, 999, 1302, 1344, 1529
TspGWI	ACGGA	4 cut(s)	317, 348, 985, 1104
TspRI	CASTG	1 cut(s)	810
Vha464I	CTTAAG	1 cut(s)	1391
XapI	RAATTY	3 cut(s)	206, 424, 1012
XhoI	CTCGAG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	990
XspI	CTAG	1 cut(s)	1221
ZrmI	AGTACT	1 cut(s)	1502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.