Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011738

Physical Location & Seq

Genomic Coordinates Reverse (-)

25126035 .. 25127710

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGTCTAGTCTGTGCAACTTTGACACATCATGGAAAAAGATTCACGCCTTATTGGTGTTGCAACACACAGAAGTAAAGGCTTCATTTGAGAAAAGTCTTATATTTGTCCGACATGACTTCATGAAGAATGAGTTTAAGGTAATAGTGGGTTTTGTATCACATGCTGCCCTAGATTATATTTTGGGAGAGTCTGAGAGAATCGATGTTATTGGAACTAATGAGAATGCATGTGGTTGTACTTTGAGAAAAACACATGGGTTGCCATGTGCACATGAGATGGCAATTTATAAGGAGAATGGCAGCCCTATTCCACTCGATTGTGTTCATCGTCATTGGAGGAAATTAGATTTGTTTCATTCCCCACAAAGTAATGACCCTATAGATATTCCATTGAAGTCACTAGAGGAAAGATTCATGACCTGGTTACATGAAAGGGACGATGACACCAAGAGACAGGTAAAGAGAAAGTTAGAGGAAATTATGAATCCAGGATGTACCCTGCTTACAGAACCACTAGCGAAGATCAACACAAAAGGACGTCCAACTAAAGAAGAAGCCTCTACTCGTCGTATGTTATCTTCTTTTGAGATTGCATTGTCAGGTCAAGATAGTCATTCACAAACACCAGGTGTCGGGAGCGTTATAATGAAAGCTGCATTGAAGAGACCAAATAGGAGACGACCAAAAGAGGCAAAAGGTAATATTCAATCAGCAAAATTAACTCCTGGAACTGCTAGTACTAGTGAGACAACCATGAAGACAAAGAAACGACCATCCAAAGTGGGAGAACATATCAGTCCTTCACTAATTCCCACGCAGTTGAATCTACGTCAACATGTCAATCCATCTGAATTGACACAGGAGTATAATGACTGGTTTCCTCAAGAAATGTGGCCATTTTTCTTAGGAGCCAATGATGTAAAGGATGATGGTAATTGTGGTTTTAGAGCTATAGCTGAGTTTATGGGATATGGTGAGAATAATTGGCGCCGTGTACGCAAGGAGTTGTTGCAAGAGTTTCATCGGAATAAGCATGCATATCGATTACTATTCCGATATGCTGAGCGACTGGAGGAGGTGGAGAGGAGATTAGATTATTTTAATGATTTTCCGCCTGAAGAACATTGGTTCTTAATACCAGATATGGGATACATTGTCGCAAATTGTTACAACGTTGTGCTGATGCATTTTGGTTTGCCTTTGATGTCTTGTTTTACCTTCTTACCAATGAATAGTATCCCACTTCCTATAGTTGATCGTCGTGAAATTTCAATTGGTTTTGTCAAAAGATGTCACTTTGTCCAGGTTCATTTGAGGCCATTGCATCCTATGCCACCTGTTATCAATTGTTGGTTTAAATACTCTCTACCTCGTGCAAATGGATGGTTAGCTCCCTATAGTGATCGTCTTCATAATGGCAGAGATATTTTTTGTCCAAATTATTCAGACAATGAAAAAGTTTATCATCTTGATAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

493

Amino Acids

57.16

Weight (kDa)

8.6

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66345
fragaria_vesca	FvH4_5g33100 FvH4_5g33100
prunus_persica	Prupe.4G237400_v2.0.a1
pyrus_communis	pycom11g17530
rosa_chinensis	RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291
rosa_laevigata	RLG00000001422
rosa_multiflora	Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005
rosa_rugosa	Rorug07G0266200
rosa_samantha	Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000
rosa_wichuraiana	Rw7G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	288, 644
AatII	GACGTC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	987
AciI	CCGC	1 cut(s)	1112
AclI	AACGTT	1 cut(s)	1173
AcoI	YGGCCR	1 cut(s)	893
AcsI	RAATTY	1 cut(s)	1266
AcuI	CTGAAG	1 cut(s)	1137
AcyI	GRCGYC	2 cut(s)	538, 988
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	4 cut(s)	238, 496, 739, 996
AfiI	CCNNNNNNNGG	2 cut(s)	632, 1145
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	5 cut(s)	394, 661, 707, 823, 1272
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	5 cut(s)	419, 487, 625, 724, 1302
AjuI	GAANNNNNNNTTGG	2 cut(s)	1257, 1289
AluBI	AGCT	4 cut(s)	653, 950, 956, 1391
AluI	AGCT	4 cut(s)	653, 950, 956, 1391
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	4 cut(s)	445, 658, 670, 740
Alw44I	GTGCAC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	893, 1316
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	164, 300, 653
ApoI	RAATTY	1 cut(s)	1266
AspLEI	GCGC	1 cut(s)	990
AsuHPI	GGTGA	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	987
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BauI	CACGAG	1 cut(s)	1371
BbsI	GAAGAC	2 cut(s)	764, 1400
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	151, 312, 640
BccI	CCATC	5 cut(s)	271, 781, 853, 923, 1377
BceAI	ACGGC	1 cut(s)	975
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	5 cut(s)	421, 489, 627, 726, 1304
BciVI	GTATCC	2 cut(s)	1142, 1247
BcoDI	GTCTC	4 cut(s)	445, 658, 670, 740
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	6 cut(s)	6, 170, 401, 515, 735, 741
BfmI	CTRYAG	4 cut(s)	378, 951, 1248, 1396
BfoI	RGCGCY	1 cut(s)	991
BfuI	GTATCC	2 cut(s)	1142, 1247
BisI	GCNGC	3 cut(s)	165, 301, 654
BlpI	GCTNAGC	1 cut(s)	1062
BlsI	GCNGC	3 cut(s)	166, 302, 655
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	5 cut(s)	421, 489, 627, 726, 1304
BmiI	GGNNCC	2 cut(s)	910, 989
BmrFI	CCNGG	5 cut(s)	421, 489, 627, 726, 1304
BmsI	GCATC	2 cut(s)	1173, 1333
BpiI	GAAGAC	2 cut(s)	764, 1400
BpmI	CTGGAG	1 cut(s)	1091
Bpu1102I	GCTNAGC	1 cut(s)	1062
BpuEI	CTTGAG	1 cut(s)	867
Bsa29I	ATCGAT	2 cut(s)	201, 1042
BsaHI	GRCGYC	2 cut(s)	538, 988
BsaI	GGTCTC	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 1145
Bse1I	ACTGG	2 cut(s)	878, 1074
Bse3DI	GCAATG	1 cut(s)	1319
BseBI	CCWGG	5 cut(s)	421, 489, 627, 726, 1304
BseCI	ATCGAT	2 cut(s)	201, 1042
BseGI	GGATG	5 cut(s)	497, 773, 931, 1324, 1388
BseLI	CCNNNNNNNGG	2 cut(s)	632, 1145
BseMI	GCAATG	1 cut(s)	1319
BseMII	CTCAG	3 cut(s)	183, 948, 1053
BseNI	ACTGG	2 cut(s)	878, 1074
BseRI	GAGGAG	2 cut(s)	1088, 1099
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	151, 312, 640
BshFI	GGCC	2 cut(s)	895, 1318
BshNI	GGYRCC	1 cut(s)	987
BshVI	ATCGAT	2 cut(s)	201, 1042
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	632, 1145
BsmAI	GTCTC	4 cut(s)	445, 658, 670, 740
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	895, 1318
Bso31I	GGTCTC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	522, 1255, 1402
Bsp1720I	GCTNAGC	1 cut(s)	1062
BspACI	CCGC	1 cut(s)	1112
BspANI	GGCC	2 cut(s)	895, 1318
BspCNI	CTCAG	3 cut(s)	184, 949, 1054
BspDI	ATCGAT	2 cut(s)	201, 1042
BspHI	TCATGA	2 cut(s)	120, 414
BspLI	GGNNCC	2 cut(s)	910, 989
BspT107I	GGYRCC	1 cut(s)	987
BspTNI	GGTCTC	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	1319
BsrI	ACTGG	2 cut(s)	878, 1074
BssMI	GATC	3 cut(s)	522, 1255, 1402
BssNI	GRCGYC	2 cut(s)	538, 988
BssSI	CACGAG	1 cut(s)	1371
Bst2BI	CACGAG	1 cut(s)	1371
Bst2UI	CCWGG	5 cut(s)	421, 489, 627, 726, 1304
Bst6I	CTCTTC	1 cut(s)	656
BstACI	GRCGYC	2 cut(s)	538, 988
BstAPI	GCANNNNNTGC	1 cut(s)	1330
BstC8I	GCNNGC	1 cut(s)	1035
BstDEI	CTNAG	4 cut(s)	192, 904, 957, 1062
BstF5I	GGATG	5 cut(s)	497, 773, 931, 1324, 1388
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	3 cut(s)	525, 1258, 1405
BstMAI	GTCTC	4 cut(s)	445, 658, 670, 740
BstMBI	GATC	3 cut(s)	522, 1255, 1402
BstMWI	GCNNNNNNNGC	2 cut(s)	996, 1330
BstNI	CCWGG	5 cut(s)	421, 489, 627, 726, 1304
BstNSI	RCATGY	4 cut(s)	164, 231, 839, 1037
BstSCI	CCNGG	5 cut(s)	419, 487, 625, 724, 1302
BstSFI	CTRYAG	4 cut(s)	378, 951, 1248, 1396
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	151, 312, 640
BstV2I	GAAGAC	2 cut(s)	764, 1400
Bsu15I	ATCGAT	2 cut(s)	201, 1042
BsuI	GTATCC	2 cut(s)	1142, 1247
BsuRI	GGCC	2 cut(s)	895, 1318
BsuTUI	ATCGAT	2 cut(s)	201, 1042
BtsCI	GGATG	5 cut(s)	497, 773, 931, 1324, 1388
Cac8I	GCNNGC	1 cut(s)	1035
CciI	TCATGA	2 cut(s)	120, 414
CfoI	GCGC	1 cut(s)	990
ClaI	ATCGAT	2 cut(s)	201, 1042
CsiI	ACCWGGT	2 cut(s)	419, 625
Csp6I	GTAC	4 cut(s)	237, 495, 738, 995
CspCI	CAANNNNNGTGG	2 cut(s)	872, 907
CviQI	GTAC	4 cut(s)	237, 495, 738, 995
DdeI	CTNAG	4 cut(s)	192, 904, 957, 1062
DinI	GGCGCC	1 cut(s)	989
DpnI	GATC	3 cut(s)	524, 1257, 1404
DpnII	GATC	3 cut(s)	522, 1255, 1402
DraI	TTTAAA	1 cut(s)	1357
DraIII	CACNNNGTG	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	893
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
EciI	GGCGGA	1 cut(s)	1101
Eco31I	GGTCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	1137
EcoRII	CCWGG	5 cut(s)	419, 487, 625, 724, 1302
EcoT22I	ATGCAT	3 cut(s)	229, 1039, 1188
EgeI	GGCGCC	1 cut(s)	989
EheI	GGCGCC	1 cut(s)	989
Esp3I	CGTCTC	1 cut(s)	670
FaqI	GGGAC	1 cut(s)	449
Fnu4HI	GCNGC	3 cut(s)	165, 301, 654
FokI	GGATG	5 cut(s)	504, 760, 938, 1311, 1395
Fsp4HI	GCNGC	3 cut(s)	165, 301, 654
FspBI	CTAG	6 cut(s)	6, 170, 401, 515, 735, 741
GlaI	GCGC	1 cut(s)	989
GluI	GCNGC	3 cut(s)	165, 301, 654
GsuI	CTGGAG	1 cut(s)	1091
HaeII	RGCGCY	1 cut(s)	991
HaeIII	GGCC	2 cut(s)	895, 1318
HhaI	GCGC	1 cut(s)	990
Hin1I	GRCGYC	2 cut(s)	538, 988
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HincII	GTYRAC	1 cut(s)	833
HindII	GTYRAC	1 cut(s)	833
HinfI	GANTC	6 cut(s)	40, 188, 198, 411, 484, 823
HphI	GGTGA	1 cut(s)	986
Hpy166II	GTNNAC	3 cut(s)	269, 833, 995
Hpy188I	TCNGA	6 cut(s)	110, 193, 850, 1026, 1055, 1447
Hpy188III	TCNNGA	7 cut(s)	121, 415, 605, 634, 884, 1262, 1469
Hpy8I	GTNNAC	3 cut(s)	269, 833, 995
Hpy99I	CGWCG	2 cut(s)	570, 1263
HpyAV	CCTTC	2 cut(s)	810, 1228
HpyCH4IV	ACGT	3 cut(s)	538, 829, 1173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	996, 1330
HpyF3I	CTNAG	4 cut(s)	192, 904, 957, 1062
HpySE526I	ACGT	3 cut(s)	538, 829, 1173
Hsp92I	GRCGYC	2 cut(s)	538, 988
HspAI	GCGC	1 cut(s)	988
KasI	GGCGCC	1 cut(s)	987
Kzo9I	GATC	3 cut(s)	522, 1255, 1402
LmnI	GCTCC	3 cut(s)	636, 908, 1396
Lsp1109I	GCAGC	3 cut(s)	151, 312, 640
LweI	GCATC	2 cut(s)	1173, 1333
MabI	ACCWGGT	2 cut(s)	419, 625
MaeI	CTAG	6 cut(s)	6, 170, 401, 515, 735, 741
MaeII	ACGT	3 cut(s)	538, 829, 1173
MaeIII	GTNAC	4 cut(s)	396, 423, 1166, 1292
MalI	GATC	3 cut(s)	524, 1257, 1404
MboI	GATC	3 cut(s)	522, 1255, 1402
MboII	GAAGA	8 cut(s)	136, 532, 563, 570, 673, 769, 1130, 1400
MfeI	CAATTG	2 cut(s)	1272, 1345
MhlI	GDGCHC	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	895
MluNI	TGGCCA	1 cut(s)	895
Mly113I	GGCGCC	1 cut(s)	988
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	133, 566
Mox20I	TGGCCA	1 cut(s)	895
Mph1103I	ATGCAT	3 cut(s)	229, 1039, 1188
MscI	TGGCCA	1 cut(s)	895
MseI	TTAA	5 cut(s)	135, 719, 1101, 1133, 1356
Msp20I	TGGCCA	1 cut(s)	895
MspR9I	CCNGG	5 cut(s)	421, 489, 627, 726, 1304
MunI	CAATTG	2 cut(s)	1272, 1345
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	5 cut(s)	421, 489, 627, 726, 1304
MwoI	GCNNNNNNNGC	2 cut(s)	996, 1330
NarI	GGCGCC	1 cut(s)	988
NdeII	GATC	3 cut(s)	522, 1255, 1402
NlaIV	GGNNCC	2 cut(s)	910, 989
NmuCI	GTSAC	2 cut(s)	396, 1292
NsiI	ATGCAT	3 cut(s)	229, 1039, 1188
NspI	RCATGY	4 cut(s)	164, 231, 839, 1037
PaeI	GCATGC	1 cut(s)	1037
PagI	TCATGA	2 cut(s)	120, 414
PciI	ACATGT	1 cut(s)	835
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	5 cut(s)	40, 198, 411, 484, 823
PfoI	TCCNGGA	2 cut(s)	487, 724
PkrI	GCNGC	3 cut(s)	166, 302, 655
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	991
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	835
PsiI	TTATAA	2 cut(s)	288, 644
Psp1406I	AACGTT	1 cut(s)	1173
Psp6I	CCWGG	5 cut(s)	419, 487, 625, 724, 1302
PspGI	CCWGG	5 cut(s)	419, 487, 625, 724, 1302
PspN4I	GGNNCC	2 cut(s)	910, 989
PsrI	GAACNNNNNNTAC	2 cut(s)	721, 753
RsaI	GTAC	4 cut(s)	238, 496, 739, 996
RsaNI	GTAC	4 cut(s)	237, 495, 738, 995
SaqAI	TTAA	5 cut(s)	135, 719, 1101, 1133, 1356
SatI	GCNGC	3 cut(s)	165, 301, 654
Sau3AI	GATC	3 cut(s)	522, 1255, 1402
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	5 cut(s)	421, 489, 627, 726, 1304
SduI	GDGCHC	1 cut(s)	271
SexAI	ACCWGGT	2 cut(s)	419, 625
SfaNI	GCATC	2 cut(s)	1173, 1333
SfcI	CTRYAG	4 cut(s)	378, 951, 1248, 1396
SfoI	GGCGCC	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	882
SmoI	CTYRAG	1 cut(s)	882
SpeI	ACTAGT	1 cut(s)	740
SphI	GCATGC	1 cut(s)	1037
SsiI	CCGC	1 cut(s)	1112
SspDI	GGCGCC	1 cut(s)	987
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	6 cut(s)	6, 170, 401, 515, 735, 741
StyD4I	CCNGG	5 cut(s)	419, 487, 625, 724, 1302
TaiI	ACGT	3 cut(s)	541, 832, 1176
TaqI	TCGA	3 cut(s)	201, 315, 1042
TatI	WGTACW	2 cut(s)	236, 737
TfiI	GAWTC	5 cut(s)	40, 198, 411, 484, 823
Tru1I	TTAA	5 cut(s)	135, 719, 1101, 1133, 1356
Tru9I	TTAA	5 cut(s)	135, 719, 1101, 1133, 1356
TseFI	GTSAC	2 cut(s)	396, 1292
TseI	GCWGC	3 cut(s)	164, 300, 653
Tsp45I	GTSAC	2 cut(s)	396, 1292
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	1266
XceI	RCATGY	4 cut(s)	164, 231, 839, 1037
XspI	CTAG	6 cut(s)	6, 170, 401, 515, 735, 741
ZraI	GACGTC	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	739
Zsp2I	ATGCAT	3 cut(s)	229, 1039, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.