Pentatricopeptide repeat-containing protein At1g66345
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66345 |
| fragaria_vesca | FvH4_5g33100 FvH4_5g33100 |
| prunus_persica | Prupe.4G237400_v2.0.a1 |
| pyrus_communis | pycom11g17530 |
| rosa_chinensis | RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291 |
| rosa_laevigata | RLG00000001422 |
| rosa_multiflora | Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005 |
| rosa_rugosa | Rorug07G0266200 |
| rosa_samantha | Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000 |
| rosa_wichuraiana | Rw7G034670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 560 |
| AccBSI | CCGCTC | 1 cut(s) | 1170 |
| AccI | GTMKAC | 1 cut(s) | 1509 |
| AciI | CCGC | 1 cut(s) | 1170 |
| AclWI | GGATC | 2 cut(s) | 733, 746 |
| AcsI | RAATTY | 3 cut(s) | 21, 158, 398 |
| AcuI | CTGAAG | 1 cut(s) | 392 |
| AcvI | CACGTG | 1 cut(s) | 583 |
| AdeI | CACNNNGTG | 1 cut(s) | 1010 |
| AfaI | GTAC | 1 cut(s) | 941 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 330 |
| AflII | CTTAAG | 1 cut(s) | 1568 |
| AflIII | ACRYGT | 1 cut(s) | 726 |
| AhlI | ACTAGT | 1 cut(s) | 779 |
| AjnI | CCWGG | 3 cut(s) | 329, 1376, 1390 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1449, 1481 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1157, 1189 |
| AluBI | AGCT | 7 cut(s) | 263, 276, 353, 490, 1089, 1140, 1425 |
| AluI | AGCT | 7 cut(s) | 263, 276, 353, 490, 1089, 1140, 1425 |
| Alw21I | GWGCWC | 3 cut(s) | 241, 758, 1006 |
| Alw26I | GTCTC | 3 cut(s) | 497, 659, 1508 |
| AlwI | GGATC | 2 cut(s) | 733, 746 |
| AoxI | GGCC | 2 cut(s) | 1191, 1557 |
| ApaI | GGGCCC | 1 cut(s) | 1561 |
| ApeKI | GCWGC | 2 cut(s) | 13, 260 |
| ApoI | RAATTY | 3 cut(s) | 21, 158, 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspLEI | GCGC | 2 cut(s) | 1115, 1592 |
| AspS9I | GGNCC | 3 cut(s) | 294, 1557, 1558 |
| AsuHPI | GGTGA | 2 cut(s) | 1346, 1556 |
| AvaII | GGWCC | 1 cut(s) | 294 |
| BaeGI | GKGCMC | 1 cut(s) | 1561 |
| BamHI | GGATCC | 1 cut(s) | 738 |
| BanII | GRGCYC | 2 cut(s) | 189, 1561 |
| BbrPI | CACGTG | 1 cut(s) | 583 |
| Bbv12I | GWGCWC | 3 cut(s) | 241, 758, 1006 |
| BbvI | GCAGC | 1 cut(s) | 272 |
| BccI | CCATC | 7 cut(s) | 56, 116, 173, 1048, 1153, 1198, 1363 |
| BceAI | ACGGC | 1 cut(s) | 1060 |
| BciT130I | CCWGG | 3 cut(s) | 331, 1378, 1392 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcoDI | GTCTC | 3 cut(s) | 497, 659, 1508 |
| BcuI | ACTAGT | 1 cut(s) | 779 |
| BfaI | CTAG | 4 cut(s) | 348, 780, 785, 911 |
| BfrI | CTTAAG | 1 cut(s) | 1568 |
| BisI | GCNGC | 2 cut(s) | 14, 261 |
| BlpI | GCTNAGC | 2 cut(s) | 486, 925 |
| BlsI | GCNGC | 2 cut(s) | 15, 262 |
| Bme1390I | CCNGG | 3 cut(s) | 331, 1378, 1392 |
| Bme18I | GGWCC | 1 cut(s) | 294 |
| BmgT120I | GGNCC | 3 cut(s) | 294, 1557, 1558 |
| BmiI | GGNNCC | 4 cut(s) | 219, 394, 740, 1559 |
| BmrFI | CCNGG | 3 cut(s) | 331, 1378, 1392 |
| BmrI | ACTGGG | 1 cut(s) | 265 |
| BmsI | GCATC | 5 cut(s) | 217, 334, 676, 1100, 1222 |
| BmuI | ACTGGG | 1 cut(s) | 265 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 742, 774 |
| BpmI | CTGGAG | 1 cut(s) | 1374 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 486, 925 |
| BpuEI | CTTGAG | 2 cut(s) | 938, 1162 |
| Bsa29I | ATCGAT | 1 cut(s) | 1595 |
| BsaAI | YACGTR | 1 cut(s) | 583 |
| BsaJI | CCNNGG | 1 cut(s) | 742 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 330 |
| Bse1I | ACTGG | 2 cut(s) | 260, 511 |
| Bse3DI | GCAATG | 2 cut(s) | 416, 1552 |
| BseBI | CCWGG | 3 cut(s) | 331, 1378, 1392 |
| BseCI | ATCGAT | 1 cut(s) | 1595 |
| BseDI | CCNNGG | 1 cut(s) | 742 |
| BseGI | GGATG | 6 cut(s) | 108, 349, 1115, 1176, 1237, 1409 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 330 |
| BseMI | GCAATG | 2 cut(s) | 416, 1552 |
| BseMII | CTCAG | 3 cut(s) | 96, 482, 939 |
| BseNI | ACTGG | 2 cut(s) | 260, 511 |
| BseRI | GAGGAG | 1 cut(s) | 853 |
| BseSI | GKGCMC | 1 cut(s) | 1561 |
| BseXI | GCAGC | 1 cut(s) | 272 |
| BshFI | GGCC | 2 cut(s) | 1193, 1559 |
| BshVI | ATCGAT | 1 cut(s) | 1595 |
| BsiHKAI | GWGCWC | 3 cut(s) | 241, 758, 1006 |
| BsiSI | CCGG | 1 cut(s) | 1286 |
| BslFI | GGGAC | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 330 |
| BsmAI | GTCTC | 3 cut(s) | 497, 659, 1508 |
| BsmFI | GGGAC | 1 cut(s) | 155 |
| BsnI | GGCC | 2 cut(s) | 1193, 1559 |
| Bsp120I | GGGCCC | 1 cut(s) | 1557 |
| Bsp1286I | GDGCHC | 5 cut(s) | 189, 241, 758, 1006, 1561 |
| Bsp143I | GATC | 3 cut(s) | 69, 738, 1480 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 486, 925 |
| Bsp19I | CCATGG | 1 cut(s) | 742 |
| BspACI | CCGC | 1 cut(s) | 1170 |
| BspANI | GGCC | 2 cut(s) | 1193, 1559 |
| BspCNI | CTCAG | 3 cut(s) | 95, 483, 938 |
| BspDI | ATCGAT | 1 cut(s) | 1595 |
| BspHI | TCATGA | 1 cut(s) | 1473 |
| BspLI | GGNNCC | 4 cut(s) | 219, 394, 740, 1559 |
| BspPI | GGATC | 2 cut(s) | 733, 746 |
| BspTI | CTTAAG | 1 cut(s) | 1568 |
| BsrBI | CCGCTC | 1 cut(s) | 1170 |
| BsrDI | GCAATG | 2 cut(s) | 416, 1552 |
| BsrI | ACTGG | 2 cut(s) | 260, 511 |
| BssECI | CCNNGG | 1 cut(s) | 742 |
| BssMI | GATC | 3 cut(s) | 69, 738, 1480 |
| BssNAI | GTATAC | 1 cut(s) | 1510 |
| BssT1I | CCWWGG | 1 cut(s) | 742 |
| Bst1107I | GTATAC | 1 cut(s) | 1510 |
| Bst2UI | CCWGG | 3 cut(s) | 331, 1378, 1392 |
| Bst4CI | ACNGT | 2 cut(s) | 1266, 1304 |
| Bst6I | CTCTTC | 3 cut(s) | 657, 743, 1120 |
| BstAFI | CTTAAG | 1 cut(s) | 1568 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 236 |
| BstBAI | YACGTR | 1 cut(s) | 583 |
| BstC8I | GCNNGC | 2 cut(s) | 1138, 1242 |
| BstDEI | CTNAG | 6 cut(s) | 82, 422, 486, 491, 925, 1586 |
| BstDSI | CCRYGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 6 cut(s) | 108, 349, 1115, 1176, 1237, 1409 |
| BstHHI | GCGC | 2 cut(s) | 1115, 1592 |
| BstKTI | GATC | 3 cut(s) | 72, 741, 1483 |
| BstMAI | GTCTC | 3 cut(s) | 497, 659, 1508 |
| BstMBI | GATC | 3 cut(s) | 69, 738, 1480 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 236, 1241, 1556 |
| BstNI | CCWGG | 3 cut(s) | 331, 1378, 1392 |
| BstNSI | RCATGY | 1 cut(s) | 730 |
| BstSCI | CCNGG | 3 cut(s) | 329, 1376, 1390 |
| BstSLI | GKGCMC | 1 cut(s) | 1561 |
| BstV1I | GCAGC | 1 cut(s) | 272 |
| BstX2I | RGATCY | 1 cut(s) | 738 |
| BstYI | RGATCY | 1 cut(s) | 738 |
| BstZ17I | GTATAC | 1 cut(s) | 1510 |
| Bsu15I | ATCGAT | 1 cut(s) | 1595 |
| BsuRI | GGCC | 2 cut(s) | 1193, 1559 |
| BsuTUI | ATCGAT | 1 cut(s) | 1595 |
| BtgI | CCRYGG | 1 cut(s) | 742 |
| BtsCI | GGATG | 6 cut(s) | 108, 349, 1115, 1176, 1237, 1409 |
| BtsIMutI | CAGTG | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 2 cut(s) | 1138, 1242 |
| CciI | TCATGA | 1 cut(s) | 1473 |
| CfoI | GCGC | 2 cut(s) | 1115, 1592 |
| Cfr13I | GGNCC | 3 cut(s) | 294, 1557, 1558 |
| ClaI | ATCGAT | 1 cut(s) | 1595 |
| CseI | GACGC | 1 cut(s) | 5 |
| Csp6I | GTAC | 1 cut(s) | 940 |
| CviAII | CATG | 9 cut(s) | 284, 340, 539, 727, 743, 930, 1042, 1182, 1474 |
| CviQI | GTAC | 1 cut(s) | 940 |
| DdeI | CTNAG | 6 cut(s) | 82, 422, 486, 491, 925, 1586 |
| DpnI | GATC | 3 cut(s) | 71, 740, 1482 |
| DpnII | GATC | 3 cut(s) | 69, 738, 1480 |
| DraIII | CACNNNGTG | 1 cut(s) | 1010 |
| Eam1104I | CTCTTC | 3 cut(s) | 657, 743, 1120 |
| EarI | CTCTTC | 3 cut(s) | 657, 743, 1120 |
| Eco130I | CCWWGG | 1 cut(s) | 742 |
| Eco24I | GRGCYC | 2 cut(s) | 189, 1561 |
| Eco47I | GGWCC | 1 cut(s) | 294 |
| Eco57I | CTGAAG | 1 cut(s) | 392 |
| Eco72I | CACGTG | 1 cut(s) | 583 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1557, 1558 |
| EcoRII | CCWGG | 3 cut(s) | 329, 1376, 1390 |
| EcoT14I | CCWWGG | 1 cut(s) | 742 |
| EcoT38I | GRGCYC | 2 cut(s) | 189, 1561 |
| ErhI | CCWWGG | 1 cut(s) | 742 |
| FaeI | CATG | 9 cut(s) | 287, 343, 542, 730, 746, 933, 1045, 1185, 1477 |
| FaqI | GGGAC | 1 cut(s) | 155 |
| FatI | CATG | 9 cut(s) | 283, 339, 538, 726, 742, 929, 1041, 1181, 1473 |
| FauI | CCCGC | 1 cut(s) | 1163 |
| FauNDI | CATATG | 1 cut(s) | 633 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| FblI | GTMKAC | 1 cut(s) | 1509 |
| Fnu4HI | GCNGC | 2 cut(s) | 14, 261 |
| FokI | GGATG | 6 cut(s) | 95, 356, 1122, 1163, 1244, 1396 |
| FriOI | GRGCYC | 2 cut(s) | 189, 1561 |
| Fsp4HI | GCNGC | 2 cut(s) | 14, 261 |
| FspBI | CTAG | 4 cut(s) | 348, 780, 785, 911 |
| GlaI | GCGC | 2 cut(s) | 1114, 1591 |
| GluI | GCNGC | 2 cut(s) | 14, 261 |
| GsuI | CTGGAG | 1 cut(s) | 1374 |
| HaeIII | GGCC | 2 cut(s) | 1193, 1559 |
| HapII | CCGG | 1 cut(s) | 1286 |
| HgaI | GACGC | 1 cut(s) | 5 |
| HhaI | GCGC | 2 cut(s) | 1115, 1592 |
| Hin1II | CATG | 9 cut(s) | 287, 343, 542, 730, 746, 933, 1045, 1185, 1477 |
| Hin6I | GCGC | 2 cut(s) | 1113, 1590 |
| HinP1I | GCGC | 2 cut(s) | 1113, 1590 |
| HincII | GTYRAC | 1 cut(s) | 724 |
| HindII | GTYRAC | 1 cut(s) | 724 |
| HindIII | AAGCTT | 2 cut(s) | 274, 1138 |
| HinfI | GANTC | 8 cut(s) | 80, 116, 164, 362, 413, 1339, 1373, 1470 |
| HpaII | CCGG | 1 cut(s) | 1286 |
| HphI | GGTGA | 2 cut(s) | 1346, 1556 |
| Hpy166II | GTNNAC | 4 cut(s) | 724, 940, 1257, 1510 |
| Hpy188I | TCNGA | 6 cut(s) | 125, 150, 372, 598, 1211, 1311 |
| Hpy188III | TCNNGA | 6 cut(s) | 56, 679, 866, 955, 1343, 1474 |
| Hpy8I | GTNNAC | 4 cut(s) | 724, 940, 1257, 1510 |
| Hpy99I | CGWCG | 2 cut(s) | 21, 194 |
| HpyAV | CCTTC | 7 cut(s) | 208, 695, 771, 815, 1010, 1204, 1571 |
| HpyCH4III | ACNGT | 2 cut(s) | 1266, 1304 |
| HpyCH4IV | ACGT | 2 cut(s) | 235, 582 |
| HpyCH4V | TGCA | 5 cut(s) | 230, 696, 850, 1235, 1550 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 236, 1241, 1556 |
| HpyF3I | CTNAG | 6 cut(s) | 82, 422, 486, 491, 925, 1586 |
| HpySE526I | ACGT | 2 cut(s) | 235, 582 |
| Hsp92II | CATG | 9 cut(s) | 287, 343, 542, 730, 746, 933, 1045, 1185, 1477 |
| HspAI | GCGC | 2 cut(s) | 1113, 1590 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 3 cut(s) | 69, 738, 1480 |
| LmnI | GCTCC | 2 cut(s) | 1001, 1394 |
| Lsp1109I | GCAGC | 1 cut(s) | 272 |
| LweI | GCATC | 5 cut(s) | 217, 334, 676, 1100, 1222 |
| MaeI | CTAG | 4 cut(s) | 348, 780, 785, 911 |
| MaeII | ACGT | 2 cut(s) | 235, 582 |
| MaeIII | GTNAC | 4 cut(s) | 113, 436, 471, 1145 |
| MalI | GATC | 3 cut(s) | 71, 740, 1482 |
| MbiI | CCGCTC | 1 cut(s) | 1170 |
| MboI | GATC | 3 cut(s) | 69, 738, 1480 |
| MfeI | CAATTG | 1 cut(s) | 873 |
| MflI | RGATCY | 1 cut(s) | 738 |
| MhlI | GDGCHC | 5 cut(s) | 189, 241, 758, 1006, 1561 |
| MluCI | AATT | 9 cut(s) | 21, 36, 136, 158, 173, 209, 398, 649, 873 |
| MlyI | GAGTC | 3 cut(s) | 74, 110, 1382 |
| MmeI | TCCRAC | 4 cut(s) | 113, 619, 711, 1189 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 6 cut(s) | 35, 171, 551, 906, 1569, 1600 |
| MspCI | CTTAAG | 1 cut(s) | 1568 |
| MspI | CCGG | 1 cut(s) | 1286 |
| MspR9I | CCNGG | 3 cut(s) | 331, 1378, 1392 |
| MunI | CAATTG | 1 cut(s) | 873 |
| MvaI | CCWGG | 3 cut(s) | 331, 1378, 1392 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 236, 1241, 1556 |
| NcoI | CCATGG | 1 cut(s) | 742 |
| NdeI | CATATG | 1 cut(s) | 633 |
| NdeII | GATC | 3 cut(s) | 69, 738, 1480 |
| NlaIII | CATG | 9 cut(s) | 287, 343, 542, 730, 746, 933, 1045, 1185, 1477 |
| NlaIV | GGNNCC | 4 cut(s) | 219, 394, 740, 1559 |
| NmuCI | GTSAC | 1 cut(s) | 113 |
| NspI | RCATGY | 1 cut(s) | 730 |
| PagI | TCATGA | 1 cut(s) | 1473 |
| PciI | ACATGT | 1 cut(s) | 726 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 5 cut(s) | 164, 362, 413, 1339, 1470 |
| PfoI | TCCNGGA | 1 cut(s) | 1390 |
| PkrI | GCNGC | 2 cut(s) | 15, 262 |
| PleI | GAGTC | 3 cut(s) | 74, 110, 1381 |
| PmaCI | CACGTG | 1 cut(s) | 583 |
| PmlI | CACGTG | 1 cut(s) | 583 |
| PpsI | GAGTC | 3 cut(s) | 74, 110, 1381 |
| Ppu21I | YACGTR | 1 cut(s) | 583 |
| PscI | ACATGT | 1 cut(s) | 726 |
| PsiI | TTATAA | 1 cut(s) | 560 |
| Psp6I | CCWGG | 3 cut(s) | 329, 1376, 1390 |
| PspCI | CACGTG | 1 cut(s) | 583 |
| PspGI | CCWGG | 3 cut(s) | 329, 1376, 1390 |
| PspN4I | GGNNCC | 4 cut(s) | 219, 394, 740, 1559 |
| PspOMI | GGGCCC | 1 cut(s) | 1557 |
| PspPI | GGNCC | 3 cut(s) | 294, 1557, 1558 |
| PsuI | RGATCY | 1 cut(s) | 738 |
| RsaI | GTAC | 1 cut(s) | 941 |
| RsaNI | GTAC | 1 cut(s) | 940 |
| SaqAI | TTAA | 6 cut(s) | 35, 171, 551, 906, 1569, 1600 |
| SatI | GCNGC | 2 cut(s) | 14, 261 |
| Sau3AI | GATC | 3 cut(s) | 69, 738, 1480 |
| Sau96I | GGNCC | 3 cut(s) | 294, 1557, 1558 |
| SchI | GAGTC | 3 cut(s) | 74, 110, 1382 |
| ScrFI | CCNGG | 3 cut(s) | 331, 1378, 1392 |
| SduI | GDGCHC | 5 cut(s) | 189, 241, 758, 1006, 1561 |
| SfaNI | GCATC | 5 cut(s) | 217, 334, 676, 1100, 1222 |
| SinI | GGWCC | 1 cut(s) | 294 |
| SmlI | CTYRAG | 3 cut(s) | 953, 1141, 1568 |
| SmoI | CTYRAG | 3 cut(s) | 953, 1141, 1568 |
| SpeI | ACTAGT | 1 cut(s) | 779 |
| Sse9I | AATT | 9 cut(s) | 21, 36, 136, 158, 173, 209, 398, 649, 873 |
| SsiI | CCGC | 1 cut(s) | 1170 |
| SspMI | CTAG | 4 cut(s) | 348, 780, 785, 911 |
| StyD4I | CCNGG | 3 cut(s) | 329, 1376, 1390 |
| StyI | CCWWGG | 1 cut(s) | 742 |
| TaaI | ACNGT | 2 cut(s) | 1266, 1304 |
| TaiI | ACGT | 2 cut(s) | 238, 585 |
| TaqI | TCGA | 4 cut(s) | 19, 192, 967, 1595 |
| TasI | AATT | 9 cut(s) | 21, 36, 136, 158, 173, 209, 398, 649, 873 |
| TfiI | GAWTC | 5 cut(s) | 164, 362, 413, 1339, 1470 |
| Tru1I | TTAA | 6 cut(s) | 35, 171, 551, 906, 1569, 1600 |
| Tru9I | TTAA | 6 cut(s) | 35, 171, 551, 906, 1569, 1600 |
| TscAI | CASTG | 1 cut(s) | 260 |
| TseFI | GTSAC | 1 cut(s) | 113 |
| TseI | GCWGC | 2 cut(s) | 13, 260 |
| Tsp45I | GTSAC | 1 cut(s) | 113 |
| TspDTI | ATGAA | 7 cut(s) | 302, 405, 675, 1061, 1165, 1490, 1590 |
| TspGWI | ACGGA | 2 cut(s) | 101, 1402 |
| TspRI | CASTG | 1 cut(s) | 260 |
| Vha464I | CTTAAG | 1 cut(s) | 1568 |
| VpaK11BI | GGWCC | 1 cut(s) | 294 |
| XapI | RAATTY | 3 cut(s) | 21, 158, 398 |
| XceI | RCATGY | 1 cut(s) | 730 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 337 |
| XmiI | GTMKAC | 1 cut(s) | 1509 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 4 cut(s) | 348, 780, 785, 911 |