Prupe.4G237400_v2.0.a1

Pentatricopeptide repeat-containing protein At1g66345

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
15500905 .. 15502506
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G237400.1

Sequence Viewer

Length: 1602 bp
ATGGCTTTTTGGCTGCGTCGAATTTCAAAATCTTTAATTCCCATACCCATCAATCAGGAAACCCGACTGATCAATACAGACTCAGCACCAAAAGATGTTGCCAAAGCCATCCGTGACTCATTCAGAAGCAGTTGGAATTGGGACACTCTGACGACCAAATTTGAATCTGTTAAATTAGATGGAGGGCTCGTCGATAGTGTTTTGTTAGAATTGAAGGAACCCATTGATGCAAAACGTGCTCTGGGTTTCTTCCACTGGGCAGCTCACAGGAAAAGCTTTGAGCATGGGGTTTGGTCCTACTCCATAACCATTCATATTTTAGCCAGAGCCAGGTTGCTCATGGATGCTAGAGCTTTGCTTGAATCAGTTCTGAAGAAAACTGCTGAAAATGGTTCCAAATTTTCAGTTGTGGATTCATTGCTTAGTAGTTATGAGGTTACTGCTTCAAACCCATTTGTGTTTGATTTGCTGTTACAGGCTTATGCTAAGCTGAGAATGTTTGAGACTGGTTTTGATGTTTGTTGCTATTTGGGGGAACATGGGTTGCCTTTAAGTCTTATAACTTACAACACTCTGCTTCACGTGGTTCAAAAATCTGACCAGACTGCTCTGGTTTGGAAGATTTATGAGCATATGGTTGGAAAAAGAAATTACCCAAATGAAGAGACAATCAAAATCTTGATTGATGCTTTGTGCAAGGAAGGGAAGTTGAAGAAATGCGTTGACATGTTGGACAGGATCCATGGGAAGAGGTGCTCTCCTTCTGTGATTGTGAATACTAGTCTAGTTTTTAGTATTTTGGAGGGGGGTAGGGTTGAAGAAGGTTTGATGTTGTTGAGGAGAATGTTGCAGAAGAATATGGTTCTTGATACAATTGCTTACTCATTGATTGTTTATGCTAAAGTTAAACTAGGAGATGTATGCTCAGCATGGGAGGTGTACGAAGAAATGCTCAAGAGAGGTTTTCGAGCAAACTCTTTTGTCTATACCTTGTTTATGGGAGCACATTGTGAGGAAGGAAGAATGGAGGAAGCACAAGGCATGATGAATGAGATGGAAAATATGGATTTGAAGCCGTTTGATGAGAGCTATAATCTTCTTATTGAGGGATGCGCTAAAGCAGGAAGAGTGGAAGCAAGCTTGAGTTACTTGAAGAAGATGGTGGAGAGCGGGTTCATCCCATGTCGTTCGGCCTTCAATGAGATGGTCGGAAAGTTATGTGAAACAGGGGATGCAGAGCAAGCAAATACAATGTTTACTATACTGTTAGATAAAGGGTTCTTGCCGGACAGCACCACATACGGTCATCTGATTGACGGGTATGGGAGAAAAGGTGAGATTCAGGAGGTTGTGAAACTCTATTATGAGATGGAGTCCAGGTCGCTTTCTCCAGGAGCATTGGTTTTTACATCCGTGATAAAGAGCTTCTGCCAATGTGGGAAAGTGGAGGAAGCAGAAAGGTATTTTGGAATCATGAAAGATCGTTCAATAGCCCCAAGTTTATGTGTATACGAGACATTGATTGCCAACCACTTTGACAAGGGCAATGCAGAAAGGGCCCTTCACCTTAAGAATGAAATGGAACTTAGCGCATCGATTTAA

Protein Analysis

534

Amino Acids

60.3

Weight (kDa)

6.35

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 1170
AccI GTMKAC 1 cut(s) 1509
AciI CCGC 1 cut(s) 1170
AclWI GGATC 2 cut(s) 733, 746
AcsI RAATTY 3 cut(s) 21, 158, 398
AcuI CTGAAG 1 cut(s) 392
AcvI CACGTG 1 cut(s) 583
AdeI CACNNNGTG 1 cut(s) 1010
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 1 cut(s) 330
AflII CTTAAG 1 cut(s) 1568
AflIII ACRYGT 1 cut(s) 726
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 3 cut(s) 329, 1376, 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 1449, 1481
AloI GAACNNNNNNTCC 2 cut(s) 1157, 1189
AluBI AGCT 7 cut(s) 263, 276, 353, 490, 1089, 1140, 1425
AluI AGCT 7 cut(s) 263, 276, 353, 490, 1089, 1140, 1425
Alw21I GWGCWC 3 cut(s) 241, 758, 1006
Alw26I GTCTC 3 cut(s) 497, 659, 1508
AlwI GGATC 2 cut(s) 733, 746
AoxI GGCC 2 cut(s) 1191, 1557
ApaI GGGCCC 1 cut(s) 1561
ApeKI GCWGC 2 cut(s) 13, 260
ApoI RAATTY 3 cut(s) 21, 158, 398
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 2 cut(s) 1115, 1592
AspS9I GGNCC 3 cut(s) 294, 1557, 1558
AsuHPI GGTGA 2 cut(s) 1346, 1556
AvaII GGWCC 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 1561
BamHI GGATCC 1 cut(s) 738
BanII GRGCYC 2 cut(s) 189, 1561
BbrPI CACGTG 1 cut(s) 583
Bbv12I GWGCWC 3 cut(s) 241, 758, 1006
BbvI GCAGC 1 cut(s) 272
BccI CCATC 7 cut(s) 56, 116, 173, 1048, 1153, 1198, 1363
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 3 cut(s) 331, 1378, 1392
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 497, 659, 1508
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 4 cut(s) 348, 780, 785, 911
BfrI CTTAAG 1 cut(s) 1568
BisI GCNGC 2 cut(s) 14, 261
BlpI GCTNAGC 2 cut(s) 486, 925
BlsI GCNGC 2 cut(s) 15, 262
Bme1390I CCNGG 3 cut(s) 331, 1378, 1392
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 294, 1557, 1558
BmiI GGNNCC 4 cut(s) 219, 394, 740, 1559
BmrFI CCNGG 3 cut(s) 331, 1378, 1392
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 5 cut(s) 217, 334, 676, 1100, 1222
BmuI ACTGGG 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 742, 774
BpmI CTGGAG 1 cut(s) 1374
Bpu1102I GCTNAGC 2 cut(s) 486, 925
BpuEI CTTGAG 2 cut(s) 938, 1162
Bsa29I ATCGAT 1 cut(s) 1595
BsaAI YACGTR 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 742
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 260, 511
Bse3DI GCAATG 2 cut(s) 416, 1552
BseBI CCWGG 3 cut(s) 331, 1378, 1392
BseCI ATCGAT 1 cut(s) 1595
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 6 cut(s) 108, 349, 1115, 1176, 1237, 1409
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 2 cut(s) 416, 1552
BseMII CTCAG 3 cut(s) 96, 482, 939
BseNI ACTGG 2 cut(s) 260, 511
BseRI GAGGAG 1 cut(s) 853
BseSI GKGCMC 1 cut(s) 1561
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 1193, 1559
BshVI ATCGAT 1 cut(s) 1595
BsiHKAI GWGCWC 3 cut(s) 241, 758, 1006
BsiSI CCGG 1 cut(s) 1286
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 3 cut(s) 497, 659, 1508
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 1193, 1559
Bsp120I GGGCCC 1 cut(s) 1557
Bsp1286I GDGCHC 5 cut(s) 189, 241, 758, 1006, 1561
Bsp143I GATC 3 cut(s) 69, 738, 1480
Bsp1720I GCTNAGC 2 cut(s) 486, 925
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 1 cut(s) 1170
BspANI GGCC 2 cut(s) 1193, 1559
BspCNI CTCAG 3 cut(s) 95, 483, 938
BspDI ATCGAT 1 cut(s) 1595
BspHI TCATGA 1 cut(s) 1473
BspLI GGNNCC 4 cut(s) 219, 394, 740, 1559
BspPI GGATC 2 cut(s) 733, 746
BspTI CTTAAG 1 cut(s) 1568
BsrBI CCGCTC 1 cut(s) 1170
BsrDI GCAATG 2 cut(s) 416, 1552
BsrI ACTGG 2 cut(s) 260, 511
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 3 cut(s) 69, 738, 1480
BssNAI GTATAC 1 cut(s) 1510
BssT1I CCWWGG 1 cut(s) 742
Bst1107I GTATAC 1 cut(s) 1510
Bst2UI CCWGG 3 cut(s) 331, 1378, 1392
Bst4CI ACNGT 2 cut(s) 1266, 1304
Bst6I CTCTTC 3 cut(s) 657, 743, 1120
BstAFI CTTAAG 1 cut(s) 1568
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 1138, 1242
BstDEI CTNAG 6 cut(s) 82, 422, 486, 491, 925, 1586
BstDSI CCRYGG 1 cut(s) 742
BstF5I GGATG 6 cut(s) 108, 349, 1115, 1176, 1237, 1409
BstHHI GCGC 2 cut(s) 1115, 1592
BstKTI GATC 3 cut(s) 72, 741, 1483
BstMAI GTCTC 3 cut(s) 497, 659, 1508
BstMBI GATC 3 cut(s) 69, 738, 1480
BstMWI GCNNNNNNNGC 3 cut(s) 236, 1241, 1556
BstNI CCWGG 3 cut(s) 331, 1378, 1392
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 3 cut(s) 329, 1376, 1390
BstSLI GKGCMC 1 cut(s) 1561
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BstZ17I GTATAC 1 cut(s) 1510
Bsu15I ATCGAT 1 cut(s) 1595
BsuRI GGCC 2 cut(s) 1193, 1559
BsuTUI ATCGAT 1 cut(s) 1595
BtgI CCRYGG 1 cut(s) 742
BtsCI GGATG 6 cut(s) 108, 349, 1115, 1176, 1237, 1409
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 1138, 1242
CciI TCATGA 1 cut(s) 1473
CfoI GCGC 2 cut(s) 1115, 1592
Cfr13I GGNCC 3 cut(s) 294, 1557, 1558
ClaI ATCGAT 1 cut(s) 1595
CseI GACGC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 940
CviAII CATG 9 cut(s) 284, 340, 539, 727, 743, 930, 1042, 1182, 1474
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 6 cut(s) 82, 422, 486, 491, 925, 1586
DpnI GATC 3 cut(s) 71, 740, 1482
DpnII GATC 3 cut(s) 69, 738, 1480
DraIII CACNNNGTG 1 cut(s) 1010
Eam1104I CTCTTC 3 cut(s) 657, 743, 1120
EarI CTCTTC 3 cut(s) 657, 743, 1120
Eco130I CCWWGG 1 cut(s) 742
Eco24I GRGCYC 2 cut(s) 189, 1561
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 392
Eco72I CACGTG 1 cut(s) 583
EcoO109I RGGNCCY 2 cut(s) 1557, 1558
EcoRII CCWGG 3 cut(s) 329, 1376, 1390
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 2 cut(s) 189, 1561
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 9 cut(s) 287, 343, 542, 730, 746, 933, 1045, 1185, 1477
FaqI GGGAC 1 cut(s) 155
FatI CATG 9 cut(s) 283, 339, 538, 726, 742, 929, 1041, 1181, 1473
FauI CCCGC 1 cut(s) 1163
FauNDI CATATG 1 cut(s) 633
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 1509
Fnu4HI GCNGC 2 cut(s) 14, 261
FokI GGATG 6 cut(s) 95, 356, 1122, 1163, 1244, 1396
FriOI GRGCYC 2 cut(s) 189, 1561
Fsp4HI GCNGC 2 cut(s) 14, 261
FspBI CTAG 4 cut(s) 348, 780, 785, 911
GlaI GCGC 2 cut(s) 1114, 1591
GluI GCNGC 2 cut(s) 14, 261
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 2 cut(s) 1193, 1559
HapII CCGG 1 cut(s) 1286
HgaI GACGC 1 cut(s) 5
HhaI GCGC 2 cut(s) 1115, 1592
Hin1II CATG 9 cut(s) 287, 343, 542, 730, 746, 933, 1045, 1185, 1477
Hin6I GCGC 2 cut(s) 1113, 1590
HinP1I GCGC 2 cut(s) 1113, 1590
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 2 cut(s) 274, 1138
HinfI GANTC 8 cut(s) 80, 116, 164, 362, 413, 1339, 1373, 1470
HpaII CCGG 1 cut(s) 1286
HphI GGTGA 2 cut(s) 1346, 1556
Hpy166II GTNNAC 4 cut(s) 724, 940, 1257, 1510
Hpy188I TCNGA 6 cut(s) 125, 150, 372, 598, 1211, 1311
Hpy188III TCNNGA 6 cut(s) 56, 679, 866, 955, 1343, 1474
Hpy8I GTNNAC 4 cut(s) 724, 940, 1257, 1510
Hpy99I CGWCG 2 cut(s) 21, 194
HpyAV CCTTC 7 cut(s) 208, 695, 771, 815, 1010, 1204, 1571
HpyCH4III ACNGT 2 cut(s) 1266, 1304
HpyCH4IV ACGT 2 cut(s) 235, 582
HpyCH4V TGCA 5 cut(s) 230, 696, 850, 1235, 1550
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 1241, 1556
HpyF3I CTNAG 6 cut(s) 82, 422, 486, 491, 925, 1586
HpySE526I ACGT 2 cut(s) 235, 582
Hsp92II CATG 9 cut(s) 287, 343, 542, 730, 746, 933, 1045, 1185, 1477
HspAI GCGC 2 cut(s) 1113, 1590
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 738, 1480
LmnI GCTCC 2 cut(s) 1001, 1394
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 5 cut(s) 217, 334, 676, 1100, 1222
MaeI CTAG 4 cut(s) 348, 780, 785, 911
MaeII ACGT 2 cut(s) 235, 582
MaeIII GTNAC 4 cut(s) 113, 436, 471, 1145
MalI GATC 3 cut(s) 71, 740, 1482
MbiI CCGCTC 1 cut(s) 1170
MboI GATC 3 cut(s) 69, 738, 1480
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 5 cut(s) 189, 241, 758, 1006, 1561
MluCI AATT 9 cut(s) 21, 36, 136, 158, 173, 209, 398, 649, 873
MlyI GAGTC 3 cut(s) 74, 110, 1382
MmeI TCCRAC 4 cut(s) 113, 619, 711, 1189
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 6 cut(s) 35, 171, 551, 906, 1569, 1600
MspCI CTTAAG 1 cut(s) 1568
MspI CCGG 1 cut(s) 1286
MspR9I CCNGG 3 cut(s) 331, 1378, 1392
MunI CAATTG 1 cut(s) 873
MvaI CCWGG 3 cut(s) 331, 1378, 1392
MwoI GCNNNNNNNGC 3 cut(s) 236, 1241, 1556
NcoI CCATGG 1 cut(s) 742
NdeI CATATG 1 cut(s) 633
NdeII GATC 3 cut(s) 69, 738, 1480
NlaIII CATG 9 cut(s) 287, 343, 542, 730, 746, 933, 1045, 1185, 1477
NlaIV GGNNCC 4 cut(s) 219, 394, 740, 1559
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 730
PagI TCATGA 1 cut(s) 1473
PciI ACATGT 1 cut(s) 726
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 5 cut(s) 164, 362, 413, 1339, 1470
PfoI TCCNGGA 1 cut(s) 1390
PkrI GCNGC 2 cut(s) 15, 262
PleI GAGTC 3 cut(s) 74, 110, 1381
PmaCI CACGTG 1 cut(s) 583
PmlI CACGTG 1 cut(s) 583
PpsI GAGTC 3 cut(s) 74, 110, 1381
Ppu21I YACGTR 1 cut(s) 583
PscI ACATGT 1 cut(s) 726
PsiI TTATAA 1 cut(s) 560
Psp6I CCWGG 3 cut(s) 329, 1376, 1390
PspCI CACGTG 1 cut(s) 583
PspGI CCWGG 3 cut(s) 329, 1376, 1390
PspN4I GGNNCC 4 cut(s) 219, 394, 740, 1559
PspOMI GGGCCC 1 cut(s) 1557
PspPI GGNCC 3 cut(s) 294, 1557, 1558
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
SaqAI TTAA 6 cut(s) 35, 171, 551, 906, 1569, 1600
SatI GCNGC 2 cut(s) 14, 261
Sau3AI GATC 3 cut(s) 69, 738, 1480
Sau96I GGNCC 3 cut(s) 294, 1557, 1558
SchI GAGTC 3 cut(s) 74, 110, 1382
ScrFI CCNGG 3 cut(s) 331, 1378, 1392
SduI GDGCHC 5 cut(s) 189, 241, 758, 1006, 1561
SfaNI GCATC 5 cut(s) 217, 334, 676, 1100, 1222
SinI GGWCC 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 953, 1141, 1568
SmoI CTYRAG 3 cut(s) 953, 1141, 1568
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 9 cut(s) 21, 36, 136, 158, 173, 209, 398, 649, 873
SsiI CCGC 1 cut(s) 1170
SspMI CTAG 4 cut(s) 348, 780, 785, 911
StyD4I CCNGG 3 cut(s) 329, 1376, 1390
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 2 cut(s) 1266, 1304
TaiI ACGT 2 cut(s) 238, 585
TaqI TCGA 4 cut(s) 19, 192, 967, 1595
TasI AATT 9 cut(s) 21, 36, 136, 158, 173, 209, 398, 649, 873
TfiI GAWTC 5 cut(s) 164, 362, 413, 1339, 1470
Tru1I TTAA 6 cut(s) 35, 171, 551, 906, 1569, 1600
Tru9I TTAA 6 cut(s) 35, 171, 551, 906, 1569, 1600
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 13, 260
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 7 cut(s) 302, 405, 675, 1061, 1165, 1490, 1590
TspGWI ACGGA 2 cut(s) 101, 1402
TspRI CASTG 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 1568
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 3 cut(s) 21, 158, 398
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 1509
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 4 cut(s) 348, 780, 785, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.