Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011738

Physical Location & Seq

Genomic Coordinates Forward (+)

56315347 .. 56317918

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGTTGTCAGAGCCATCTGTGATTCTTTCAGAACCGGTTGGAAACTGGGATGCTCTGACATCAAGATTTGATTCTCTCAAATTAGATGGAAAGCTTGTTGAGAGTGTGTTGTTAGAACTGAAGGAACCAGTTGATGCAAAACGTGCTCTGGGTTTCTTCCACTGGGCATCAAACAGGAAAGGGTTTGATCATGGGGTCTGGTCCTACTCCATAGCCATTCATATTTTGGTCAGAGCCAAGATGGTCATGGATGCTAGAGCTTTGATCGAATCGGTTTTGAAGAAGAATGTTGGAAATGAGTTGAAATTTTCGGTTGTGGATTCGTTACTTAGTAGTTACGAGGTTACTGCTTCGAACCCTTTTGTGTTTGATTTGCTTGTACAGACTTACGCTAAAATGAGAATGTTTGAGACTGGTTTTGATGTTTGTTGCTATTTGAGGGAACGTGGGTTGCCTCTAAGTCTTGTAAGTTGCAATAGTTTGCTTCGAGTTGTGCAAAGAATGGACCGAAATGGTCTGGTTTGGAAGATTTATGAGCATATGGTGGAAAAAAGAAGTTATCCGAATGATGAGACGGTGAGGATCTTGATTGATGCTTTGTGCAAGGAAGGGGAGTTGCGGAAATATGCCGACATGTTGGAGAGGATTCATGGGAAGAAATGTTCTCCTTCTGTGATTGTGAATGCCAGTTTGGTGTTTAGGATTTTGGAGGAGGGTAGAGTTGAAGAAGGTGTGGTGTTACTGAAGAGAATGTTGCAAAAGAATATGGTTCTTGATACGATTGCTTACTCATTGATTGTTCATGCTAAAGTTAAACTAGGAAATTTAAGCTCTGCACAGGAGGTGTATGAAGAAATGCTTAAGAGAGGTTTTCGAGCAAACTCTTTTGTCTATACCTTGTTCATTGAGGCTCATTGTAGAGCGGGAAGAATTGATGAAGCACAATCCATGATGTATGAGATGGGAAATGTGGATTTGAAGCCATATGATGAGAGCTATAATTTTCTTATTGAGGGATGTGCTAGAGCTGGTAGAGTGGAAGAAAGTGTGAGTTACTTGAAGCAGATGATGGAGAGCAGGTTCATTCCTAGTCTTGGGGCTTTCAATGAGATGGTTGGAAAGCTTTGTGAAATTGGGGATGCGGACGAAGCCAATGCGATGTTAACTATGCTGTTAGATAAAGGGTTCTTACCGAATGACATTACGTACTCTCTTCTGATTGATGGATATGCGAGAAAGGGGGAGAATGATGAAGTTCTGAAGCTATATTATGAGATGGAGTCCAGGTCACTTTCTCCTGGATTATTGGTTTTTACATCCTTGATAAAGAGCTTTTGCCAATGCGGGAAATTGGAGGAAGCAGAAAAGTATTTCAGAATCATGAAAGATCGATCAATAGCCCCAAGTTTATCTACATATGAGACATCGATTGCGAACCACTTTGAGCAGGGAAATACAGAAAGGGCTGATTTCTTGCCTTGCAATGAAATGGATTTGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

501

Amino Acids

57.04

Weight (kDa)

5.56

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 202	6.2e-07	PPR repeat family
PPR_2	PF13041	259 - 307	1.1e-07	PPR repeat family
PPR_1	PF12854	289 - 321	4.2e-06	PPR repeat
PPR_2	PF13041	294 - 342	3.2e-07	PPR repeat family
PPR	PF01535	332 - 360	9.3e-06	PPR repeat
PPR_2	PF13041	364 - 412	2.7e-07	PPR repeat family
PPR_1	PF12854	394 - 427	5e-06	PPR repeat
PPR	PF01535	401 - 429	1.1e-06	PPR repeat
PPR_1	PF12854	431 - 462	1.4e-06	PPR repeat
PPR_2	PF13041	436 - 475	4e-08	PPR repeat family
PPR	PF01535	437 - 465	5.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66345
fragaria_vesca	FvH4_5g33100 FvH4_5g33100
prunus_persica	Prupe.4G237400_v2.0.a1
pyrus_communis	pycom11g17530
rosa_chinensis	RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291
rosa_laevigata	RLG00000001422
rosa_multiflora	Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005
rosa_rugosa	Rorug07G0266200
rosa_samantha	Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000
rosa_wichuraiana	Rw7G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1068
AccBSI	CCGCTC	1 cut(s)	923
AciI	CCGC	4 cut(s)	619, 923, 1142, 1344
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	2 cut(s)	305, 823
AcuI	CTGAAG	3 cut(s)	140, 764, 1280
AfaI	GTAC	2 cut(s)	381, 1208
AfiI	CCNNNNNNNGG	1 cut(s)	1094
AflII	CTTAAG	1 cut(s)	860
AflIII	ACRYGT	1 cut(s)	633
AgeI	ACCGGT	1 cut(s)	34
AgsI	TTSAA	7 cut(s)	280, 304, 725, 979, 1060, 1105, 1498
AjnI	CCWGG	2 cut(s)	1283, 1297
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AloI	GAACNNNNNNTCC	4 cut(s)	646, 678, 1064, 1096
AluBI	AGCT	8 cut(s)	94, 260, 831, 996, 1028, 1123, 1264, 1332
AluI	AGCT	8 cut(s)	94, 260, 831, 996, 1028, 1123, 1264, 1332
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	3 cut(s)	404, 566, 1415
AlwI	GGATC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	305, 823
AsiGI	ACCGGT	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	201, 505
AsuHPI	GGTGA	1 cut(s)	589
AsuII	TTCGAA	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	201, 505
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	8 cut(s)	22, 80, 235, 955, 1063, 1105, 1217, 1270
BcgI	CGANNNNNNTGC	4 cut(s)	329, 363, 1136, 1170
BciT130I	CCWGG	2 cut(s)	1285, 1299
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	404, 566, 1415
BfaI	CTAG	4 cut(s)	255, 818, 1023, 1089
BfrI	CTTAAG	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	1068
Bme1390I	CCNGG	2 cut(s)	1285, 1299
Bme18I	GGWCC	2 cut(s)	201, 505
BmgT120I	GGNCC	2 cut(s)	201, 505
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	1285, 1299
BmrI	ACTGGG	2 cut(s)	55, 172
BmsI	GCATC	6 cut(s)	40, 124, 176, 241, 583, 1129
BmuI	ACTGGG	2 cut(s)	55, 172
Bpu14I	TTCGAA	1 cut(s)	353
Bsa29I	ATCGAT	2 cut(s)	1390, 1427
BsaAI	YACGTR	1 cut(s)	1206
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	1064, 1094, 1271, 1301
Bsc4I	CCNNNNNNNGG	1 cut(s)	1094
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	5 cut(s)	50, 128, 167, 418, 687
Bse3DI	GCAATG	1 cut(s)	1489
BseBI	CCWGG	2 cut(s)	1285, 1299
BseCI	ATCGAT	2 cut(s)	1390, 1427
BseGI	GGATG	5 cut(s)	55, 256, 1022, 1144, 1316
BseLI	CCNNNNNNNGG	1 cut(s)	1094
BseMI	GCAATG	1 cut(s)	1489
BseNI	ACTGG	5 cut(s)	50, 128, 167, 418, 687
BseRI	GAGGAG	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	819
BshTI	ACCGGT	1 cut(s)	34
BshVI	ATCGAT	2 cut(s)	1390, 1427
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	1094
BsmAI	GTCTC	3 cut(s)	404, 566, 1415
BsmBI	CGTCTC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	688
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	5 cut(s)	187, 264, 582, 1387, 1391
BspACI	CCGC	4 cut(s)	619, 923, 1142, 1344
BspDI	ATCGAT	2 cut(s)	1390, 1427
BspHI	TCATGA	1 cut(s)	1380
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	1068
BspPI	GGATC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	860
BsrBI	CCGCTC	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	1489
BsrFI	RCCGGY	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	5 cut(s)	50, 128, 167, 418, 687
BssAI	RCCGGY	1 cut(s)	34
BssMI	GATC	5 cut(s)	187, 264, 582, 1387, 1391
Bst2UI	CCWGG	2 cut(s)	1285, 1299
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	2 cut(s)	740, 1218
BstAFI	CTTAAG	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	379
BstBAI	YACGTR	1 cut(s)	1206
BstBI	TTCGAA	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	329, 458
BstF5I	GGATG	5 cut(s)	55, 256, 1022, 1144, 1316
BstKTI	GATC	5 cut(s)	190, 267, 585, 1390, 1394
BstMAI	GTCTC	3 cut(s)	404, 566, 1415
BstMBI	GATC	5 cut(s)	187, 264, 582, 1387, 1391
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 1148
BstNI	CCWGG	2 cut(s)	1285, 1299
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	1283, 1297
BstSNI	TACGTA	1 cut(s)	1206
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
Bsu15I	ATCGAT	2 cut(s)	1390, 1427
BsuTUI	ATCGAT	2 cut(s)	1390, 1427
BtgZI	GCGATG	1 cut(s)	1172
BtsCI	GGATG	5 cut(s)	55, 256, 1022, 1144, 1316
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	1068
CciI	TCATGA	1 cut(s)	1380
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	201, 505
ClaI	ATCGAT	2 cut(s)	1390, 1427
Csp6I	GTAC	2 cut(s)	380, 1207
CspAI	ACCGGT	1 cut(s)	34
CviAII	CATG	7 cut(s)	191, 247, 634, 650, 803, 949, 1381
CviQI	GTAC	2 cut(s)	380, 1207
DdeI	CTNAG	2 cut(s)	329, 458
DpnI	GATC	5 cut(s)	189, 266, 584, 1389, 1393
DpnII	GATC	5 cut(s)	187, 264, 582, 1387, 1391
Eam1104I	CTCTTC	2 cut(s)	740, 1218
EarI	CTCTTC	2 cut(s)	740, 1218
Eco105I	TACGTA	1 cut(s)	1206
Eco47I	GGWCC	2 cut(s)	201, 505
Eco57I	CTGAAG	3 cut(s)	140, 764, 1280
EcoRII	CCWGG	2 cut(s)	1283, 1297
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	7 cut(s)	194, 250, 637, 653, 806, 952, 1384
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FatI	CATG	7 cut(s)	190, 246, 633, 649, 802, 948, 1380
FauI	CCCGC	2 cut(s)	916, 1337
FauNDI	CATATG	3 cut(s)	540, 985, 1417
FbaI	TGATCA	1 cut(s)	187
FokI	GGATG	5 cut(s)	62, 263, 1029, 1151, 1303
FspBI	CTAG	4 cut(s)	255, 818, 1023, 1089
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	7 cut(s)	194, 250, 637, 653, 806, 952, 1384
HincII	GTYRAC	1 cut(s)	1164
HindII	GTYRAC	1 cut(s)	1164
HindIII	AAGCTT	2 cut(s)	92, 1121
HinfI	GANTC	7 cut(s)	22, 71, 269, 320, 646, 1280, 1377
HpaI	GTTAAC	1 cut(s)	1164
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	1164
Hpy188I	TCNGA	8 cut(s)	10, 31, 57, 233, 564, 1218, 1260, 1376
Hpy188III	TCNNGA	4 cut(s)	63, 586, 773, 1381
Hpy8I	GTNNAC	1 cut(s)	1164
HpyAV	CCTTC	5 cut(s)	115, 602, 678, 722, 1492
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	3 cut(s)	142, 445, 1205
HpyCH4V	TGCA	7 cut(s)	137, 474, 496, 603, 757, 836, 1482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 1148
HpyF3I	CTNAG	2 cut(s)	329, 458
HpySE526I	ACGT	3 cut(s)	142, 445, 1205
Hsp92II	CATG	7 cut(s)	194, 250, 637, 653, 806, 952, 1384
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	1164
Kzo9I	GATC	5 cut(s)	187, 264, 582, 1387, 1391
LweI	GCATC	6 cut(s)	40, 124, 176, 241, 583, 1129
MaeI	CTAG	4 cut(s)	255, 818, 1023, 1089
MaeII	ACGT	3 cut(s)	142, 445, 1205
MaeIII	GTNAC	6 cut(s)	324, 335, 343, 738, 1052, 1287
MalI	GATC	5 cut(s)	189, 266, 584, 1389, 1393
MbiI	CCGCTC	1 cut(s)	923
MboI	GATC	5 cut(s)	187, 264, 582, 1387, 1391
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	7 cut(s)	80, 305, 823, 930, 1000, 1131, 1349
MlyI	GAGTC	1 cut(s)	1289
MmeI	TCCRAC	4 cut(s)	19, 271, 618, 1096
MseI	TTAA	4 cut(s)	813, 827, 861, 1163
MspCI	CTTAAG	1 cut(s)	860
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	1285, 1299
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	1285, 1299
MwoI	GCNNNNNNNGC	2 cut(s)	143, 1148
NdeI	CATATG	3 cut(s)	540, 985, 1417
NdeII	GATC	5 cut(s)	187, 264, 582, 1387, 1391
NlaIII	CATG	7 cut(s)	194, 250, 637, 653, 806, 952, 1384
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	1287
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	353
PagI	TCATGA	1 cut(s)	1380
PciI	ACATGT	1 cut(s)	633
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	6 cut(s)	22, 71, 269, 320, 646, 1377
PfoI	TCCNGGA	1 cut(s)	1297
PinAI	ACCGGT	1 cut(s)	34
PleI	GAGTC	1 cut(s)	1288
PpsI	GAGTC	1 cut(s)	1288
Ppu21I	YACGTR	1 cut(s)	1206
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	1283, 1297
PspGI	CCWGG	2 cut(s)	1283, 1297
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	201, 505
PsuI	RGATCY	1 cut(s)	582
RsaI	GTAC	2 cut(s)	381, 1208
RsaNI	GTAC	2 cut(s)	380, 1207
SaqAI	TTAA	4 cut(s)	813, 827, 861, 1163
Sau3AI	GATC	5 cut(s)	187, 264, 582, 1387, 1391
Sau96I	GGNCC	2 cut(s)	201, 505
SchI	GAGTC	1 cut(s)	1289
ScrFI	CCNGG	2 cut(s)	1285, 1299
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	6 cut(s)	40, 124, 176, 241, 583, 1129
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	2 cut(s)	201, 505
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
SnaBI	TACGTA	1 cut(s)	1206
Sse9I	AATT	7 cut(s)	80, 305, 823, 930, 1000, 1131, 1349
SsiI	CCGC	4 cut(s)	619, 923, 1142, 1344
SspMI	CTAG	4 cut(s)	255, 818, 1023, 1089
StyD4I	CCNGG	2 cut(s)	1283, 1297
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	3 cut(s)	145, 448, 1208
TaqI	TCGA	6 cut(s)	267, 353, 487, 874, 1390, 1427
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	7 cut(s)	80, 305, 823, 930, 1000, 1131, 1349
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	6 cut(s)	22, 71, 269, 320, 646, 1377
Tru1I	TTAA	4 cut(s)	813, 827, 861, 1163
Tru9I	TTAA	4 cut(s)	813, 827, 861, 1163
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	1287
Tsp45I	GTSAC	1 cut(s)	1287
TspRI	CASTG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	860
VpaK11BI	GGWCC	2 cut(s)	201, 505
XapI	RAATTY	2 cut(s)	305, 823
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 244
XspI	CTAG	4 cut(s)	255, 818, 1023, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.