Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011738

Physical Location & Seq

Genomic Coordinates Forward (+)

57480228 .. 57482907

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG439100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGGCATAACCCTTTCGTGCTCCCAATCTCAACTCGGAAGTACTCAACTGATCCACACACACTCAGCACCAAACAATGTTGTCAGAGCCATCTGTGATTCTTTCAGAACCGGTTGGAACTGGGATGCTCTGACATCAAGATTTGATTCTCTCAAATTAGATGGAAAGCTTGTTGAGAGTGTGTTGTTAGAACTGAAGGAACCAGTTGATGCAAAACGTGCTCTGGGTTTCTTCCACTGGGCATCAAACAGGAAAGGGATTGATCATGGGGTCTGGTCCTACTCCATAGCCATTCATATTTTGGTCAGAGCCAAGATGGTCATGGACGCTAGAGCTTTGATCGAATCGGTTTTGAAGAAGAATGTTGGAAACGAGTTGAAGTTTTCGGTTGTGGATTCGTTACTTAGTAGTTACGAGGTCACTGCTTCGAACCCTTTTGTGTTTGATTTGCTTGTACAGGCTTATGCTAAAATGAGAATGTTTGAGACTGGTTTTGATGTTTGTTGCTATTTGAGGGAACGTGGGTTGCCTTTAAGTCTTACAAGTTACAATAGTTTGCTTCGAGTTGTTCAAAGATCGGACCGAAATGGTCTGGTTTGGAAGATTTATGAGCATATTGTGGAAAGGAGGAGTTATCCGAATGATGAGACGGTGAGGATCTTGATTGATGCTTTGTGCAAGGAAGGGGAGTTGCGGAAATATGCCGACATGTTGGAGAGGATTCATGGGAAGAAATGCTCTCCTTCTGTGATTGTGAATGCTAGTTTGGTGTTTAGGATTTTGGAGGAGGGTAGAGTTGAAGAAGGTGTGGTGTTACTGAAGAGAATGTTGCTAAAGAATATGGTTCTTGATACAATTGCTTACTCATTGATTGTTTATGCTAAAGTTAAACTAGGAAATTTAGGCTCTGCACAGGAGGTGTATGAACAAATGCTTAAGAGAGGTTTTCGAGCAAACTCTTTTGTTTATACCTTGTTCATTGACGCTCATTGTAAAGCTGGAAGAATTGATGAAGCACAATCCATGATGAATGAGATGGGAAATATGGATTTGAAGCCATATGCTGAGAGCTATAATTTTCTTATTGACGGATGTGCTAAAGCCGGTAGAGTGGAAGAAAGTGCAAGTTACTTGAAGCAGATGGTGGAGAGCAGGTTCATTCCTAGTCTTGGGGCTTTCAATGAGATGGTTGGAAAGCTATGCGAAATTGGGGATGTGGACCAAGCCAATGTGATGTTAACGATACTGTTAGATAAAGGGTTCTTACCGAATGACATTACATACTCTCTTCTGATTGACGGGTATGCGAGAAAAGGGGAGAATGATGAAGTTCTGAAGCTCTATTATGAGATGGAGTCCAGGTCACTTCCTCCTGGAATATTGGTTTTTACATCATTGATAAAAAGCTTTTGCCAATGCGGGAAATTGGAGGAAGCAAAAAAGTATTTCAGAATCATGAAAGATCGATCAATAGCCCCAAGTTTATCTACATATGATACATTGATTGCGAACCACTTTGAGCAGGGAAATACAGAGAAGGCTGATTGCTTGCCTTGCAATGAAATGGTTTTACAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

526

Amino Acids

59.5

Weight (kDa)

6.54

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	284 - 332	9e-07	PPR repeat family
PPR_1	PF12854	314 - 346	5e-08	PPR repeat
PPR_2	PF13041	319 - 367	2e-10	PPR repeat family
PPR	PF01535	357 - 385	4.3e-06	PPR repeat
PPR_2	PF13041	389 - 437	2.6e-07	PPR repeat family
PPR_1	PF12854	419 - 452	5.3e-06	PPR repeat
PPR	PF01535	426 - 454	1.2e-06	PPR repeat
PPR_2	PF13041	431 - 472	2.2e-07	PPR repeat family
PPR_3	PF13812	447 - 502	5.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	456 - 487	4.9e-06	PPR repeat
PPR_2	PF13041	458 - 502	1.3e-09	PPR repeat family
PPR	PF01535	462 - 490	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66345
fragaria_vesca	FvH4_5g33100 FvH4_5g33100
prunus_persica	Prupe.4G237400_v2.0.a1
pyrus_communis	pycom11g17530
rosa_chinensis	RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291
rosa_laevigata	RLG00000001422
rosa_multiflora	Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005
rosa_rugosa	Rorug07G0266200
rosa_samantha	Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000
rosa_wichuraiana	Rw7G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1143
AciI	CCGC	2 cut(s)	694, 1419
AclWI	GGATC	2 cut(s)	46, 665
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	3 cut(s)	215, 839, 1355
AfaI	GTAC	2 cut(s)	43, 456
AfiI	CCNNNNNNNGG	1 cut(s)	1169
AflII	CTTAAG	1 cut(s)	935
AflIII	ACRYGT	1 cut(s)	708
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	7 cut(s)	355, 379, 572, 800, 1054, 1135, 1180
AjnI	CCWGG	2 cut(s)	1358, 1372
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
AloI	GAACNNNNNNTCC	2 cut(s)	1139, 1171
AluBI	AGCT	7 cut(s)	169, 335, 998, 1071, 1198, 1339, 1407
AluI	AGCT	7 cut(s)	169, 335, 998, 1071, 1198, 1339, 1407
Alw21I	GWGCWC	2 cut(s)	23, 223
Alw26I	GTCTC	2 cut(s)	479, 641
AlwI	GGATC	2 cut(s)	46, 665
ApoI	RAATTY	1 cut(s)	898
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	276, 580, 1219
AsuHPI	GGTGA	1 cut(s)	664
AsuII	TTCGAA	1 cut(s)	428
AvaII	GGWCC	3 cut(s)	276, 580, 1219
Bbv12I	GWGCWC	2 cut(s)	23, 223
BccI	CCATC	7 cut(s)	98, 155, 310, 1030, 1135, 1180, 1345
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	2 cut(s)	1360, 1374
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	479, 641
BfaI	CTAG	4 cut(s)	330, 762, 893, 1164
BfrI	CTTAAG	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	1143
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	1360, 1374
Bme18I	GGWCC	3 cut(s)	276, 580, 1219
BmgT120I	GGNCC	3 cut(s)	276, 580, 1219
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	1360, 1374
BmrI	ACTGGG	2 cut(s)	130, 247
BmsI	GCATC	4 cut(s)	115, 199, 251, 658
BmuI	ACTGGG	2 cut(s)	130, 247
Bpu14I	TTCGAA	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	1465
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	4 cut(s)	1139, 1169, 1346, 1376
Bsc4I	CCNNNNNNNGG	1 cut(s)	1169
Bse118I	RCCGGY	2 cut(s)	110, 1103
Bse1I	ACTGG	4 cut(s)	125, 203, 242, 493
Bse3DI	GCAATG	1 cut(s)	1564
BseBI	CCWGG	2 cut(s)	1360, 1374
BseCI	ATCGAT	1 cut(s)	1465
BseGI	GGATG	3 cut(s)	130, 1097, 1219
BseLI	CCNNNNNNNGG	1 cut(s)	1169
BseMI	GCAATG	1 cut(s)	1564
BseMII	CTCAG	2 cut(s)	78, 1056
BseNI	ACTGG	4 cut(s)	125, 203, 242, 493
BseRI	GAGGAG	2 cut(s)	643, 800
BsgI	GTGCAG	1 cut(s)	894
BshTI	ACCGGT	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	1465
BsiHKAI	GWGCWC	2 cut(s)	23, 223
BsiSI	CCGG	2 cut(s)	111, 1104
BslI	CCNNNNNNNGG	1 cut(s)	1169
BsmAI	GTCTC	2 cut(s)	479, 641
BsmBI	CGTCTC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	763
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	23, 223
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
BspACI	CCGC	2 cut(s)	694, 1419
BspCNI	CTCAG	2 cut(s)	77, 1057
BspDI	ATCGAT	1 cut(s)	1465
BspHI	TCATGA	1 cut(s)	1455
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	1143
BspPI	GGATC	2 cut(s)	46, 665
BspT104I	TTCGAA	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	935
BsrDI	GCAATG	1 cut(s)	1564
BsrFI	RCCGGY	2 cut(s)	110, 1103
BsrGI	TGTACA	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	125, 203, 242, 493
BssAI	RCCGGY	2 cut(s)	110, 1103
BssMI	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
Bst2UI	CCWGG	2 cut(s)	1360, 1374
Bst4CI	ACNGT	2 cut(s)	652, 1248
Bst6I	CTCTTC	2 cut(s)	815, 1293
BstAFI	CTTAAG	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	1550
BstDEI	CTNAG	3 cut(s)	64, 404, 1065
BstF5I	GGATG	3 cut(s)	130, 1097, 1219
BstKTI	GATC	7 cut(s)	54, 265, 342, 578, 660, 1465, 1469
BstMAI	GTCTC	2 cut(s)	479, 641
BstMBI	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 1554
BstNI	CCWGG	2 cut(s)	1360, 1374
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	1358, 1372
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
Bsu15I	ATCGAT	1 cut(s)	1465
BsuTUI	ATCGAT	1 cut(s)	1465
BtsCI	GGATG	3 cut(s)	130, 1097, 1219
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	235, 420
BveI	ACCTGC	1 cut(s)	1143
Cac8I	GCNNGC	1 cut(s)	1550
CciI	TCATGA	1 cut(s)	1455
Cfr10I	RCCGGY	2 cut(s)	110, 1103
Cfr13I	GGNCC	3 cut(s)	276, 580, 1219
ClaI	ATCGAT	1 cut(s)	1465
CpoI	CGGWCCG	1 cut(s)	580
CseI	GACGC	2 cut(s)	335, 992
Csp6I	GTAC	2 cut(s)	42, 455
CspAI	ACCGGT	1 cut(s)	110
CspI	CGGWCCG	1 cut(s)	580
CviAII	CATG	6 cut(s)	266, 322, 709, 725, 1024, 1456
CviQI	GTAC	2 cut(s)	42, 455
DdeI	CTNAG	3 cut(s)	64, 404, 1065
DpnI	GATC	7 cut(s)	53, 264, 341, 577, 659, 1464, 1468
DpnII	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
Eam1104I	CTCTTC	2 cut(s)	815, 1293
EarI	CTCTTC	2 cut(s)	815, 1293
Eco47I	GGWCC	3 cut(s)	276, 580, 1219
Eco57I	CTGAAG	3 cut(s)	215, 839, 1355
EcoRII	CCWGG	2 cut(s)	1358, 1372
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	6 cut(s)	269, 325, 712, 728, 1027, 1459
FatI	CATG	6 cut(s)	265, 321, 708, 724, 1023, 1455
FauI	CCCGC	1 cut(s)	1412
FauNDI	CATATG	2 cut(s)	1060, 1492
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	3 cut(s)	137, 1104, 1226
FspBI	CTAG	4 cut(s)	330, 762, 893, 1164
HapII	CCGG	2 cut(s)	111, 1104
HgaI	GACGC	2 cut(s)	335, 992
Hin1II	CATG	6 cut(s)	269, 325, 712, 728, 1027, 1459
HincII	GTYRAC	1 cut(s)	1239
HindII	GTYRAC	1 cut(s)	1239
HindIII	AAGCTT	2 cut(s)	167, 1405
HinfI	GANTC	7 cut(s)	98, 146, 344, 395, 721, 1355, 1452
HpaI	GTTAAC	1 cut(s)	1239
HpaII	CCGG	2 cut(s)	111, 1104
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	1219, 1239
Hpy188III	TCNNGA	4 cut(s)	138, 661, 848, 1456
Hpy8I	GTNNAC	2 cut(s)	1219, 1239
HpyAV	CCTTC	5 cut(s)	190, 677, 753, 797, 1531
HpyCH4III	ACNGT	2 cut(s)	652, 1248
HpyCH4IV	ACGT	2 cut(s)	217, 520
HpyCH4V	TGCA	5 cut(s)	212, 678, 911, 1124, 1557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 1554
HpyF3I	CTNAG	3 cut(s)	64, 404, 1065
HpySE526I	ACGT	2 cut(s)	217, 520
Hsp92II	CATG	6 cut(s)	269, 325, 712, 728, 1027, 1459
Ksp22I	TGATCA	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	1239
Kzo9I	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
LmnI	GCTCC	1 cut(s)	26
LweI	GCATC	4 cut(s)	115, 199, 251, 658
MaeI	CTAG	4 cut(s)	330, 762, 893, 1164
MaeII	ACGT	2 cut(s)	217, 520
MaeIII	GTNAC	7 cut(s)	399, 410, 418, 545, 813, 1127, 1362
MalI	GATC	7 cut(s)	53, 264, 341, 577, 659, 1464, 1468
MboI	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	23, 223
MluCI	AATT	7 cut(s)	155, 855, 898, 1005, 1075, 1206, 1424
MlyI	GAGTC	1 cut(s)	1364
MmeI	TCCRAC	4 cut(s)	95, 346, 693, 1171
MseI	TTAA	4 cut(s)	533, 888, 936, 1238
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	2 cut(s)	111, 1104
MspR9I	CCNGG	2 cut(s)	1360, 1374
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	1360, 1374
MwoI	GCNNNNNNNGC	2 cut(s)	218, 1554
NdeI	CATATG	2 cut(s)	1060, 1492
NdeII	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
NlaIII	CATG	6 cut(s)	269, 325, 712, 728, 1027, 1459
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	418, 1362
NspI	RCATGY	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	428
PagI	TCATGA	1 cut(s)	1455
PciI	ACATGT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	6 cut(s)	98, 146, 344, 395, 721, 1452
PfoI	TCCNGGA	1 cut(s)	1372
PinAI	ACCGGT	1 cut(s)	110
PleI	GAGTC	1 cut(s)	1363
PpsI	GAGTC	1 cut(s)	1363
PscI	ACATGT	1 cut(s)	708
Psp6I	CCWGG	2 cut(s)	1358, 1372
PspGI	CCWGG	2 cut(s)	1358, 1372
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	3 cut(s)	276, 580, 1219
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	2 cut(s)	43, 456
RsaNI	GTAC	2 cut(s)	42, 455
Rsr2I	CGGWCCG	1 cut(s)	580
RsrII	CGGWCCG	1 cut(s)	580
SaqAI	TTAA	4 cut(s)	533, 888, 936, 1238
Sau3AI	GATC	7 cut(s)	51, 262, 339, 575, 657, 1462, 1466
Sau96I	GGNCC	3 cut(s)	276, 580, 1219
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	1364
ScrFI	CCNGG	2 cut(s)	1360, 1374
SduI	GDGCHC	2 cut(s)	23, 223
SfaNI	GCATC	4 cut(s)	115, 199, 251, 658
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	3 cut(s)	276, 580, 1219
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
Sse9I	AATT	7 cut(s)	155, 855, 898, 1005, 1075, 1206, 1424
SsiI	CCGC	2 cut(s)	694, 1419
SspI	AATATT	1 cut(s)	1380
SspMI	CTAG	4 cut(s)	330, 762, 893, 1164
StyD4I	CCNGG	2 cut(s)	1358, 1372
TaaI	ACNGT	2 cut(s)	652, 1248
TaiI	ACGT	2 cut(s)	220, 523
TaqI	TCGA	5 cut(s)	342, 428, 562, 949, 1465
TaqII	GACCGA	1 cut(s)	597
TasI	AATT	7 cut(s)	155, 855, 898, 1005, 1075, 1206, 1424
TatI	WGTACW	2 cut(s)	41, 454
TfiI	GAWTC	6 cut(s)	98, 146, 344, 395, 721, 1452
Tru1I	TTAA	4 cut(s)	533, 888, 936, 1238
Tru9I	TTAA	4 cut(s)	533, 888, 936, 1238
TscAI	CASTG	2 cut(s)	242, 427
TseFI	GTSAC	2 cut(s)	418, 1362
Tsp45I	GTSAC	2 cut(s)	418, 1362
TspGWI	ACGGA	1 cut(s)	1104
TspRI	CASTG	2 cut(s)	242, 427
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	3 cut(s)	276, 580, 1219
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	298, 319
XspI	CTAG	4 cut(s)	330, 762, 893, 1164
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.