Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011738

Physical Location & Seq

Genomic Coordinates Forward (+)

23911092 .. 23914853

Gene Structure 3762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGGTTCTTTGCTGCGTCGAATCACACACTCTTTAAATTCCTTGAAACCCAACACTCAACTGATCCACACAAACTCGACACCAAACAATGTTGTCAGAGCCATTTGTGATTCTTTCAAATCCGGTTGGAGTTGGGATGCTCTGACCTCAAAATTTGCTTGTGTGAAATTAGATGCAAAACTCGTTGAGAATGTATTGTTGGAACTGAAGGACCCAAATGATGCCAAACGTGCTCTGGGTTTCTTCCATTGGGTGTCAAAAAGGAAAGATTTTGATCATGGGGTCTGGTCCTACTCCATCACCATTCACATTTTGGTCAGAGCCAAGATGGCCATGGATGCTAGAGCTTTGATGGAATCGGTTTTGAAGAAGAATGTTGGAGATTCGTTGAAGTTTTCGGTTGTGGATTCGTTACTTAGTAGTTATGAGGTCACTGCTTCAAACCCTTTTGTGTTTGATTTGCTAGTACAGACTTATGCTAAGATGAGAATGTTTGAGACTGGTTTTGATGTTTGTTGCTATTTGAGGGAGCGTGGGCTGCCTTTAAGTCTTATAAGTTACAACACTTTGCTTCGTGTTGTCGAAAGATCGGAGCGAAATGCTTTGGTTTGGAAGATTTATGAGCATATGGTGGGACGGAGGAGTTATCCGAATGAAGAGACGGTTAGAATCTTGATTGATGCTTTGTGCAAGGAAGGGGAGCTGCGGAAGTATGCCGACATGTTGGACAGGATTCATGGGAAGAGGTGTTCTCCTTCTGTGATTGTGAATACTAGTTTGGTGTTTAGGATTTTGGAGGAGGGTAGAGTTGAAGAAGGTATGGTGTTGTTGAAGAGAATGTTGCAAAAGAATATGGTTCTTGATACAATTGCTTACTCATTGATTGTTTATGCTAAAGTTAAACTAGAAGATTTAGGCTCTGCACAGCAGGTGTATGAAGAAATGCTTAAGAGAGGTTTTCGAGCAAACTCTTTTGTCTATACCTTGTTCATCGAGGCTCATTGTAAAGCGGGAAGAATTGATGAAGCACAATCAATGATGAATGAGATGGGAAATATGGATTTGAAGCCATATGATGAGAGCTATAATTTTCTTATCGAGGGATGTGCTAAAGCAGGTAGAGTGGAAGAAAGTGTGAATTACATGAAGCAGATGATGGAGATCAGGTTCATTCCTAGTCTTGGGGCATTCAATGAGATGGTCGGAAAGCTATGTGAAATTGGGGATGCGGACCAAGCCAATGTGATGTTAACTATACTGTTAGATAAAGGGTTCTCACCGAATGAGATTACATACTCTCTTCTGATTGACGGATATGCTAGAAAAGGGAAGAGTGATGAAGTTCTCAAGCTCTTTTATGAGATGGAGTCCAGGTCGCTTTCTCCTGGAATGTTGGTTTTTACATCCTTGATAAAGAGCTTTTGCCAATGCGGGAAATCGGAGGAAGCAAAAAAGTACTTCAGAATCATGAAAGACCGATCAATAGCCCCAAGTATATCTACATATGAGATATTTCTTGCGAACCACTTCGAGCAGGGAAACACAGAAAGGGCTGATTGCTTGTCGAGGAATGAAATGGTTTTACAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

531

Amino Acids

60.59

Weight (kDa)

7.87

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 231	9.6e-08	PPR repeat family
PPR_long	PF17177	301 - 448	4.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	318 - 350	1.7e-07	PPR repeat
PPR_2	PF13041	323 - 371	1.9e-09	PPR repeat family
PPR_2	PF13041	393 - 441	3.3e-07	PPR repeat family
PPR_1	PF12854	423 - 456	8.5e-08	PPR repeat
PPR	PF01535	430 - 458	4.6e-08	PPR repeat
PPR_2	PF13041	435 - 476	7.9e-08	PPR repeat family
PPR_2	PF13041	465 - 506	1.9e-08	PPR repeat family
PPR	PF01535	466 - 494	3.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66345
fragaria_vesca	FvH4_5g33100 FvH4_5g33100
prunus_persica	Prupe.4G237400_v2.0.a1
pyrus_communis	pycom11g17530
rosa_chinensis	RchiOBHm_Chr7g0231271 RchiOBHm_Chr7g0231291
rosa_laevigata	RLG00000001422
rosa_multiflora	Rmu_co8271321.1_g000001 Rmu_sc0003396.1_g000009 Rmu_sc0004571.1_g000005
rosa_rugosa	Rorug07G0266200
rosa_samantha	Rh7AG419400 Rh7AG419600 Rh7BG394600 Rh7CG439100 Rh7CG439200 Rh7DG413000
rosa_wichuraiana	Rw7G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	919
Acc36I	ACCTGC	2 cut(s)	919, 1106
AciI	CCGC	4 cut(s)	706, 1010, 1229, 1431
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	37, 152
AcuI	CTGAAG	2 cut(s)	227, 1444
AfaI	GTAC	2 cut(s)	468, 1457
AfiI	CCNNNNNNNGG	1 cut(s)	1181
AflII	CTTAAG	1 cut(s)	947
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	9 cut(s)	46, 118, 367, 391, 441, 812, 832, 1066, 1192
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	2 cut(s)	1370, 1384
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 214, 761, 793
AloI	GAACNNNNNNTCC	4 cut(s)	733, 765, 1151, 1183
AluBI	AGCT	6 cut(s)	347, 703, 1083, 1210, 1351, 1419
AluI	AGCT	6 cut(s)	347, 703, 1083, 1210, 1351, 1419
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	491, 653
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	13, 538, 703
ApoI	RAATTY	2 cut(s)	37, 152
Asp700I	GAANNNNTTC	1 cut(s)	1526
AspS9I	GGNCC	3 cut(s)	211, 288, 1231
AsuHPI	GGTGA	2 cut(s)	292, 1269
AvaII	GGWCC	3 cut(s)	211, 288, 1231
BalI	TGGCCA	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	525, 690
BccI	CCATC	7 cut(s)	305, 322, 346, 1042, 1150, 1192, 1357
BcgI	CGANNNNNNTGC	2 cut(s)	1088, 1122
BciT130I	CCWGG	2 cut(s)	1372, 1386
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	491, 653
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	6 cut(s)	342, 464, 774, 905, 1176, 1320
BfrI	CTTAAG	1 cut(s)	947
BfuAI	ACCTGC	2 cut(s)	919, 1106
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	14, 539, 704
BlsI	GCNGC	3 cut(s)	15, 540, 705
BmcAI	AGTACT	1 cut(s)	1457
Bme1390I	CCNGG	2 cut(s)	1372, 1386
Bme18I	GGWCC	3 cut(s)	211, 288, 1231
BmgT120I	GGNCC	3 cut(s)	211, 288, 1231
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	1372, 1386
BmsI	GCATC	6 cut(s)	127, 163, 211, 328, 670, 1216
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpuEI	CTTGAG	1 cut(s)	1331
BsaBI	GATNNNNATC	2 cut(s)	273, 1160
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	1151, 1181, 1358, 1388
Bsc4I	CCNNNNNNNGG	1 cut(s)	1181
Bse1I	ACTGG	1 cut(s)	505
Bse8I	GATNNNNATC	2 cut(s)	273, 1160
BseBI	CCWGG	2 cut(s)	1372, 1386
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	5 cut(s)	142, 343, 1109, 1231, 1403
BseJI	GATNNNNATC	2 cut(s)	273, 1160
BseLI	CCNNNNNNNGG	1 cut(s)	1181
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	2 cut(s)	655, 812
BseXI	GCAGC	2 cut(s)	525, 690
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	1181
BsmAI	GTCTC	2 cut(s)	491, 653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	5 cut(s)	63, 274, 587, 1161, 1478
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	4 cut(s)	706, 1010, 1229, 1431
BspANI	GGCC	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	1467
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	919, 1106
BspPI	GGATC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	947
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	5 cut(s)	63, 274, 587, 1161, 1478
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	1372, 1386
Bst4CI	ACNGT	2 cut(s)	664, 1260
Bst6I	CTCTTC	5 cut(s)	651, 737, 827, 1305, 1325
BstAFI	CTTAAG	1 cut(s)	947
BstDEI	CTNAG	2 cut(s)	416, 480
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	142, 343, 1109, 1231, 1403
BstKTI	GATC	5 cut(s)	66, 277, 590, 1164, 1481
BstMAI	GTCTC	2 cut(s)	491, 653
BstMBI	GATC	5 cut(s)	63, 274, 587, 1161, 1478
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 329, 338, 538, 1235
BstNI	CCWGG	2 cut(s)	1372, 1386
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	1370, 1384
BstV1I	GCAGC	2 cut(s)	525, 690
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	142, 343, 1109, 1231, 1403
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	2 cut(s)	919, 1106
CciI	TCATGA	1 cut(s)	1467
Cfr13I	GGNCC	3 cut(s)	211, 288, 1231
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	467, 1456
CviAII	CATG	6 cut(s)	278, 334, 721, 737, 1144, 1468
CviQI	GTAC	2 cut(s)	467, 1456
DdeI	CTNAG	2 cut(s)	416, 480
DpnI	GATC	5 cut(s)	65, 276, 589, 1163, 1480
DpnII	GATC	5 cut(s)	63, 274, 587, 1161, 1478
DraI	TTTAAA	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	5 cut(s)	651, 737, 827, 1305, 1325
EarI	CTCTTC	5 cut(s)	651, 737, 827, 1305, 1325
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	211, 288, 1231
Eco57I	CTGAAG	2 cut(s)	227, 1444
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	1370, 1384
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	6 cut(s)	281, 337, 724, 740, 1147, 1471
FalI	AAGNNNNNCTT	2 cut(s)	930, 962
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	6 cut(s)	277, 333, 720, 736, 1143, 1467
FauI	CCCGC	2 cut(s)	1003, 1424
FauNDI	CATATG	3 cut(s)	627, 1072, 1504
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	14, 539, 704
FokI	GGATG	5 cut(s)	149, 350, 1116, 1238, 1390
Fsp4HI	GCNGC	3 cut(s)	14, 539, 704
FspBI	CTAG	6 cut(s)	342, 464, 774, 905, 1176, 1320
GluI	GCNGC	3 cut(s)	14, 539, 704
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	281, 337, 724, 740, 1147, 1471
HincII	GTYRAC	1 cut(s)	1251
HindII	GTYRAC	1 cut(s)	1251
HinfI	GANTC	9 cut(s)	21, 110, 356, 383, 407, 669, 733, 1367, 1464
HpaI	GTTAAC	1 cut(s)	1251
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	292, 1269
Hpy166II	GTNNAC	1 cut(s)	1251
Hpy188I	TCNGA	9 cut(s)	98, 144, 320, 592, 651, 1205, 1305, 1441, 1463
Hpy188III	TCNNGA	3 cut(s)	673, 860, 1468
Hpy8I	GTNNAC	1 cut(s)	1251
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	4 cut(s)	202, 689, 765, 809
HpyCH4III	ACNGT	2 cut(s)	664, 1260
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	176, 690, 844, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 329, 338, 538, 1235
HpyF3I	CTNAG	2 cut(s)	416, 480
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	281, 337, 724, 740, 1147, 1471
Ksp22I	TGATCA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	1251
Kzo9I	GATC	5 cut(s)	63, 274, 587, 1161, 1478
LmnI	GCTCC	3 cut(s)	529, 592, 700
Lsp1109I	GCAGC	2 cut(s)	525, 690
LweI	GCATC	6 cut(s)	127, 163, 211, 328, 670, 1216
MaeI	CTAG	6 cut(s)	342, 464, 774, 905, 1176, 1320
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	3 cut(s)	411, 430, 557
MalI	GATC	5 cut(s)	65, 276, 589, 1163, 1480
MboI	GATC	5 cut(s)	63, 274, 587, 1161, 1478
MfeI	CAATTG	1 cut(s)	867
MhlI	GDGCHC	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	8 cut(s)	37, 152, 167, 867, 1017, 1087, 1138, 1218
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	1376
MmeI	TCCRAC	5 cut(s)	107, 180, 358, 705, 1183
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	1526
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	5 cut(s)	35, 545, 900, 948, 1250
Msp20I	TGGCCA	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	1372, 1386
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	2 cut(s)	1372, 1386
MwoI	GCNNNNNNNGC	5 cut(s)	230, 329, 338, 538, 1235
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	3 cut(s)	627, 1072, 1504
NdeII	GATC	5 cut(s)	63, 274, 587, 1161, 1478
NlaIII	CATG	6 cut(s)	281, 337, 724, 740, 1147, 1471
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	724
PagI	TCATGA	1 cut(s)	1467
PaqCI	CACCTGC	1 cut(s)	919
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	1 cut(s)	1187
PdmI	GAANNNNTTC	1 cut(s)	1526
PfeI	GAWTC	8 cut(s)	21, 110, 356, 383, 407, 669, 733, 1464
PfoI	TCCNGGA	1 cut(s)	1384
PkrI	GCNGC	3 cut(s)	15, 540, 705
PleI	GAGTC	1 cut(s)	1375
PpsI	GAGTC	1 cut(s)	1375
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	1370, 1384
PspGI	CCWGG	2 cut(s)	1370, 1384
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	3 cut(s)	211, 288, 1231
PspPPI	RGGWCCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	468, 1457
RsaNI	GTAC	2 cut(s)	467, 1456
SaqAI	TTAA	5 cut(s)	35, 545, 900, 948, 1250
SatI	GCNGC	3 cut(s)	14, 539, 704
Sau3AI	GATC	5 cut(s)	63, 274, 587, 1161, 1478
Sau96I	GGNCC	3 cut(s)	211, 288, 1231
ScaI	AGTACT	1 cut(s)	1457
SchI	GAGTC	1 cut(s)	1376
ScrFI	CCNGG	2 cut(s)	1372, 1386
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	6 cut(s)	127, 163, 211, 328, 670, 1216
SinI	GGWCC	3 cut(s)	211, 288, 1231
SmlI	CTYRAG	2 cut(s)	947, 1346
SmoI	CTYRAG	2 cut(s)	947, 1346
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	8 cut(s)	37, 152, 167, 867, 1017, 1087, 1138, 1218
SsiI	CCGC	4 cut(s)	706, 1010, 1229, 1431
SspMI	CTAG	6 cut(s)	342, 464, 774, 905, 1176, 1320
StyD4I	CCNGG	2 cut(s)	1370, 1384
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	664, 1260
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	8 cut(s)	19, 77, 582, 961, 993, 1098, 1530, 1565
TaqII	GACCGA	1 cut(s)	1491
TasI	AATT	8 cut(s)	37, 152, 167, 867, 1017, 1087, 1138, 1218
TatI	WGTACW	2 cut(s)	466, 1455
TfiI	GAWTC	8 cut(s)	21, 110, 356, 383, 407, 669, 733, 1464
Tru1I	TTAA	5 cut(s)	35, 545, 900, 948, 1250
Tru9I	TTAA	5 cut(s)	35, 545, 900, 948, 1250
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	13, 538, 703
Tsp45I	GTSAC	1 cut(s)	430
TspGWI	ACGGA	2 cut(s)	652, 1326
TspRI	CASTG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	947
VpaK11BI	GGWCC	3 cut(s)	211, 288, 1231
XapI	RAATTY	2 cut(s)	37, 152
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	3 cut(s)	232, 310, 331
XmnI	GAANNNNTTC	1 cut(s)	1526
XspI	CTAG	6 cut(s)	342, 464, 774, 905, 1176, 1320
ZrmI	AGTACT	1 cut(s)	1457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.